mRNA_Ecto-sp13_S_contig12942.2416.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12942.2416.1
Unique NamemRNA_Ecto-sp13_S_contig12942.2416.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: D7FTE3_ECTSI (Methylthioribose-1-phosphate isomerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE3_ECTSI)

HSP 1 Score: 486 bits (1252), Expect = 5.820e-166
Identity = 252/260 (96.92%), Postives = 255/260 (98.08%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKD--FDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEAT DKD  FDVKAFC+AMSTG+GQPDQPPP PEATAPSASLETPEGYRALTGEGAIA+YLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGD GGTVIVKQALPYVRCVGE
Sbjct:  211 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATGDKDKEFDVKAFCQAMSTGEGQPDQPPPNPEATAPSASLETPEGYRALTGEGAIAEYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDAGGTVIVKQALPYVRCVGE 470          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A6H5JD08_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD08_9PHAE)

HSP 1 Score: 286 bits (733), Expect = 2.670e-87
Identity = 150/182 (82.42%), Postives = 156/182 (85.71%), Query Frame = 1
Query:  139 VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPE---------------------TATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPK 621
            VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPE                     TATGGGISIEERPASELKTVAG KIAPDG+SAWNPAFDVTPARLITAIVTDKGCVPRKEA EDK+FDVKAFC+AMSTG+ +PDQP PVPEATAPSASLE PEGYRALTGEGAIA+YLAGLPK
Sbjct:  709 VAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPEVCVLMGVCFSNPGLQGWDSLSTATGGGISIEERPASELKTVAGIKIAPDGVSAWNPAFDVTPARLITAIVTDKGCVPRKEAAEDKEFDVKAFCQAMSTGERRPDQPAPVPEATAPSASLEIPEGYRALTGEGAIAEYLAGLPK 890          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A835YPH9_9STRA (Methylthioribose-1-phosphate isomerase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPH9_9STRA)

HSP 1 Score: 268 bits (684), Expect = 1.240e-80
Identity = 152/259 (58.69%), Postives = 174/259 (67.18%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCV-PRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTA+E V D LPGTLI DS ASFLMAQG VDAVA GADRV ANGDTANKIGT QLAIAA H+ +PF +VAP+T+ D   A G  I IE+R A EL +VAG KIA DGI  WNPAFDVTPA LIT IVTD G + P  +A   K FD+ AF  A S+          +P+  A S+S   P GY  L G G +  Y+ GL +V   +G +  A+V   E GDGN+NLVF CRGP G     VIVKQALPYVRCVGE
Sbjct:  217 QGARLTAFEMVEDNLPGTLITDSMASFLMAQGGVDAVATGADRVVANGDTANKIGTYQLAIAAKHHRLPFYIVAPVTTLDAALADGSQIKIEQRAAEELTSVAGIKIAADGIRVWNPAFDVTPAELITGIVTDVGVIRPTLDAQGKKVFDIPAFLRAHSSATA-------IPDTVAASSSCPAPVGYYPLLG-GKVVDYICGLARVAEFMGTTQPAEVEQSEIGDGNMNLVFICRGPKG----AVIVKQALPYVRCVGE 463          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A7S3FFL6_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3FFL6_9VIRI)

HSP 1 Score: 233 bits (594), Expect = 5.620e-71
