mRNA_Ecto-sp13_S_contig12919.2399.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12919.2399.1
Unique NamemRNA_Ecto-sp13_S_contig12919.2399.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: D7G8A6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A6_ECTSI)

HSP 1 Score: 757 bits (1954), Expect = 2.880e-269
Identity = 388/393 (98.73%), Postives = 390/393 (99.24%), Query Frame = 1
Query:    1 IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPEGVKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTK+KQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGL G AGAASGVGGGHFPVTTYATFETGVLSKVEGKIREL+AGLPEGVKMSESESASL SLSATLAASSRYHISKIAPQE
Sbjct:  198 IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKTKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLRGGAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELNAGLPEGVKMSESESASLGSLSATLAASSRYHISKIAPQE 590          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A836CND0_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CND0_9STRA)

HSP 1 Score: 408 bits (1049), Expect = 8.060e-133
Identity = 218/396 (55.05%), Postives = 275/396 (69.44%), Query Frame = 1
Query:    1 IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGG-------HFPVTTYATFETGVLSKVEGKIRELDAGLPEGVKMSESESASLRSLSATLAASSRYHISKI 1167
            I  L+DH GPVRSLD+ P +GF+STSNDG+ R+WS DG+ LATM HP  REGQPAFVL GC L  + GE V+VDE+G CIVWR  +  Q+I HPS LWCV  L  GDF TGCQDH  R++TRAPERAA A+V +AF+ +V + Q  + +GPS +EI+ LP WE++HA  G++E QVQVFQR GKAIAAQWSAASS W+E+GEV G++ +G +DG  +D V+PIE+EG GG VR L+IGYNNG NPF AAQ FIDK ELPQ YL E+AD++TKRAG++ PT+G+  G    AA  GF+GVGDPTGFA A        GR+ + S            H P   + TF+TG + KVE KI E +A       +  +  ASL +L  TL  ++RYH SK+
Sbjct:  196 IAALKDHEGPVRSLDVVPNLGFMSTSNDGTVRVWSTDGSALATMHHPPGREGQPAFVLSGCCL--ESGEYVTVDEAGVCIVWRDCQAVQTIQHPSSLWCVAPLSGGDFVTGCQDHHARIFTRAPERAAAADVVKAFEATVKETQEATAKGPSDMEISKLPHWEQRHALPGRAEQQVQVFQRDGKAIAAQWSAASSAWVEIGEVTGSTNSGTLDGVQYDHVFPIEIEGQGG-VRTLKIGYNNGDNPFSAAQAFIDKYELPQGYLGEVADYITKRAGQAPPTLGVSTGGTPQAAQGGFTGVGDPTGFATA--------GRSSSYSSXXXXXXAAATKHVPAKLFMTFDTGDIGKVEAKILEFNAQAGAAA-LGGAGVASLSALCGTLKVTNRYHASKV 579          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A0W8CHF3_PHYNI (Phospholipase A-2-activating protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A0W8CHF3_PHYNI)

HSP 1 Score: 290 bits (743), Expect = 8.000e-88
Identity = 182/401 (45.39%), Postives = 238/401 (59.35%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGE-SAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIREL-----DAGLPEGVKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KTL DH GP+R L L P +GF+S SNDGS +L +LDGT LA+M HP   EG+P FVL  CVL+   G  VS  E     VW  S  G   Q++ HP GLWCV ALPNGDFATGC D VVRV+T    R  P  VA  F+ +V + +    +GPS VEI ALP +E++ +  G S+GQ+Q+F+R  KA A QWS  S TWI++GEV G    G VDGE +D V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q YL EIAD++T+RA E   P +G D  A  AA           TG A++ P          A +     +FPV+ Y TFET  ++K+   +R+      +A  PE   + +S+  +L  +  T+  ++ YH S  AP E
