mRNA_Ecto-sp13_S_contig12900.2389.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12900.2389.1
Unique NamemRNA_Ecto-sp13_S_contig12900.2389.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12900.2389.1 vs. uniprot
Match: D7FZZ3_ECTSI (Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZZ3_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 2.310e-45
Identity = 86/102 (84.31%), Postives = 87/102 (85.29%), Query Frame = 1 
Query:    1 GGARWAV-TGQGLKGVYRAWMTCWGKGGKRMGRLMRRRLGRGAYHLRVDDPPRFGRSVERVLLLSWGLAVVLAGFVERAGGVCWCIVLLAVGVRPHAAEEGV 303
            GGAR A  TGQGLKGVYRAWMTCW KGGKR GRLM+RRLGRGA H RVDDP RFGRSVERVL LSWGLAVVLA FVERA GVCWCIVLL VGV  HAAE GV
Sbjct:  496 GGARQAAATGQGLKGVYRAWMTCWEKGGKRTGRLMKRRLGRGACHHRVDDPRRFGRSVERVLPLSWGLAVVLACFVERAAGVCWCIVLLVVGVSRHAAEGGV 597
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BLAST of mRNA_Ecto-sp13_S_contig12900.2389.1 vs. uniprot
Match: A0A6H5LLK6_9PHAE (Peptidase A1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLK6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 1.430e-18
Identity = 45/46 (97.83%), Postives = 45/46 (97.83%), Query Frame = 3 
Query:    6 GSLGGDGAGPEGSLQGVDDVLGKGWKAYGSTDEASAGAGCLPPSSR 143
            GS GGDGAGPEGSLQGVDDVLGKGWKAYGSTDEASAGAGCLPPSSR
Sbjct:  462 GSPGGDGAGPEGSLQGVDDVLGKGWKAYGSTDEASAGAGCLPPSSR 507
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12900.2389.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FZZ3_ECTSI2.310e-4584.31Pepsinogen n=1 Tax=Ectocarpus siliculosus TaxID=28... [more]
A0A6H5LLK6_9PHAE1.430e-1897.83Peptidase A1 domain-containing protein n=1 Tax=Ect... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12900contigEcto-sp13_S_contig12900:270..674 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score166.0
Seed ortholog evalue1.2e-38
Seed eggNOG ortholog2880.D7FZZ3
Model size405
KEGG koko:K01379,ko:K01382
KEGG Pathwayko04071,ko04140,ko04142,ko04210,ko04915,ko05152,map04071,map04140,map04142,map04210,map04915,map05152
Hectar predicted targeting categorymitochondrion
Exons1
EggNOG free text desc.aspartic-type endopeptidase activity
EggNOG OGsKOG1339@1,KOG1339@2759
EC3.4.23.34,3.4.23.5
Cds size405
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462690.43616-CDS-Ecto-sp13_S_contig12900:269..6741681462690.43616-CDS-Ecto-sp13_S_contig12900:269..674Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12900 270..674 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12900.2389.1prot_Ecto-sp13_S_contig12900.2389.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12900 270..674 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12900.2389.1

>prot_Ecto-sp13_S_contig12900.2389.1 ID=prot_Ecto-sp13_S_contig12900.2389.1|Name=mRNA_Ecto-sp13_S_contig12900.2389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=135bp
GGARWAVTGQGLKGVYRAWMTCWGKGGKRMGRLMRRRLGRGAYHLRVDDP
PRFGRSVERVLLLSWGLAVVLAGFVERAGGVCWCIVLLAVGVRPHAAEEG
VCLFPSAVVPWESNGDRVRCTIERACFVTLLLVC*
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mRNA from alignment at Ecto-sp13_S_contig12900:270..674-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12900.2389.1 ID=mRNA_Ecto-sp13_S_contig12900.2389.1|Name=mRNA_Ecto-sp13_S_contig12900.2389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12900:270..674- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGGCTCGTTGGGCGGTGACGGGGCAGGGCCTGAAGGGAGTTTACAG
GGCGTGGATGACGTGTTGGGGAAAGGGTGGAAAGCGTATGGGTCGACTGA
TGAGGCGTCGGCTGGGGCGGGGTGCTTACCACCTTCGAGTAGATGATCCG
CCGAGATTTGGTAGATCGGTAGAGAGGGTGCTGCTCTTGTCATGGGGCTT
GGCTGTCGTCCTTGCAGGTTTTGTTGAGAGGGCGGGAGGCGTTTGTTGGT
GTATCGTCTTATTAGCCGTTGGCGTCAGGCCTCATGCAGCAGAAGAAGGG
GTTTGTTTGTTCCCTTCGGCGGTTGTCCCGTGGGAGAGCAATGGTGATAG
GGTTAGATGCACAATTGAACGGGCGTGTTTTGTAACTCTCCTGCTCGTGT
GCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12900:270..674-

>mRNA_Ecto-sp13_S_contig12900.2389.1 ID=mRNA_Ecto-sp13_S_contig12900.2389.1|Name=mRNA_Ecto-sp13_S_contig12900.2389.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=405bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12900:270..674- (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGGCTCGTTGGGCGGTGACGGGGCAGGGCCTGAAGGGAGTTTACAG
GGCGTGGATGACGTGTTGGGGAAAGGGTGGAAAGCGTATGGGTCGACTGA
TGAGGCGTCGGCTGGGGCGGGGTGCTTACCACCTTCGAGTAGATGATCCG
CCGAGATTTGGTAGATCGGTAGAGAGGGTGCTGCTCTTGTCATGGGGCTT
GGCTGTCGTCCTTGCAGGTTTTGTTGAGAGGGCGGGAGGCGTTTGTTGGT
GTATCGTCTTATTAGCCGTTGGCGTCAGGCCTCATGCAGCAGAAGAAGGG
GTTTGTTTGTTCCCTTCGGCGGTTGTCCCGTGGGAGAGCAATGGTGATAG
GGTTAGATGCACAATTGAACGGGCGTGTTTTGTAACTCTCCTGCTCGTGT
GCTGA
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