Identity = 141/267 (52.81%), Postives = 171/267 (64.04%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASEL-KTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASS--------AADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QG RLTAYE VADGLPGTLI DSAA+  MAQGKV AV VGADRVAANGDTANKIGT  LA+AAAH+ +PF V +P T+ DP TATG  I IEER A+EL +T  G  +APDGI  WNPAFDVTPA LI  +VT+KG V R +   ++  D+KAF EA  +            E+   +A    P G+R L    AI  Y+AG+P  +A++G +         A     EE   GN+N V+   GP+G     V+VKQA+PYVRCVGE
Sbjct:   60 QGGRLTAYEIVADGLPGTLIADSAAASAMAQGKVQAVIVGADRVAANGDTANKIGTYALAVAAAHHNVPFFVASPTTTLDPTTATGADIVIEERDATELTRTRGGEALAPDGICVWNPAFDVTPAGLIAGVVTEKGVVARGKG--ERAIDIKAFVEAQRS------------ESELAAAPKGAP-GFRELDAASAI-DYVAGIPSAVAVLGGAKGEWRCHEVADSEGDEEAAAGNVNFVYFVSGPSGK----VVVKQAMPYVRCVGE 306          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A7S3Y9V7_HETAK (S-methyl-5-thioribose kinase (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y9V7_HETAK)

HSP 1 Score: 230 bits (587), Expect = 1.980e-67
Identity = 140/269 (52.04%), Postives = 167/269 (62.08%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASEL---KTVAGT------KIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKD--FDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QG RLTAYE V DGLPGTLI DSAA+ LM   ++D V VGADRVAANGDTANKIGT QLA+AA H+G+PF V AP T+ DP+   G  I IEER  +E+   K   G        IAP  I AWNPAFDVTPA LITAI+T++G +     T+     FDV  F E      G P+Q             + T  GY  +T +  +A YL G+ +   ++G + A+ V S EFGDGNLNLVFRC GP G   G +I KQALPYVRCVGE
Sbjct:  101 QGGRLTAYEIVEDGLPGTLIVDSAAALLMKTRQIDCVVVGADRVAANGDTANKIGTYQLAVAARHHGVPFYVAAPTTTLDPKIICGDDIPIEERSPTEITHQKIYDGAGGSSEVPIAPATIPAWNPAFDVTPAELITAIITERGPLLPARTTDKAGNVFDVPTFLE---NADGAPEQ----------KQGVVTKYGYYEMTVD-TVAHYLVGVRRCREVLGTADASAVTSVEFGDGNLNLVFRCEGPQG---GVLIAKQALPYVRCVGE 352          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: W7TVE0_9STRA (Methylthioribose-1-phosphate isomerase n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7TVE0_9STRA)

HSP 1 Score: 230 bits (587), Expect = 2.050e-66
Identity = 145/294 (49.32%), Postives = 173/294 (58.84%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGC---------------VPRKEATEDK-------------DFDVKAFCEAMSTGQGQPDQPPPVPEATAP-------SASLETPE-GYRALTGEGAIAQYLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTA+E V D LPGTLI DS  SFLMA   +DA+ VGADR+AANGDTANKIGT QLA+ A H+G+ F V AP TS D   A+G  I IEERPA EL  V G ++AP  I+ WNP FDVTPA LIT I+T+KG                VP +E  ED+              FD+  F      G+G    P  +P+A AP       SA+L +P  GY+AL+ E         +  V  L+GA + A+V   E GDGNLNLVF  RGP      TV+VKQALPYVRCVGE
Sbjct:  235 QGARLTAFELVQDQLPGTLITDSMVSFLMATQGLDAIVVGADRIAANGDTANKIGTYQLAVTAKHHGVAFYVAAPFTSFDLSLASGDQIEIEERPARELTQVQGIQVAPQEIAVWNPGFDVTPASLITGIITEKGVIHPFPSAGATDAKPRVPTQETGEDRRKSNGTVGHGRRMTFDIPGFL----NGEGAHQIPSSLPDAAAPTPSMELDSANLPSPSSGYKALSEENVALFLEKHVRDVWDLLGARTGAEVEISEVGDGNLNLVFIVRGPKN----TVVVKQALPYVRCVGE 520          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A383VBY4_TETOB (Methylthioribose-1-phosphate isomerase n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383VBY4_TETOB)