Sbjct:  167 KTLTDHRGPIRQLALVPDLGFVSCSNDGSIKLRTLDGTVLASMEHPLNAEGKPGFVLGVCVLSN--GFLVSASEDCTARVW--SPEGALIQTVEHPGGLWCVTALPNGDFATGCDDKVVRVFTHDAARVDPNAVAS-FEAAVEEARIAKTRGPSGVEIEALPDYEQRASVNGTSDGQIQMFRRGSKAWACQWSGPSRTWIDIGEVTGTGGGGVVDGEAYDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQTFIDKHMLDQGYLREIADYITQRAAEYRPPVLGNDDSAYSAA-----------TGAASSEP----------AVTASRYKYFPVSGYNTFETIKIAKLMTTLRQFNDKMKEAQAPEA--LIDSQLIALDQIVHTVQDTAFYHSSTFAPPE 538          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: H3GC46_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GC46_PHYRM)

HSP 1 Score: 287 bits (735), Expect = 9.520e-87
Identity = 174/398 (43.72%), Postives = 236/398 (59.30%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPE---GVKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KTL DH GP+R L L P +GF+S SNDGS +L +LDGT +A+M HP   EG+P FVL  CVL    G  VS  E     VW  S  G   Q++ HP GLWCV ALPNGDFATGC D V+RV+T    R  P  VA  F  +V + +   ++GPS VEI +LP ++++ +  G S+GQ+Q+F+R  KA A QWS  S TWI++GEV G    G +DGE +D V P+E+E  GG V+KL+IGYN GQNPF  AQ FIDK+ L Q+YL EIAD++T+RAGE  P +  +  +  +A          P+G A++ P          AA      +FPV  Y TFET  +SK+   +R+ +  + E      + +S+  +L  +  T+  ++ YH S  A  E
Sbjct:  156 KTLADHQGPIRQLALMPDIGFVSCSNDGSIKLRTLDGTVVASMEHPLNAEGKPGFVLGVCVL--GNGFVVSASEDCTARVW--SPEGVLIQTVEHPGGLWCVAALPNGDFATGCDDKVMRVFTHDAARVDPDAVAS-FQAAVEEARIAKQRGPSGVEIESLPDYDQRASVNGNSDGQIQMFRRGTKAWACQWSGPSRTWIDIGEVTGTGGGGVIDGEAYDMVIPVEIELPGG-VKKLEIGYNQGQNPFTVAQEFIDKHTLDQAYLREIADYITQRAGEYRPPVLGNTDSVNSA----------PSGTASSEP----------AAIAPRFKYFPVAGYNTFETTKISKLMSTLRQFNDKMKETGEATALIDSQLIALEQIVHTVQDTAFYHSSTFAALE 527          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A6A3FTY8_9STRA (Uncharacterized protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3FTY8_9STRA)

HSP 1 Score: 282 bits (721), Expect = 3.980e-86
Identity = 174/399 (43.61%), Postives = 231/399 (57.89%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGE-SAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPE---GVKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KTL DH GP+R L L P +GF+S SNDGS +L +LDG  +A+M HP   EG+P FVL   VL+   G  VS  E     VW  S  G   Q++ HP GLWCV ALPNGDFATGC D  VRV+T    R  P  VA  F  +V + +    +GPS VE+ ALP ++++    G S+GQ+Q+F+R  KA A QWS  S TWI++GEV G    G VDGE +D V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q+YL EIAD++T+RAGE   P +G D     A            TG  ++ P            +G    +FPV+ Y TFET  +SK+   + + +  L E      +S+S+  +L  +  T+  ++ YH SK  P E
Sbjct:  189 KTLADHQGPIRQLALVPDIGFVSCSNDGSIKLRTLDGAVVASMEHPLNAEGKPGFVLGVAVLSN--GFLVSASEDCTARVW--SPVGALLQTVEHPGGLWCVTALPNGDFATGCDDKAVRVFTHDAARVDPDAVAS-FQAAVEEARIAKTRGPSGVEVEALPDYDQRAIVNGNSDGQIQMFRRGAKAWACQWSGPSRTWIDIGEVTGTGGGGVVDGEAYDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQEFIDKHMLDQAYLREIADYITQRAGEYRPPVLGNDDSVNSAQ-----------TGTVSSEP----------VTAGSHYKYFPVSGYNTFETTKISKLMSTLHQFNDKLKETNEAATLSDSQLIALGQIVHTVQDTAFYHSSKFTPLE 560          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: G4Z902_PHYSP (Uncharacterized protein n=7 Tax=Phytophthora TaxID=4783 RepID=G4Z902_PHYSP)

HSP 1 Score: 286 bits (732), Expect = 5.000e-86
