mRNA_Ecto-sp13_S_contig12884.2373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12884.2373.1
Unique NamemRNA_Ecto-sp13_S_contig12884.2373.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: D7FXF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF1_ECTSI)

HSP 1 Score: 551 bits (1419), Expect = 9.330e-188
Identity = 357/386 (92.49%), Postives = 358/386 (92.75%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGGQQHQAAGEEGGADAGEGSKAGGTAGAGAEKKAEAAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYQPPPXSAYPQQQQP-AVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXAAYYASMDPHRLGAQPSRPLLPTPPPAAAPGVASKSS 1157
            LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEG     AAGE GGADAGEGSKA      GAEKKAEAAPYQPV LP  XXXXXXXXXXXXXXXXXXXQLQGYQPP X          AVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXX  YYASMDPHRLGAQP+RPLLPTPPPAAAPGVASKSS
Sbjct:  145 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGXXXXXAAGEAGGADAGEGSKAXXXXXXGAEKKAEAAPYQPVSLPPVXXXXXXXXXXXXXXXXXXXQLQGYQPPXXXXXXXXXXXXAVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXYYASMDPHRLGAQPARPLLPTPPPAAAPGVASKSS 530          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A6H5K028_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K028_9PHAE)

HSP 1 Score: 535 bits (1379), Expect = 6.720e-184
Identity = 330/385 (85.71%), Postives = 332/385 (86.23%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGGQQHQAAGEEGGADAGEGSKAGGTAGAGAEKKAEAAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYQPPPXSAYPQQQQPAVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXAAYYASMDPHRLGAQPSRPLLPTPPPAAAPGVASKSS 1157
            LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKE                           A AEKKAE APYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGY+PPP SAYPQQQQPAVAPAGRGQYAPPPGPRLPTYN           TRGPPIPSYGPVRG   XXXXXXX       XXXXXXXXXXX  YYASMDPHRLGAQP+RPLLPTPPPAAAPGVASKSS
Sbjct:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEKKAEVAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYRPPPPSAYPQQQQPAVAPAGRGQYAPPPGPRLPTYNNNGVSAGQHHHTRGPPIPSYGPVRGGXXXXXXXXXRRGPPPGXXXXXXXXXXXXXYYASMDPHRLGAQPTRPLLPTPPPAAAPGVASKSS 387          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A7S3YHN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHN5_HETAK)

HSP 1 Score: 218 bits (555), Expect = 1.330e-61
Identity = 103/176 (58.52%), Postives = 132/176 (75.00%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGN--MADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEES---GTSGFNGP 515
            LLR+AR+ PYY+RN PHKCSFYAKGEC RG +CPFLHEMPTD  DPLA+QN RDR+YG+DDPVAAK++ R D++P L  PED  + SL++G   M   +T +DL+D FY FGEL SIR+VP +  AFV++T R AAE AA+ +Y CL +KG  L+L+WA+R +E    G +G  GP
Sbjct:  146 LLRLARNKPYYRRNLPHKCSFYAKGECTRGDRCPFLHEMPTDPNDPLANQNTRDRYYGKDDPVAAKLLKRIDEMPALRTPEDPSVKSLYVGRLPMDGSVTQDDLKDVFYQFGELESIRVVPRQSCAFVEYTLRDAAERAAQTMYNCLYVKGHRLQLSWASRRKEDALGGAAGGGGP 321          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A835YZV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV2_9STRA)

HSP 1 Score: 209 bits (532), Expect = 4.730e-57
Identity = 94/161 (58.39%), Postives = 122/161 (75.78%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSE 485
            LLRMAR+ PYY+RN  HKCSF+AKGEC RG +CPF H MPTDR+DP+AHQN+RDRFYG+DDPVA K++ +  D P+L PP D  IS+LW+G +   I  +DLRDA Y++GE+ ++R++  K  AFV++TTR AAE AA  LY+ L I G  LR++WA R E
Sbjct:  148 LLRMARNAPYYRRNMAHKCSFFAKGECTRGDRCPFQHVMPTDRSDPMAHQNVRDRFYGKDDPVANKILGKMADTPQLLPPADPAISTLWVGGLTPSIREQDLRDAMYAYGEIANVRVIAPKGMAFVEYTTRAAAETAATALYRSLSIHGVPLRVSWAVRRE 308          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A1S3HN76_LINUN (Pre-mRNA-splicing factor RBM22 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HN76_LINUN)