HSP 1 Score: 214 bits (544), Expect = 1.970e-60
Identity = 129/259 (49.81%), Postives = 158/259 (61.00%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIG-ASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTA+E V DGLP TL+ DSAA+ LMAQGKVDAV VGADRV ANGDTANKIGT   A+AAA +GIPF V AP T+ D   ATG  I IE+RPA E+    G ++  +GI  WNP FDVTP RL+  I+T++G VPR   +      V AF  A    Q Q      VP  T+  ++L+             +  +LAG P++   +G A S      +E GDGN+N V+   GP+G     V VKQALPYVRCVGE
Sbjct:  220 QGARLTAFELVHDGLPATLLVDSAAAALMAQGKVDAVVVGADRVVANGDTANKIGTFSHAVAAAAHGIPFFVAAPTTTLDAGLATGEEIEIEQRPAEEITHFKGQRVVVEGIDVWNPCFDVTPGRLVEGIITEEGLVPRDSGSGS--HKVAAFMAARQ--QAQAANGTAVPRPTSSVSALDA----------AGVVAFLAGRPQLAKHVGPAGSEGSWDVKEVGDGNINFVYIVTGPSGG----VCVKQALPYVRCVGE 460          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: C1MR76_MICPC (Methylthioribose-1-phosphate isomerase n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MR76_MICPC)

HSP 1 Score: 212 bits (540), Expect = 5.620e-60
Identity = 128/259 (49.42%), Postives = 163/259 (62.93%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVM-ALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTAYE   + +PGTLI DSAA+ LMA+GKVDAV VGADRVA NGDTANKIGT  LA++ A++G+PF V AP T+ D  TATG  I IE+RP++E+    GT++A +GI  WNP+FDVTP  LI  I+T+ G V RK A  D  F++  F   +    G+P             A+   P G+ AL     +  Y AG   +  AL GAS+  +  ++E GDGN+N V+   G  G+    VIVKQ LPYVRCVGE
Sbjct:  222 QGARLTAYEIAFEKMPGTLICDSAAAALMAKGKVDAVVVGADRVADNGDTANKIGTYNLAVSCAYHGVPFFVAAPSTTLDANTATGADIVIEDRPSTEVTHSLGTRVAAEGIDVWNPSFDVTPGSLIEGIITESG-VARKNA--DGAFEIGKFIRDVIGAGGEP-------------AAAAGPPGFVALD-TATVLDYCAGKASIADALGGASTRKEWSAKEVGDGNINFVYIVTGSGGNA---VIVKQGLPYVRCVGE 460          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: C1E0H5_MICCC (Methylthioribose-1-phosphate isomerase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E0H5_MICCC)

HSP 1 Score: 212 bits (539), Expect = 6.560e-60
Identity = 130/259 (50.19%), Postives = 165/259 (63.71%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVS-EEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTAYE   + +PGTLI DSAA+ LMA+GKVDAV VGADRVA NGDTANKIGT  LA++AA++ +PF V AP+++ DP TA G  I IE+RPA+E+    G ++A +GI  WNP+FDVTPA LI  I+T+KG V RK A+ D  F V  F  A  TG            + AP+  L  P G+ AL  +  +  Y A  P+V A +G +      S +E GDGN+N V+     AG   G +IVKQ LP+VR VGE
Sbjct:  208 QGARLTAYEIAFEKMPGTLICDSAAAALMAKGKVDAVVVGADRVADNGDTANKIGTYNLAVSAAYHDVPFFVAAPISTLDPSTAKGADIVIEDRPATEITHSLGKRVAAEGIDVWNPSFDVTPAALIAGIITEKGVV-RKTASGD--FAVGKFV-AEVTG------------SDAPAPKLSGPPGFVALDCD-TVLDYCAAKPEVAAALGGAEGRGAWSAKEVGDGNINFVYIVSNGAG---GAIIVKQGLPFVRVVGE 446          
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Match: A0A150H0Q5_GONPE (Methylthioribose-1-phosphate isomerase n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H0Q5_GONPE)