Identity = 178/399 (44.61%), Postives = 236/399 (59.15%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGE-SAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPEG---VKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KTL DH GP+R L L P +GF+S SNDGS +L +LDG  +A+M HP   EG+P FVL   VL+   G  VS  E     VW  S  G   Q++ HP GLWCV ALPNGDFATGC D VVRV+T    R   A+   +F  +V + +    +GPS VEI ALP ++++ +  G S+GQVQ+F+R  KA A QWS  S TWI++GEV G      VDGE +D V P+EVE  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q+YL EIAD++T+RAGE   P +G + G   A           P+G   + P           A+G    +FPV+ Y TFET  +SK+   +R+ +  L E      +S+S+  +L  +  T+  ++ YH SK AP E
Sbjct:  189 KTLADHQGPIRQLVLVPDIGFVSCSNDGSIKLRTLDGAVVASMEHPLNAEGKPGFVLGVAVLSN--GFVVSASEDCTARVW--SPEGALLQTVEHPGGLWCVTALPNGDFATGCDDKVVRVFTHDAVRV-DADAMASFQAAVEEARIAKTRGPSGVEIEALPDYDQRASVNGNSDGQVQMFRRDTKAWACQWSGPSRTWIDIGEVTGTGGGSVVDGEAYDMVIPVEVELPGG-LKKLEIGYNQGQNPFTVAQEFIDKHMLDQAYLREIADYITQRAGEYRPPVLGNNDGVNSA-----------PSGGVQSEP----------VATGPQCKYFPVSGYNTFETIKISKLMSTLRQFNDKLKESNETATLSDSQLIALEQIVHTVQGTAFYHSSKFAPLE 560          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: D0NSL9_PHYIT (Phospholipase A-2-activating protein, putative n=11 Tax=Phytophthora TaxID=4783 RepID=D0NSL9_PHYIT)

HSP 1 Score: 284 bits (726), Expect = 4.000e-85
Identity = 178/399 (44.61%), Postives = 235/399 (58.90%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGE-SAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPEGVK---MSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KTL DH GP+R L L P +GF+S SNDGS +L +LDGT LA+M HP   EG+P FVL  CVL+   G  VS  E     VW  S+ G   Q++ HP GLWCV AL NGDFATGC D VVRV+T    R  P+ VA  F  +V D +    +GPS VEI ALP ++ + +  G S+GQ+Q+F+R  KA A QWS  S TWI++GEV G    G VDGE FD V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q YL EIAD++T+RA E   P +G D            S +  P+G A      P   G A  +S     +FPV  Y TFET  ++K+   +R+ +  + E      + +S+  +L  ++ T+  ++ +H S  A  E
Sbjct:  189 KTLTDHQGPIRQLALVPDIGFVSCSNDGSIKLRALDGTVLASMEHPLNTEGKPGFVLGVCVLSN--GFLVSASEDCTARVW--SQEGALVQTVEHPGGLWCVTALGNGDFATGCDDKVVRVFTHDAARMDPSAVAS-FQAAVDDARIAKTRGPSGVEIDALPDYDHRASVNGSSDGQIQMFRRGAKAWACQWSEPSRTWIDIGEVTGTGGGGVVDGEAFDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQAFIDKHMLDQGYLREIADYITQRAAEYRPPVLGND-----------DSAISTPSGAA------PTCSGSAVTSSRYK--YFPVPGYNTFETTKITKLMATLRQFNDKMKESQAPEALIDSQLIALDQIAHTVQDTAFFHSSTFAAAE 562          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A3F2RGZ7_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RGZ7_9STRA)

HSP 1 Score: 277 bits (709), Expect = 1.170e-82
Identity = 169/403 (41.94%), Postives = 234/403 (58.06%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERG---QSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTI-----GMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPEG---VKMSESESASLRSLSATLAASSRYHISKIAPQE 1179
            KT+ DH GP+R L L P +GF+S SNDGS +L +LDG  LA+M HP   EG+P FVL  CVL+   G  VS  E     VW  S  G   Q++ HP GLWCV  LPNGDFATGC D  VRV+T    R  P  VA  F  ++ + +    +GPS VEI +LP ++++ + +G S+GQ+Q+F+R  KA A QWS  S TWI++GEV G    G VDGE +D V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q+YL EIAD++T+RA +  P +      ++A  +G A+A            + AAP                  +FPV+ Y TFET  ++K+   +R+ +  + E      + +S+  +L  +  T+  ++ YH S  AP E