HSP 1 Score: 202 bits (513), Expect = 2.970e-55
Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
            LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD  DPLA QNI+DRFYG +DPVA K++ R   +PKLEPPED+ +++L++GN+ D +T +DLRD FY FGE+RS+ +V  +  AFVQFT R+++EAAAE  +  L+I GR L + W
Sbjct:  147 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGVNDPVADKLIKRYATMPKLEPPEDKSVTTLYVGNLGDKVTEKDLRDHFYQFGEIRSVTMVSRQQCAFVQFTKRESSEAAAESTFNKLIINGRRLTIKW 302          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: UPI001EE57BAF (pre-mRNA-splicing factor RBM22-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE57BAF)

HSP 1 Score: 204 bits (519), Expect = 3.610e-55
Identity = 91/156 (58.33%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
            LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD  DPLA QNI+DRFYG +DPVA K+M R  ++PKLEPPED+ I++L++GN+ D +T +DLRD FY FGE+RS+ +V  +  AFVQFT R ++E AAE+ +  L+I GR L + W
Sbjct:  148 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGMNDPVADKLMNRYSNMPKLEPPEDKTITTLYVGNLGDKVTEQDLRDHFYQFGEIRSVNVVSKQQCAFVQFTERPSSETAAERSFNKLIINGRRLNIKW 303          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A7J7K4C1_BUGNE (Pre-mRNA-splicing factor RBM22 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K4C1_BUGNE)

HSP 1 Score: 203 bits (517), Expect = 4.170e-55
Identity = 90/164 (54.88%), Postives = 123/164 (75.00%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESG 494
            LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ H+ PTD  DPLA QNI+DRFYGQ+DPVA K++ R   +PK+ PPED+ I++L++GN++D IT +D+ D FY +GELRS+ IV G   AFVQFT R AAEAAA++ +  L+I G+ + + W     + G
Sbjct:  144 LLKLARNTPYYKRNRPHICSFWVKGECKRGEECPYRHDRPTDPDDPLADQNIKDRFYGQNDPVANKLLDRYSQMPKISPPEDKSITTLYVGNVSDDITEKDISDNFYQYGELRSVNIVKGSQCAFVQFTQRSAAEAAADKAFNKLIINGKRMNIKWGKSQAQQG 307          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A5B7DKE6_PORTR (Pre-mRNA-splicing factor RBM22 n=11 Tax=Decapoda TaxID=6683 RepID=A0A5B7DKE6_PORTR)

HSP 1 Score: 204 bits (519), Expect = 4.910e-55
Identity = 94/172 (54.65%), Postives = 126/172 (73.26%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPE 518
            LLR+AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD  DPLA QNI+DR+YG +DPVA K++ R   +P+LEPPED+ I++L++GN+ D I  ++LRD FY +GELRS+ +V  + +AFVQFT+R AAE AAE+ +  L+I+GR L + W       G  G  G E
Sbjct:  113 LLRLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLLKRAAAMPRLEPPEDKSITTLYVGNLGDRIGEKELRDHFYQYGELRSVNVVAKQQYAFVQFTSRTAAELAAERTFNKLIIQGRRLNIKWGRSQARQGGLGIGGIE 284          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A8B7PMM1_HYAAZ (Pre-mRNA-splicing factor RBM22 n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PMM1_HYAAZ)