HSP 1 Score: 212 bits (539), Expect = 9.360e-60
Identity = 123/264 (46.59%), Postives = 160/264 (60.61%), Query Frame = 1
Query:   10 QGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAANGDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPASELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKDFDVKAFCE-----AMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQYLAGLPKVMALIGASSAADVVS-EEFGDGNLNLVFRCRGPAGDTGGTVIVKQALPYVRCVGE 783
            QGARLTA+E   DGLP TLI DSAA+ LM  G+VDAV VGADRV ANGDTANKIGT  L+IAAAHYG+PF + AP T+ DP   +G  I IE+R   EL    G ++A +G+  WNP+FDV P  LI  I+T+KG VP+++      F V++F       A   G            A+   +    P G+RAL  E ++  Y+A  P +   +G + + +  S  E GDGN+N VF   GP+G    ++ +KQALPYVRCVGE
Sbjct:  221 QGARLTAFELAHDGLPATLICDSAAAALMGTGQVDAVVVGADRVVANGDTANKIGTQSLSIAAAHYGVPFFIAAPTTTLDPALPSGEHIVIEQRTHEELTHFRGQRVAAEGVGVWNPSFDVAPGALIEGIITEKGMVPKQDGA----FQVRSFMAQLGLWAQPAGHSAAADHAADAVASGSGSGPAVPRGFRALDLE-SVKHYVAARPGLQQRVGPADSVESWSVREVGDGNINFVFIVEGPSG----SLCIKQALPYVRCVGE 475          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12942.2416.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTE3_ECTSI5.820e-16696.92Methylthioribose-1-phosphate isomerase n=1 Tax=Ect... [more]
A0A6H5JD08_9PHAE2.670e-8782.42Reverse transcriptase domain-containing protein n=... [more]
A0A835YPH9_9STRA1.240e-8058.69Methylthioribose-1-phosphate isomerase n=1 Tax=Tri... [more]
A0A7S3FFL6_9VIRI5.620e-7152.81Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A7S3Y9V7_HETAK1.980e-6752.04S-methyl-5-thioribose kinase (Fragment) n=1 Tax=He... [more]
W7TVE0_9STRA2.050e-6649.32Methylthioribose-1-phosphate isomerase n=3 Tax=Mon... [more]
A0A383VBY4_TETOB1.970e-6049.81Methylthioribose-1-phosphate isomerase n=1 Tax=Tet... [more]
C1MR76_MICPC5.620e-6049.42Methylthioribose-1-phosphate isomerase n=2 Tax=Mic... [more]
C1E0H5_MICCC6.560e-6050.19Methylthioribose-1-phosphate isomerase n=1 Tax=Mic... [more]
A0A150H0Q5_GONPE9.360e-6046.59Methylthioribose-1-phosphate isomerase n=1 Tax=Gon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12942contigEcto-sp13_S_contig12942:115..4113 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score490.3
Seed ortholog evalue5.4e-136
Seed eggNOG ortholog2880.D7FTE3
Preferred nameMRI1
Model size783
KEGG rclassRC00002,RC00078,RC01151
KEGG koko:K00899,ko:K03239,ko:K08963,ko:K20047
KEGG ReactionR04143,R04420
KEGG Pathwayko00270,ko01100,ko03013,map00270,map01100,map03013
KEGG ModuleM00034