Sbjct:  189 KTMTDHQGPIRQLALVPNIGFVSCSNDGSIKLRTLDGAVLASMEHPLNTEGKPGFVLGVCVLSS--GFLVSASEDCTARVW--SPEGALVQTVEHPGGLWCVTGLPNGDFATGCDDKTVRVFTHDAARVDPDAVAS-FQAALEEARIAKTRGPSGVEIESLPDYDQRASVQGSSDGQIQMFRRGTKAWACQWSGPSRTWIDIGEVTGTGGGGVVDGEAYDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQEFIDKHTLDQAYLREIADYITQRANDYQPPVLGNNDSVNAATSGTASAE----------VSAAAPQFK---------------YFPVSGYNTFETTKIAKLMSTLRQFNDKMTESKDTAVLIDSQLIALDQIIHTVQDTAFYHSSMFAPAE 560          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A3M6VC49_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VC49_9STRA)

HSP 1 Score: 278 bits (710), Expect = 3.760e-82
Identity = 167/397 (42.07%), Postives = 231/397 (58.19%), Query Frame = 1
Query:    1 IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSER-GQSIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVGDPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKIRELDAGLPEGVK---MSESESASLRSLSATLAASSRYHISKIAPQE 1179
             KTL DH GP+R L L P  GF+S SNDGS +  +LDG  +A+M HP   EG+P FVL  CVL+   G  VS  E     VW       Q+I HP GLWCV  LPNGDFATGC D +VRV+T  P    P  VA  F  +V + +    +GPS VEI +LP ++++ +  G S+ Q+Q+F+R  KA A QWS  S TWI++GEV G    G VDGE +D V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L QSYL EIAD++T+RAGE  P +  +  +  + ++   +G  +PT  A+                     +FPV+ Y TFET  +SK+   +R+ +  + +      +++S+  +L  +  T+  ++ YH S  AP E
Sbjct:  184 FKTLMDHKGPIRQLALVPDSGFVSCSNDGSIKHRTLDGVVVASMEHPLNAEGKPGFVLGVCVLSN--GLVVSASEDCTARVWSADGALVQTIEHPGGLWCVSPLPNGDFATGCDDKIVRVFTHDPAHVDPDAVAS-FQAAVEEARIAKTRGPSGVEIESLPNYDQRASVTGTSDSQIQMFRRGTKAWACQWSGPSRTWIDIGEVTGTGNGGVVDGEAYDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQEFIDKHVLDQSYLREIADYITQRAGEYRPPVLENNDSVNSVSSG--NGSHEPTVAASRYK------------------YFPVSGYNTFETTKISKLMSTLRQFNDKMKDTQDTDALTDSQLIALDHIVFTVQDTAFYHSSTFAPPE 556          
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Match: A0A662XME6_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XME6_9STRA)

HSP 1 Score: 275 bits (704), Expect = 8.770e-82
Identity = 145/283 (51.24%), Postives = 188/283 (66.43%), Query Frame = 1
Query:    4 KTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATREGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQ---SIPHPSGLWCVCALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQGPSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEVGEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQNFIDKNELPQSYLNEIADHLTKRAGESAPTI 843
            +TL DH GP+R L L P +GF+S SNDGS +L +LDG  LA+M HP   EG+P FVL  CVL+   G  VS  E     VW  S +GQ   ++ HP GLWCV ALPNGDFATGC + +VRV+T    R  P  VA  F ++V + Q   ++GPS VEI +LP ++++    G S+GQ+Q+F+R  KA A QWS  S TW+++GEV G    G VDGE FD V P+E+E  GG ++KL+IGYN GQNPF  AQ FIDK+ L Q YL EIAD++T+RAG+  P +
Sbjct:  207 QTLVDHQGPIRQLALVPDLGFVSCSNDGSIKLRTLDGVVLASMEHPLNAEGKPGFVLGVCVLSS--GLLVSASEDCTARVW--SPQGQLLQTVEHPGGLWCVAALPNGDFATGCDNKIVRVFTGDAARVDPEAVAS-FQRAVEEAQIAKQRGPSGVEIESLPDYDQRAGLSGNSDGQIQMFRRGSKAWACQWSGPSKTWVDIGEVTGTGGGGVVDGEAFDMVIPVEIELPGG-LKKLEIGYNQGQNPFTVAQTFIDKHMLDQGYLREIADYITQRAGDYRPPV 483          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12919.2399.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8A6_ECTSI2.880e-26998.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836CND0_9STRA8.060e-13355.05WD40-repeat-containing domain protein n=1 Tax=Trib... [more]
A0A0W8CHF3_PHYNI8.000e-8845.39Phospholipase A-2-activating protein n=2 Tax=Phyto... [more]
H3GC46_PHYRM9.520e-8743.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A6A3FTY8_9STRA3.980e-8643.61Uncharacterized protein n=2 Tax=Phytophthora fraga... [more]
