mRNA_Ecto-sp13_S_contig1292.2402.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1292.2402.1
Unique NamemRNA_Ecto-sp13_S_contig1292.2402.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5JM40_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JM40_9PHAE)

HSP 1 Score: 179 bits (453), Expect = 1.020e-48
Identity = 102/151 (67.55%), Postives = 110/151 (72.85%), Query Frame = -2 
Query:  144 ISDVIGVDLGQLQISKEGRGMMQEDKDADTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVLKKAAADCAVLKTANDPWTTAVFMTVGKQHDGCWTSDRMCAQPPAAIAMFSS*RMGRTSRVSSSSTTPPATMRTTRTRCWPTRSTWRRVGRR 596
            ISDVIG+DLGQLQISKE  GM+QEDKDADTGR GKYFGR EG+   GH+ KEV  AVEVLK A ADCAVLKTANDPWT AV   VG+QHDG WTSDRMCAQ PA IAM           V     +   T+ T +TRCWPTRSTWRRV RR
Sbjct:  669 ISDVIGIDLGQLQISKEAWGMLQEDKDADTGRCGKYFGRKEGEGVHGHEVKEVQGAVEVLKTADADCAVLKTANDPWTAAVI--VGQQHDGYWTSDRMCAQLPAIIAMVELTSGPHRPGVFIFDNSTGTTL-TAKTRCWPTRSTWRRVARR 816
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5JJM4_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJM4_9PHAE)

HSP 1 Score: 171 bits (433), Expect = 8.080e-46
Identity = 89/109 (81.65%), Postives = 94/109 (86.24%), Query Frame = -2 
Query:  270 ISDVIGVDLGQLQISKEGRGMMQEDKDADTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVLKKAAADCAVLKTANDPWTTAVFMTVGKQHDGCWTSDRMCAQPPAAIAMF 596
            ISDVIGVDLGQLQIS+E  GMMQEDKDA T RSGKYFGRTEG+  D HK KE+ +AV+VLKKAAADC VLKTANDP T AV MTVGKQHDG WTSDRMCAQ PAAIAMF
Sbjct:  419 ISDVIGVDLGQLQISEEVWGMMQEDKDAGTERSGKYFGRTEGEGEDSHKVKEIQDAVKVLKKAAADCEVLKTANDPRTAAVIMTVGKQHDGYWTSDRMCAQLPAAIAMF 527
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5KE66_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE66_9PHAE)

HSP 1 Score: 168 bits (425), Expect = 1.990e-45
Identity = 86/108 (79.63%), Postives = 93/108 (86.11%), Query Frame = -2 
Query:  273 ISDVIGVDLGQLQISKEGRGMMQEDKDADTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVLKKAAADCAVLKTANDPWTTAVFMTVGKQHDGCWTSDRMCAQPPAAIAM 596
            ISDVIGVDLGQLQISKE  GMMQEDKDA+TGRSGKYFGR EG+   GH+ KEV +AVEVLK AAADCAVL+TANDPWT AV MTVG+QHD  WTSDRMCA+ PA IAM
Sbjct:  278 ISDVIGVDLGQLQISKEAWGMMQEDKDAETGRSGKYFGRKEGEGVHGHEVKEVQDAVEVLKTAAADCAVLETANDPWTAAVIMTVGQQHDRYWTSDRMCARLPAIIAM 385
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5K550_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K550_9PHAE)

HSP 1 Score: 148 bits (373), Expect = 1.070e-37
Identity = 79/116 (68.10%), Postives = 86/116 (74.14%), Query Frame = -2 
Query:  270 ISDVIGVDLGQLQISKEGRGMMQEDKDA-------DTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVLKKAAADCAVLKTANDPWTTAVFMTVGKQHDGCWTSDRMCAQPPAAIAMF 596
            +SDVIGVDLGQLQIS++  GMMQED D          GRSGKY GRTEG+   GHK KEV EAV++L K AADC VLKTANDP T  V MTVGKQ DG WTSDRMCAQ PAA+A F
Sbjct:  464 VSDVIGVDLGQLQISEQAWGMMQEDYDVLEGGERPTRGRSGKYLGRTEGEGATGHKVKEVQEAVDLLNKTAADCEVLKTANDPRTAVVIMTVGKQQDGYWTSDRMCAQLPAALATF 579
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5JD27_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD27_9PHAE)