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0000166,GO:0000302,GO:0001650,GO:0001882,GO:0001883,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0003824,GO:0005488,GO:0005515,GO:0005525,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005851,GO:0005911,GO:0006082,GO:0006412,GO:0006413,GO:0006518,GO:0006520,GO:0006555,GO:0006790,GO:0006807,GO:0006950,GO:0006979,GO:0008135,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009059,GO:0009066,GO:0009067,GO:0009086,GO:0009506,GO:0009719,GO:0009723,GO:0009725,GO:0009987,GO:0010033,GO:0010035,GO:0010038,GO:0010039,GO:0010467,GO:0016053,GO:0016853,GO:0016860,GO:0016861,GO:0017076,GO:0017144,GO:0019001,GO:0019509,GO:0019538,GO:0019752,GO:0030054,GO:0031974,GO:0031981,GO:0032549,GO:0032550,GO:0032553,GO:0032555,GO:0032561,GO:0032870,GO:0032991,GO:0033554,GO:0034599,GO:0034614,GO:0034641,GO:0034645,GO:0035639,GO:0035690,GO:0036094,GO:0042221,GO:0042493,GO:0042802,GO:0043043,GO:0043094,GO:0043102,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043436,GO:0043603,GO:0043604,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044452,GO:0044464,GO:0046394,GO:0046523,GO:0050896,GO:0051716,GO:0055044,GO:0070013,GO:0070887,GO:0071241,GO:0071248,GO:0071265,GO:0071267,GO:0071281,GO:0071310,GO:0071369,GO:0071495,GO:0071704,GO:0071731,GO:0071732,GO:0097159,GO:0097366,GO:0097367,GO:1901265,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902170
Exons6
EggNOG free text desc.S-methyl-5-thioribose-1-phosphate isomerase activity
EggNOG OGsCOG0182@1,KOG1468@2759
Ec32 ortholog descriptioneukaryotic translation initiation factor 2B family protein / eIF-2B family protein
Ec32 orthologEc-21_001010.1
EC2.7.1.100,5.3.1.23
Cds size783
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03012,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12942.2416.1prot_Ecto-sp13_S_contig12942.2416.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12942 115..4113 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462692.1872394-CDS-Ecto-sp13_S_contig12942:114..2171681462692.1872394-CDS-Ecto-sp13_S_contig12942:114..217Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 115..217 +
1681462692.1983953-CDS-Ecto-sp13_S_contig12942:840..9921681462692.1983953-CDS-Ecto-sp13_S_contig12942:840..992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 841..992 +
1681462692.2067451-CDS-Ecto-sp13_S_contig12942:1355..15921681462692.2067451-CDS-Ecto-sp13_S_contig12942:1355..1592Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 1356..1592 +
1681462692.2155173-CDS-Ecto-sp13_S_contig12942:1987..21151681462692.2155173-CDS-Ecto-sp13_S_contig12942:1987..2115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 1988..2115 +
1681462692.2246816-CDS-Ecto-sp13_S_contig12942:3309..33991681462692.2246816-CDS-Ecto-sp13_S_contig12942:3309..3399Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 3310..3399 +
1681462692.2391162-CDS-Ecto-sp13_S_contig12942:4040..41131681462692.2391162-CDS-Ecto-sp13_S_contig12942:4040..4113Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12942 4041..4113 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12942.2416.1

>prot_Ecto-sp13_S_contig12942.2416.1 ID=prot_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=261bp
SRAQGARLTAYEFVADGLPGTLIPDSAASFLMAQGKVDAVAVGADRVAAN
GDTANKIGTLQLAIAAAHYGIPFLVVAPLTSCDPETATGGGISIEERPAS