G4Z902_PHYSP5.000e-8644.61Uncharacterized protein n=7 Tax=Phytophthora TaxID... [more]
D0NSL9_PHYIT4.000e-8544.61Phospholipase A-2-activating protein, putative n=1... [more]
A0A3F2RGZ7_9STRA1.170e-8241.94Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A3M6VC49_9STRA3.760e-8242.07Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
A0A662XME6_9STRA8.770e-8251.24Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12919contigEcto-sp13_S_contig12919:107..4889 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score757.7
Seed ortholog evalue2.7e-216
Seed eggNOG ortholog2880.D7G8A6
Preferred namePLAA
Model size1179
KEGG rclassRC00002,RC00010,RC00043,RC02750,RC02798,RC03314
KEGG koko:K01090,ko:K01955,ko:K11412,ko:K14018
KEGG ReactionR00256,R00575,R01395,R10948,R10949
KEGG Pathwayko00240,ko00250,ko01100,ko04141,map00240,map00250,map01100,map04141
KEGG ModuleM00051
Hectar predicted targeting categoryother localisation
GOsGO:0000726,GO:0001558,GO:0002237,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006082,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006325,GO:0006464,GO:0006508,GO:0006511,GO:0006629,GO:0006631,GO:0006644,GO:0006690,GO:0006692,GO:0006693,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006914,GO:0006950,GO:0006952,GO:0006954,GO:0006974,GO:0006996,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0008047,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009605,GO:0009607,GO:0009617,GO:0009892,GO:0009987,GO:0010033,GO:0010498,GO:0010517,GO:0010518,GO:0010605,GO:0010720,GO:0010975,GO:0010976,GO:0010992,GO:0016004,GO:0016005,GO:0016043,GO:0016236,GO:0016567,GO:0016569,GO:0016570,GO:0016574,GO:0019222,GO:0019538,GO:0019637,GO:0019725,GO:0019752,GO:0019941,GO:0022008,GO:0022603,GO:0022604,GO:0023052,GO:0030154,GO:0030163,GO:0030234,GO:0030307,GO:0030334,GO:0030335,GO:0031323,GO:0031324,GO:0031344,GO:0031346,GO:0031396,GO:0031397,GO:0031399,GO:0031400,GO:0031982,GO:0032182,GO:0032268,GO:0032269,GO:0032429,GO:0032430,GO:0032446,GO:0032496,GO:0032501,GO:0032502,GO:0032787,GO:0032879,GO:0033554,GO:0033559,GO:0033993,GO:0034517,GO:0034641,GO:0035973,GO:0036211,GO:0040008,GO:0040012,GO:0040017,GO:0042221,GO:0042592,GO:0043085,GO:0043130,GO:0043161,GO:0043162,GO:0043170,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043230,GO:0043231,GO:0043412,GO:0043436,GO:0043632,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044255,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044281,GO:0044421,GO:0044424,GO:0044464,GO:0045202,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0045927,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048638,GO:0048639,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051049,GO:0051050,GO:0051094,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051239,GO:0051240,GO:0051246,GO:0051248,GO:0051270,GO:0051272,GO:0051276,GO:0051336,GO:0051345,GO:0051603,GO:0051704,GO:0051707,GO:0051716,GO:0051960,GO:0051962,GO:0060191,GO:0060193,GO:0060229,GO:0060255,GO:0060284,GO:0060341,GO:0061912,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070062,GO:0070647,GO:0070887,GO:0071216,GO:0071219,GO:0071222,GO:0071310,GO:0071396,GO:0071704,GO:0071840,GO:0072671,GO:0080090,GO:0090304,GO:0098693,GO:0098772,GO:0120035,GO:1900044,GO:1900045,GO:1901360,GO:1901564,GO:1901565,GO:1901568,GO:1901575,GO:1901700,GO:1901701,GO:1902914,GO:1902915,GO:1903320,GO:1903321,GO:1903421,GO:1903423,GO:1903561,GO:1903859,GO:1903861,GO:2000026,GO:2000145,GO:2000147,GO:2001222,GO:2001224