HSP 1 Score: 147 bits (372), Expect = 1.110e-37
Identity = 80/108 (74.07%), Postives = 86/108 (79.63%), Query Frame = -2 
Query:  273 ISDVIGVDLGQLQISKEGRGMMQEDKDADTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVLKKAAADCAVLKTANDPWTTAVFMTVGKQHDGCWTSDRMCAQPPAAIAM 596
            ISDVIGVDLGQLQIS+E  GMMQEDKD  TGRSGKYFGR +G+   GH+ KEV +AVEVLK AAADC  LK ANDP T AV M VG+QHDG WTSD MCAQ PA IAM
Sbjct:  287 ISDVIGVDLGQLQISQEAWGMMQEDKDVTTGRSGKYFGR-KGEGVKGHEVKEVQDAVEVLKAAAADCEELKMANDPQTAAVIMPVGQQHDGYWTSDDMCAQLPAIIAM 393
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: D7FZS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS5_ECTSI)

HSP 1 Score: 121 bits (303), Expect = 6.000e-31
Identity = 59/95 (62.11%), Postives = 68/95 (71.58%), Query Frame = -1 
Query:   43 WLLDERSHVRPTAGGYRHVFELTNGPHQQGVFVFDNSSGHNAYDKDALLAHKINLAPGGEKAEFRFFEDDNGTKVYPTFQLGDTLLTDQKIVLPE 327
            W  D      P A      FELT+GPH+QGV +FDNS+GHN YD DALLAHK++LAPGGEK   R FEDDNG  V+PT QLG TLLTD+KI LP+
Sbjct:   11 WTSDRMCAQLPAAIA---TFELTHGPHRQGVSIFDNSTGHNTYDDDALLAHKMSLAPGGEKTALRVFEDDNGRTVHPTPQLGGTLLTDKKIFLPK 102
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5JH07_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH07_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.700e-11
Identity = 42/67 (62.69%), Postives = 48/67 (71.64%), Query Frame = -2 
Query:  417 ISDVIGVDLGQLQISKEGRGMMQEDKDA-------DTGRSGKYFGRTEGDEGDGHKQKEVLEAVEVL 596
            +SDVIGVDLGQLQIS++  GMMQED D          GRSGKY GRTEG+   GHK KEV EAV++L
Sbjct:  781 VSDVIGVDLGQLQISEQAWGMMQEDYDVLEGGERPTRGRSGKYLGRTEGEGAAGHKVKEVQEAVDLL 847
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5K527_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K527_9PHAE)

HSP 1 Score: 70.1 bits (170), Expect = 1.530e-10
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = -1 
Query:   55 VFELTNGPHQQGVFVFDNSSGHNAYDKDALLAHKINLAPGGEKAEFRFFEDDNGTKVYPTFQLGDTLLTDQKI 273
            + ELT+ PH+  V VFDNS+GH AY++ AL+A  I   PGG +     F DD G  V+ TF+ GDT+L D  +
Sbjct: 1003 IHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLLDTHV 1075
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BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5JT56_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT56_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 1.790e-10
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = -1 
Query:   55 VFELTNGPHQQGVFVFDNSSGHNAYDKDALLAHKINLAPGGEKAEFRFFEDDNGTKVYPTFQLGDTLLTDQKI 273
            + ELT+ PH+  V VFDNS+GH AY++ AL+A  I   PGG +     F DD G  V+ TF+ GDT+L D  +
Sbjct:  116 IHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHV 188
[Close]
BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Match: A0A6H5K659_9PHAE (Uncharacterized protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K659_9PHAE)