ELKTVAGTKIAPDGISAWNPAFDVTPARLITAIVTDKGCVPRKEATEDKD
FDVKAFCEAMSTGQGQPDQPPPVPEATAPSASLETPEGYRALTGEGAIAQ
YLAGLPKVMALIGASSAADVVSEEFGDGNLNLVFRCRGPAGDTGGTVIVK
QALPYVRCVGE
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mRNA from alignment at Ecto-sp13_S_contig12942:115..4113+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12942.2416.1 ID=mRNA_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3999bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12942:115..4113+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGCGCACAGGGCGCTCGCCTGACGGCTTACGAGTTTGTCGCCGACGG GCTGCCCGGCACGCTTATCCCTGATTCCGCCGCTTCTTTCCTCATGGCTC AAGGTACGATCGTTACACCCATTCGCTCACAGCAGTGTTGTGTGGCACAA GGTACACTCGATCTGCAAGAGGATCTATATGGTCCACTATGGGCAAAATT ACAGGCAGTGAACAGGTGTGTGTCGGATTCGTTTCTTGTTGGTTCGACAA GCGAAAACGGCGTCAGAGAGCATTTTGCAACCTTTGGGGACGAGACCGAG GCTTACCAACTCAGCCGGGATGCGCCGCCAATGTCCATTCCCTCAAGGAC AAGAACGTTAGGAAACACGACATGGCTGCCCCGCCCCCCCCCCCAACCGC CTATTCTTTCTCGGTGTAGCGCCTGTCTGTTGGGCAGACCACCCGAACGA TGTATGCCCCACCCCCGAGCTTTGCAAGAGCAGATATTAGAGTCAATCGC CTGAAGATTGCGGCTATGCGTGATGAAAAGCCCCTCCTCCCCCCCTGGCC AAACGCAAGGATGATGACCAGTCTCCGGTTGATCCCGGTGAAATGTAGCC TGGGCCGGCGAAAGCTTGGCGTTTCGCTCCGTCCCGGCATCGTAGGGATG CGAGGTCAATGGTCTAACGGCTACGGCATGCATTTACATGAGTACATGCC CCGTCCCCCCCGCCCAATGACCCCAGGAAAAGTGGATGCCGTCGCGGTCG GCGCCGATAGGGTAGCCGCCAACGGGGACACCGCGAACAAGATAGGCACC CTGCAGCTCGCCATCGCGGCGGCACACTACGGCATCCCCTTTCTTGTCGT CGCGCCGCTCACGTCCTGCGACCCCGAGGTGAGCGTGCTGATGTGGGTCA TTCTCCTTCAAGGGCGAAGAAGTAGAAAATAATCGTGGTGTGCTATTTTT GTCCGGGGCTCCAAGGTCGGGACTCCCAAGTGTCGGTAGGGCTGTCCCTT CTTCACATGTCGCTCGGACCAGTGCTCTGTGGGATGTTGGGTGGGGTTCA GCGTCAGGGACTCTCGATGAAGGTGTTTCGCACGATGTGGTCGGCTTGGT GGTAGCCTTGACGATGTCTGTTTGTCTAGGCGGCCACGGAGTACGTACTA CTCGAGAAAAGCTTTTTTGTTTGACAGACCAGACGCAGCACGAGTATCGG TTGCCCTTGGACCAAGCCTCCCCCCCGTCTCGCATACACAGACCGCCACC GGAGGCGGGATCAGCATTGAAGAACGCCCGGCATCGGAACTCAAGACTGT GGCGGGCACCAAGATAGCGCCGGACGGTATCTCCGCTTGGAACCCTGCGT TCGACGTCACCCCGGCCAGGCTCATCACCGCGATAGTCACGGACAAAGGA TGTGTGCCTAGGAAGGAGGCGACAGAGGACAAGGACTTCGACGTGAAGGC GTTCTGCGAAGCAATGTCTACCGGCCAGGTAGGGTCTGCCGTCTTGATGT GTCGCATCGCCTCGTCGTAGCCAAAGCGCACGTCACGCCTCGTCGTCTCT CTTCCCTCGCATCCATCAACCCGTATGGGCTCGTGAGACTGTGTCGTTCA TATCAGGGGACGGGTACCTCCCTCCACGAGCTTGCTTGTAACTGTAAGCT GTGTCCACGTCGGACTTTCTTCTGGCGTCCGAGGAATTTCAGCTGTGTTT GCCAAGTTTCGACGCCAATCGCTTTACGCTACTGTCGATTCGGGCATCCG TCCAAATGTTGGAAACCAGGCTCATCAGTCTTCGCCCTAACAGCCGTGCG CGATCGGAGGTAAGCGAGACATGCCCGACGTCTCATTACCATCGCACCGT CATTATCTTGTTGCCGTGTGCAGGGGCAACCGGATCAGCCACCCCCTGTC CCGGAAGCCACCGCGCCCTCGGCTTCATTGGAAACCCCTGAGGGATACCG CGCTCTGACCGGAGAGGGGGCGATAGCCCAGTACCTCGCGGGCCTCCCCA AGTGAGCGAAGCGGATAGCGATTTGTATAGTCTTGTCTTTAGCAAGCGAA GACGGAGTAGCGCTCAGAGCAACAGCGGAATAAGTGTGTAGATGGTTGAG ATCTGCCTAGTGTACACCAACTTTTAACCCATGGGCGGCTTGTAGGATGA ATTTGTTGGTCTGTCTTTTGGCCACATGTGGCCGGCGACCCGACGATAAC GGTGTCAGCGGTGGGGTCATAAGCGGTTGGGAAACTCATACCACCCATCT CGACCGATGTCGTCGAAAATACCTGCATGATGTTCTTTGGTCCACGGGTG