Exons8
EggNOG free text desc.phospholipase A2 activator activity
EggNOG OGsKOG0301@1,KOG0301@2759
EC3.1.3.16,6.3.5.5
Cds size1179
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12919.2399.1prot_Ecto-sp13_S_contig12919.2399.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12919 107..4889 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462691.1260388-CDS-Ecto-sp13_S_contig12919:106..2831681462691.1260388-CDS-Ecto-sp13_S_contig12919:106..283Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 107..283 +
1681462691.13794-CDS-Ecto-sp13_S_contig12919:843..10051681462691.13794-CDS-Ecto-sp13_S_contig12919:843..1005Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 844..1005 +
1681462691.1470785-CDS-Ecto-sp13_S_contig12919:1322..14301681462691.1470785-CDS-Ecto-sp13_S_contig12919:1322..1430Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 1323..1430 +
1681462691.1563537-CDS-Ecto-sp13_S_contig12919:1732..18911681462691.1563537-CDS-Ecto-sp13_S_contig12919:1732..1891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 1733..1891 +
1681462691.1667845-CDS-Ecto-sp13_S_contig12919:2389..24961681462691.1667845-CDS-Ecto-sp13_S_contig12919:2389..2496Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 2390..2496 +
1681462691.176923-CDS-Ecto-sp13_S_contig12919:3236..33681681462691.176923-CDS-Ecto-sp13_S_contig12919:3236..3368Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 3237..3368 +
1681462691.1978097-CDS-Ecto-sp13_S_contig12919:4005..42461681462691.1978097-CDS-Ecto-sp13_S_contig12919:4005..4246Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 4006..4246 +
1681462691.2076802-CDS-Ecto-sp13_S_contig12919:4796..48891681462691.2076802-CDS-Ecto-sp13_S_contig12919:4796..4889Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12919 4797..4889 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12919.2399.1

>prot_Ecto-sp13_S_contig12919.2399.1 ID=prot_Ecto-sp13_S_contig12919.2399.1|Name=mRNA_Ecto-sp13_S_contig12919.2399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=393bp
IKTLRDHSGPVRSLDLAPGMGFLSTSNDGSARLWSLDGTPLATMPHPATR
EGQPAFVLQGCVLTGDGGESVSVDESGGCIVWRGSERGQSIPHPSGLWCV
CALPNGDFATGCQDHVVRVWTRAPERAAPAEVAQAFDQSVIDGQTKSKQG
PSAVEIAALPKWEEQHATRGKSEGQVQVFQRAGKAIAAQWSAASSTWIEV
GEVMGASEAGQVDGETFDRVYPIEVEGVGGAVRKLQIGYNNGQNPFVAAQ
NFIDKNELPQSYLNEIADHLTKRAGESAPTIGMDAGAAGAAAAAGFSGVG
DPTGFANAAPPPPGLGGRAGAASGVGGGHFPVTTYATFETGVLSKVEGKI
RELDAGLPEGVKMSESESASLRSLSATLAASSRYHISKIAPQE
back to top