HSP 1 Score: 69.7 bits (169), Expect = 2.040e-10
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = -1 
Query:   55 VFELTNGPHQQGVFVFDNSSGHNAYDKDALLAHKINLAPGGEKAEFRFFEDDNGTKVYPTFQLGDTLLTDQKI 273
            + ELT+ PH+  V VFDNS+GH AY++ AL+A  I   PGG +     F DD G  V+ TF+ GDT+L D  +
Sbjct:  549 IHELTSEPHRPMVMVFDNSTGHAAYEEGALVASHIQKKPGGGQVILDDFLDDQGNLVHATFREGDTVLFDTHV 621
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1292.2402.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JM40_9PHAE1.020e-4867.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJM4_9PHAE8.080e-4681.65Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KE66_9PHAE1.990e-4579.63Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K550_9PHAE1.070e-3768.10Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD27_9PHAE1.110e-3774.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZS5_ECTSI6.000e-3162.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JH07_9PHAE1.700e-1162.69Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5K527_9PHAE1.530e-1046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT56_9PHAE1.790e-1046.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K659_9PHAE2.040e-1046.58Uncharacterized protein n=3 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1292contigEcto-sp13_S_contig1292:15018..15614 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size599
Hectar predicted targeting categoryother localisation
Exons1
Cds size324
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.2350419-UTR-Ecto-sp13_S_contig1292:15017..152901681462691.2350419-UTR-Ecto-sp13_S_contig1292:15017..15290Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1292 15018..15290 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.244576-CDS-Ecto-sp13_S_contig1292:15290..156141681462691.244576-CDS-Ecto-sp13_S_contig1292:15290..15614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1292 15291..15614 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1292.2402.1prot_Ecto-sp13_S_contig1292.2402.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1292 15291..15614 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1292.2402.1

>prot_Ecto-sp13_S_contig1292.2402.1 ID=prot_Ecto-sp13_S_contig1292.2402.1|Name=mRNA_Ecto-sp13_S_contig1292.2402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=108bp
MAIAAGGWAHMRSLVQQPSCCFPTVMKTAVVQGSFAVFNTAQSAAAFLST
STASRTSFCLWPSPSSPSVLPKYFPERPVSASLSSCIMPRPSLLICSCPR
STPITSEI
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mRNA from alignment at Ecto-sp13_S_contig1292:15018..15614+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1292.2402.1 ID=mRNA_Ecto-sp13_S_contig1292.2402.1|Name=mRNA_Ecto-sp13_S_contig1292.2402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=597bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1292:15018..15614+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTTCCAAACTTGCGCCCCTTGATCTTACTTTGCGCCTCAGTCTTCCGGCA
AGACAATCTTCTGGTCGGTGAGCAGGGTGTCACCTAGCTGGAATGTAGGG
TACACCTTCGTGCCGTTGTCATCCTCGAAAAACCTGAACTCCGCCTTCTC
CCCACCCGGCGCCAAGTTGATCTTGTGGGCCAGCAACGCGTCCTTGTCGT
ACGCATTGTGGCCGGAGGAGTTGTCGAAGACGAAGACACCCTGCTGGTGC
GGCCCATTCGTCAGCTCGAAAACATGGCGATAGCCGCCGGCGGTTGGGCG
CACATGCGATCGCTCGTCCAGCAGCCATCGTGCTGCTTCCCAACGGTCAT
GAAAACAGCAGTCGTCCAAGGGTCGTTCGCTGTCTTCAATACCGCGCAGT
CGGCAGCGGCCTTCTTGAGCACTTCCACCGCCTCTAGAACCTCCTTCTGC
TTGTGGCCATCCCCCTCGTCACCCTCCGTCCTGCCGAAGTACTTTCCAGA
GCGCCCCGTATCGGCATCCTTGTCCTCCTGCATCATGCCCCGACCCTCCT
TGCTGATCTGCAGCTGTCCAAGGTCGACGCCGATCACATCCGAGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1292:15018..15614+

>mRNA_Ecto-sp13_S_contig1292.2402.1 ID=mRNA_Ecto-sp13_S_contig1292.2402.1|Name=mRNA_Ecto-sp13_S_contig1292.2402.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1292:15018..15614+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGATAGCCGCCGGCGGTTGGGCGCACATGCGATCGCTCGTCCAGCA
GCCATCGTGCTGCTTCCCAACGGTCATGAAAACAGCAGTCGTCCAAGGGT
CGTTCGCTGTCTTCAATACCGCGCAGTCGGCAGCGGCCTTCTTGAGCACT
TCCACCGCCTCTAGAACCTCCTTCTGCTTGTGGCCATCCCCCTCGTCACC
CTCCGTCCTGCCGAAGTACTTTCCAGAGCGCCCCGTATCGGCATCCTTGT
CCTCCTGCATCATGCCCCGACCCTCCTTGCTGATCTGCAGCTGTCCAAGG
TCGACGCCGATCACATCCGAGATA
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