TGTAACGGTGTGCTTTGTCTCTCGCACGCCGGCAAATCAACGCGGCCGAT TGTCGATGCCATCTTTACTCAACATGAGGTGACCGGCGCGCCGCGAGTCA ACACCTGCCGCAATGCGCGTGATGATTACGCCAAGGTTCAGGTTTTCTAG TCCTCGCTGCCGCGTGCCGTCTCCCCGTGAGCCCTCCCGCTAAGTATAGA CTTGCTCGCGCGCTTCATCGTATTTGCCCCGCGCCCGGGGTCGCGGCTGT TTCACTCCCCCTATCTTTGACGTAGTACACGTAAATGCTAAGAGAGGCGG CTATCACAGCTCCCTTGTGCGGGTCTTGGTTCTTGCCTTCCCAGCCAAGG AGTCATCCCTAGTGAAAAAGGTGATCTGGCGCAACCACTCGAGGTCACCC TTCGGGATTTTCGTCGGCCACAGTAGCGCTGATCGCCGAGACGACATGGA AATCGCTCCTGTGATGTCGGCGATCAGCGGTCGAAGAGTACCCCGAATGG CGGCCTCGAGTGGTTCCACCGGCCGCGTTGATCTCCGTGAAAGGCCGTCT AACATGTGGTGGCGTCTGTTGTCAAGAGAAGACCATGGAGGCCCCAAGGT ATTCTGTTTAAGTGTCCTGTTTCGCACGTGGGATCAAATCCATGACCTGC CGACCGAACAGGGACACTTCTCGTTTCTTCTCCTCGAGCAAAGCAGCAGA GTGCCGCTCCGCCCGACGCACCGGGGGGTGACTTTTCAAAGTGCGCAACT GCCACCCTCTCGGCTCCACATGTCTGTGCGGTTTCGTGCGACTTGTTGGG CTATACACCTGGACTGTCCCTTCCTTCCTACCCTTCCTCACGCTCCGTCT CGCTGTTGGTTTGCGCCTGTTCCGTCACTCGTGCCGCCGAGATAGGGTCA TGGCGCTGATCGGCGCGTCGAGCGCGGCCGACGTCGTGTCGGAGGAGTTC GGGGACGGTAACCTTAACCTCGTCTTCCGCTGCAGGTGAGAGAGAGGGGG ACGGACAGAGAGAGAGAGATGAAAACTCAGAGAGAGAGAAAGAGAAAGAG AAAGAGACAGAGACAGAGACAGAGACAGAGACAGACGGAGAGAGAGAGAG AGAGAGAGAGCCAGACAGACAGACAGACAGACGTACAGAGTGAGAGGAAG ATATATGCATAGAGAGAGAGGTTTGGCGCCGTTACCCTTGGAGTTAATGG AAAACGCCCCCCTTCCATCATGTGCGTCGGAATGCCACCGTGCCTTTTCT ACGAGCCGGTGTTTCGTGGGGGTCAATGTTGCTACTGTTGGTGTCATCAC TTTCACCGGCGCTGCTGCAGGAGTTAGCATTGAACGGCCCTGCAACTAGT TTCCTGAGAACATCGTGTCGTAGTTTACTGGGCTTGGCGCCTTTCAAACG AAAGAGTTTCCGCCGCCCTTTCGCTCCGCGAAACGTTTGGCGTTGTACCG CGTGGCTCCTTCCGCGTGCAATGATCGGCCCTAAACTCTCCGAACTGTTT TTACCCCTCCCACTGAACAACCACTGTCGAAAACGTGCTGGCTACATGTG CCCGGGTTTTTGTCCGGCCCTGAGAAGTGATTCTGATTCCTACTACCCGT GTGTCGACACTTGATCGCGGCAACAGGGGTCCTGCTGGAGACACCGGCGG GACGGTGATCGTGAAGCAAGCTTTGCCCTATGTCCGCTGTGTCGGGGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12942:115..4113+

>mRNA_Ecto-sp13_S_contig12942.2416.1 ID=mRNA_Ecto-sp13_S_contig12942.2416.1|Name=mRNA_Ecto-sp13_S_contig12942.2416.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12942:115..4113+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCGCGCACAGGGCGCTCGCCTGACGGCTTACGAGTTTGTCGCCGACGG
GCTGCCCGGCACGCTTATCCCTGATTCCGCCGCTTCTTTCCTCATGGCTC
AAGGAAAAGTGGATGCCGTCGCGGTCGGCGCCGATAGGGTAGCCGCCAAC
GGGGACACCGCGAACAAGATAGGCACCCTGCAGCTCGCCATCGCGGCGGC
ACACTACGGCATCCCCTTTCTTGTCGTCGCGCCGCTCACGTCCTGCGACC
CCGAGACCGCCACCGGAGGCGGGATCAGCATTGAAGAACGCCCGGCATCG
GAACTCAAGACTGTGGCGGGCACCAAGATAGCGCCGGACGGTATCTCCGC
TTGGAACCCTGCGTTCGACGTCACCCCGGCCAGGCTCATCACCGCGATAG
TCACGGACAAAGGATGTGTGCCTAGGAAGGAGGCGACAGAGGACAAGGAC
TTCGACGTGAAGGCGTTCTGCGAAGCAATGTCTACCGGCCAGGGGCAACC
GGATCAGCCACCCCCTGTCCCGGAAGCCACCGCGCCCTCGGCTTCATTGG
AAACCCCTGAGGGATACCGCGCTCTGACCGGAGAGGGGGCGATAGCCCAG
TACCTCGCGGGCCTCCCCAAGGTCATGGCGCTGATCGGCGCGTCGAGCGC
GGCCGACGTCGTGTCGGAGGAGTTCGGGGACGGTAACCTTAACCTCGTCT
TCCGCTGCAGGGGTCCTGCTGGAGACACCGGCGGGACGGTGATCGTGAAG
CAAGCTTTGCCCTATGTCCGCTGTGTCGGGGAG
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