mRNA from alignment at Ecto-sp13_S_contig12919:107..4889+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12919.2399.1 ID=mRNA_Ecto-sp13_S_contig12919.2399.1|Name=mRNA_Ecto-sp13_S_contig12919.2399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4783bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12919:107..4889+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGACCCTCAGGGACCACTCGGGCCCCGTCCGGTCGTTGGACCTTGC CCCCGGGATGGGATTTTTGTCCACCTCTAACGATGGAAGCGCCAGGCTTT GGTCGTTGGACGGCACCCCCCTGGCCACGATGCCTCACCCGGCCACGAGG GAGGGGCAGCCGGCGTTCGTGCTGCAGGTGAGCGTACCGCCGTAGTAACA GAGAAGGGAATTGAAAAGTGTAGAGAGAATGCTGGTGGCAAGCGTACGAG TGTAGGGAAGAGAAGAGTAGAGGAGATTTCTGATGGTAAGCGTACCCATG TAGCGAAAGAGAAGAGGAGGGAGGAGAGAAGAGAAGGGAGTGAAGAGGAG AAAAGAGAAGGAGAGAAAAGTGCTGAAGGCAAGCGTGTACGCGCACCCAC AAAGAAGAGGAGGGGAGGAGAGGAGAGAAAGGAAAGGAAGAGGAGACAAG AGGAGGGTGTGCGCTCATGTTTTGCCTGACGTAGTTGTTAGACCATAGAC CACGCGTGCTCGCGAGGACGGAGCGTTGTGTTCCACAGGATCACCGACGG TCAACAATTCCTTCTTACTGTGCCAAAGGTCCCTGAATGTTGTTTCGCTT CTCAGGGGTGTCTCCGTCGGGGACTTGCGGTACACCTGCCTGCCAACTCT CACGACTACCCCTGTGTCCGCGGTTGTTCTCGTTGCCGTTTTTTCCTTGT TCTTATGATGGGGTGGGGATTTATTCACCGCGTGCAGGGGTGCGTTCTGA CTGGTGACGGCGGGGAGTCCGTGAGTGTTGACGAGAGCGGTGGGTGTATC GTCTGGAGGGGGTCGGAGAGGGGCCAGTCCATCCCGCACCCCTCGGGGCT GTGGTGCGTCTGCGCTCTTCCGAACGGGGACTTCGCCACGGGTTGCCAGG TATGGTGGGGTGGGGGAGGCGAAATCATGACCCATTCCGCGTCGTCGCAT TCTTTTTAGGGTTGGAATTCATCGGCCTTTTGTTGCTGTTGTTGTGGTGA GACATTCGAACTACAACGGCAGCAGTTTGTACTCAACGAAAGAATTGCCC CCCCTATCATTATCTGGGCTAAGCCCCCTCATGCCCCACCCCGCCCCGGC AATGCAAGGAATGCGAGCGTCTTCGTGGCTGAAACACACTTCAATGCGTG ACACACCAGTTGGATGATCGCACGCACGTTTCCGCCGCCGCCTTGTCTCG ACTTGTGTGTGCGTAGGACCACGTCGTGAGGGTGTGGACCAGGGCACCGG AGCGCGCGGCGCCCGCAGAGGTGGCGCAAGCGTTCGATCAGTCGGTCATC GATGGACAGACCAAGAGCAAGCAGGTTTGGTTGGTGGCGGTGGTGGTTGC AATGCTAATCGTGTTGTCGTGATTTGGTTGTGGTGGTAGTGGTGACAGTT CTTTTAGTTTTGCTGTACTTGTTGTGGTGTTGGTGGTGACAGTGCTATTA GGTGTTAGTTTTCGTGGTGGTTTGAGGTTTGTGGTTGTTCGGTGGCTTTG ACGTGATATAGAAAACCCCATCGTCGCTCGGTCGGTCCCCGGTATCTTTG CTGAGTGGGTAACAAACGTGTTTGACAGCACGCCTACCCCCTGCGTTCTT GTTCTTGGGAAACCCCCGAACTTCAGGGGCCGAGCGCGGTGGAGATCGCG GCCCTCCCCAAGTGGGAAGAGCAGCACGCCACCCGAGGGAAGTCGGAGGG GCAGGTACAGGTGTTCCAGAGGGCCGGGAAGGCGATAGCTGCGCAGTGGA GCGCGGCGTCGTCTACGTGGATCGAGGTCGGGGAGGTGAGCCGTGGTTTT TCGTTCGCAAGGAGAGAGCGGGGCGTCGTGATTCGTTTTACGGTTTTACC GACTCGATTTTGTGGAACGCGGTGTCGTTGATCGGGGTCGGGGTCGGGAA GCCGTGGTTTTCGCAGAGAGAGAGAGAGACAGAGAGAGAGAGAAACACAG AGAGAGAGAGGCAGACAGTAACAGGAAGAGACAGAGAGGAAGATAATATG ATCTTCGGCAGCGGGGTGTACGAAAGGCCAAACGGGTGGTGTATAAAACT GTTGCTATCTGTCAGAGAAAACATGAATATTGGTCATCTTCTCTACCTTG GACAGTTTTGTCGTAGTTTTCGTCTTTTGTGTGTACGTCCTCCGGTCGAA AGATTACCGCGTGCCTGGTCGTCATCATCACACCGATCCTTACTGGTTTC TTCCCAAGGTGATGCACTGCTACATATCTCAGCGTCGCGTTTTATTATTT TTGTGCCTTGCGCCACCCCGTGGTGTTTGCCAGGTAATGGGAGCCAGCGA GGCTGGGCAGGTGGACGGAGAGACGTTCGATAGGGTCTACCCCATCGAGG TGGAGGGGGTCGGCGGAGCGGTCCGCAAGCTGCAGATCGGGTGGGTCGTG TTGTTGGGTGGACGTGGACCGAGGGGGGTTGGAATTTTGATGGCTACGCT CTCTCCTTTTATCAATGTAGAAGCACCTTCATTTTCCAATACTGCTGTAT GCAGATCGGCTTGGTCGTGTTGTTGGGTGTACGTGGACCGAGAGGGGTTG GTTGTTGATGGCTACGCTCTCTCCTTGTTGTCAATGAAGAAGCACCTGTA TTTTCCAATACTGCTGTAAGACGGCTGTTTGAATTTTTTCCAACGTAGTG TGACCAATTAAAGTGTGAAGCGTGTCACCTGTGTTCTCCCTCCCCAACAT GTTTTAGGCGTTCCCATTTTTTTCCTGCTTGAGAAACTTATGGACAGAAT TATTGCTGTGGCCCAAATCGTTGTTTGACGTGCTCGAGAAAACGTGGTGC GTCGTGTTGCTCGTCTACGTTTCACCCAGCCGTTTCGTGTTCACCGTTGT TGCTGCTGTTATTATTGTTGTTGCTGTCATTGTCGTTATATTCAATCGTT TTGTGTGTACATAGGCGCCTACATGCTTTCTTGTAAGGCAGTACTGACTG CGCCAACCTGACCAATGAACGTACGCGATCAGGCTCCTTCGTGTGCCGTT TGTTGTTGACATCGACCCGCGCTAATCGGCTGACCGATCGAAAACTTCCC AAGGCTCAGTGCCGCTGAAACCGCTTCTAATGCCATGCTTGACCCCGTGT TTGCGGCGTGTGTACGGATACGACGGACAGGTACAATAACGGGCAGAACC CCTTTGTGGCGGCACAGAACTTCATCGACAAGAACGAGCTGCCGCAGAGC TACCTCAACGAGATCGCCGACCACCTGACGAAGAGAGCGGGAGAGAGCGC GCCTACGATCGGGTGAGCGAGTCAGTGGGTAATGTCTTCCTTCTTCCCTT CCTTCCTTCCCGTGGGCATGATCACGATTGCGCGTTCAACGAACAACAAC GATAGCAAGGCATGGCGTGGACCTCAAAAGCGCAAAAGCGAAACCACATC GTCGCCCCAAGTGGGGGGGGGGGGTACTCTCATGTTTTGCAAGCCTCAGC GGGGAGACCATTGGCCACGTGTCCTCGAGAGGATGGAGCTTTGGACCGAT CACCGATTGCCAATCTTTCTTTCCTACTTGGCCAAAGGTGATCAAAACGT TTTCCCTAGCCTGTCTACATCACTCCCCGCCTTTCAGCCCACTTCCTTTG CCCCAGTACAGCTACCGTTTTCTCCTGCCCTGGGCTTTTTTTTTTGCCAC CTCTTGCTGCATCCTGCTCTAGGCTGTCCGTCGCCGTTTTTTCGCCAGCG GGAACCTTGTGCGTGGCCGCGCTAGTTCAAGATATTTACCAGAGGACTTC ACGGATGTTAGGGGAGTGATATGAACGATATGCCGCACTACTTGTCAACT ACAGGTGTGCTGCTTTGCTCTGCCAAAAGCCCCATTGAAACGACTGGATT GATGCCCGCCCCTGCACATGCTTCCGTTTGTGTTGCTTTGTATGGTCAGC ATGGACGCTGGCGCAGCAGGCGCGGCGGCAGCGGCCGGTTTCAGCGGTGT CGGCGACCCCACCGGCTTCGCGAACGCCGCGCCGCCGCCGCCGGGGCTTG GGGGGCGGGCGGGCGCGGCTTCGGGGGTGGGCGGGGGGCACTTCCCCGTG ACCACCTATGCGACGTTCGAGACAGGGGTGCTGTCGAAAGTGGAAGGCAA GATACGAGAGCTGGATGCCGGGCTTCCGGAAGGGGTGAAGGTGCGCGGAA AACGAATGGCCGAGAGAGGGGCGTCGTTGTGGTTGCGTGTGTATGTGTGT GTGTGTGTGAACGTGCACCAACCGCGTTAACCTGCTAGCCATGAGAAGAC GCCAGTCTTACATCGTGGTGTGTAGACGTCAACGTTGACGCCTGTCCGTT CGACGCAAGCCGACTGTGAGTTAGGTATCAGCAACGTCATGCCCGTGCTA TAGCATATCACGAATGTTATTATTTGCCTGAAATACCTCCTGCCCGGCGG CCACTGTGGGAGGATTAACCAAGACTACGATGGTGTCTAGTCGTGTCTTC GAACCTCCTATCTGTCGTTCTTGACTAGCGAAAACACTATCCAAGGGAAA GTGTTTTCGGAGGTGGTACACGAGTTCGTCTTCCGGAAACCCAAGAATTC CACCTCCGAGATGTGTTGATCGATTAACGCTTTCGCAGTTCTAGCGTGTA ATCACTTATTTCACCTCTGACAATTGATTACGAACATGTACCCCCCACTC AAGCATAACTTCGGCCGAACATGTATGAAACTGGTCTCAGATGTCAGAGA GCGAGTCGGCGTCTCTGCGATCGCTGTCGGCTACCCTCGCGGCAAGCAGC AGATATCACATCTCCAAGATCGCGCCGCAAGAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12919:107..4889+

>mRNA_Ecto-sp13_S_contig12919.2399.1 ID=mRNA_Ecto-sp13_S_contig12919.2399.1|Name=mRNA_Ecto-sp13_S_contig12919.2399.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1179bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12919:107..4889+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCAAGACCCTCAGGGACCACTCGGGCCCCGTCCGGTCGTTGGACCTTGC
CCCCGGGATGGGATTTTTGTCCACCTCTAACGATGGAAGCGCCAGGCTTT
GGTCGTTGGACGGCACCCCCCTGGCCACGATGCCTCACCCGGCCACGAGG
GAGGGGCAGCCGGCGTTCGTGCTGCAGGGGTGCGTTCTGACTGGTGACGG
CGGGGAGTCCGTGAGTGTTGACGAGAGCGGTGGGTGTATCGTCTGGAGGG
GGTCGGAGAGGGGCCAGTCCATCCCGCACCCCTCGGGGCTGTGGTGCGTC
TGCGCTCTTCCGAACGGGGACTTCGCCACGGGTTGCCAGGACCACGTCGT
GAGGGTGTGGACCAGGGCACCGGAGCGCGCGGCGCCCGCAGAGGTGGCGC
AAGCGTTCGATCAGTCGGTCATCGATGGACAGACCAAGAGCAAGCAGGGG
CCGAGCGCGGTGGAGATCGCGGCCCTCCCCAAGTGGGAAGAGCAGCACGC
CACCCGAGGGAAGTCGGAGGGGCAGGTACAGGTGTTCCAGAGGGCCGGGA
AGGCGATAGCTGCGCAGTGGAGCGCGGCGTCGTCTACGTGGATCGAGGTC
GGGGAGGTAATGGGAGCCAGCGAGGCTGGGCAGGTGGACGGAGAGACGTT
CGATAGGGTCTACCCCATCGAGGTGGAGGGGGTCGGCGGAGCGGTCCGCA
AGCTGCAGATCGGGTACAATAACGGGCAGAACCCCTTTGTGGCGGCACAG
AACTTCATCGACAAGAACGAGCTGCCGCAGAGCTACCTCAACGAGATCGC
CGACCACCTGACGAAGAGAGCGGGAGAGAGCGCGCCTACGATCGGCATGG
ACGCTGGCGCAGCAGGCGCGGCGGCAGCGGCCGGTTTCAGCGGTGTCGGC
GACCCCACCGGCTTCGCGAACGCCGCGCCGCCGCCGCCGGGGCTTGGGGG
GCGGGCGGGCGCGGCTTCGGGGGTGGGCGGGGGGCACTTCCCCGTGACCA
CCTATGCGACGTTCGAGACAGGGGTGCTGTCGAAAGTGGAAGGCAAGATA
CGAGAGCTGGATGCCGGGCTTCCGGAAGGGGTGAAGATGTCAGAGAGCGA
GTCGGCGTCTCTGCGATCGCTGTCGGCTACCCTCGCGGCAAGCAGCAGAT
ATCACATCTCCAAGATCGCGCCGCAAGAG
back to top