HSP 1 Score: 205 bits (521), Expect = 7.710e-55
Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPE 518
            L+R+AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD  DPLA QNI+DR+YG +DPVA K++ R + +P+L+PPED+ I++L++GN+ D I  ++LRD FY FGE+RS+ +   + FAFV FTTR AAE AAE+ Y  L+++GR L + W       G +   GPE
Sbjct:  148 LMRLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLLKRAEAMPQLDPPEDKSITTLYVGNLGDRIGEKELRDHFYQFGEIRSVIVASKQQFAFVMFTTRSAAELAAERSYNKLILQGRRLNIKWGKAQARQGNTPVEGPE 319          
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: UPI001B88D574 (pre-mRNA-splicing factor RBM22-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D574)

HSP 1 Score: 202 bits (515), Expect = 9.310e-55
Identity = 92/156 (58.97%), Postives = 121/156 (77.56%), Query Frame = 3
Query:    3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
            LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD  DPLA QNI+DRFYG +DPVA K++ R  ++PKLEPPED+ IS+L++GN+ + +  ++LRD FY FGE+RS+ +V  +  AFVQFTTR AAEAAAE  +  L+I GR L + W
Sbjct:  148 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGMNDPVADKLIKRFGNMPKLEPPEDKTISTLYIGNLGEKVGEKELRDHFYQFGEVRSVNVVSKQQCAFVQFTTRSAAEAAAEASFNKLIINGRRLNIKW 303          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXF1_ECTSI9.330e-18892.49Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5K028_9PHAE6.720e-18485.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S3YHN5_HETAK1.330e-6158.52Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A835YZV2_9STRA4.730e-5758.39Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1S3HN76_LINUN2.970e-5557.69Pre-mRNA-splicing factor RBM22 n=1 Tax=Lingula ung... [more]
UPI001EE57BAF3.610e-5558.33pre-mRNA-splicing factor RBM22-like n=2 Tax=Haliot... [more]
A0A7J7K4C1_BUGNE4.170e-5554.88Pre-mRNA-splicing factor RBM22 n=1 Tax=Bugula neri... [more]
A0A5B7DKE6_PORTR4.910e-5554.65Pre-mRNA-splicing factor RBM22 n=11 Tax=Decapoda T... [more]
A0A8B7PMM1_HYAAZ7.710e-5553.49Pre-mRNA-splicing factor RBM22 n=2 Tax=Hyalella az... [more]
UPI001B88D5749.310e-5558.97pre-mRNA-splicing factor RBM22-like n=1 Tax=Gigant... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12884contigEcto-sp13_S_contig12884:620..4073 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score550.8
Seed ortholog evalue4.9e-154
Seed eggNOG ortholog2880.D7FXF1
Model size2026
KEGG koko:K12872
KEGG Pathwayko03040,map03040
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.U6 snRNA binding
EggNOG OGsKOG0153@1,KOG0153@2759
Ec32 ortholog descriptionZinc finger, CCCH-type
Ec32 orthologEc-07_002970.1
Cds size1149
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12884.2373.1prot_Ecto-sp13_S_contig12884.2373.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12884 1486..4062 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.2196076-UTR-Ecto-sp13_S_contig12884:619..14851681462689.2196076-UTR-Ecto-sp13_S_contig12884:619..1485Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12884 620..1485 -
1681462689.2759697-UTR-Ecto-sp13_S_contig12884:4062..40731681462689.2759697-UTR-Ecto-sp13_S_contig12884:4062..4073Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12884 4063..4073 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462689.2295876-CDS-Ecto-sp13_S_contig12884:1485..22141681462689.2295876-CDS-Ecto-sp13_S_contig12884:1485..2214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12884 1486..2214 -
1681462689.2380707-CDS-Ecto-sp13_S_contig12884:2548..26771681462689.2380707-CDS-Ecto-sp13_S_contig12884:2548..2677Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12884 2549..2677 -
1681462689.2469525-CDS-Ecto-sp13_S_contig12884:3307..35001681462689.2469525-CDS-Ecto-sp13_S_contig12884:3307..3500Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12884 3308..3500 -
1681462689.2650723-CDS-Ecto-sp13_S_contig12884:3964..40621681462689.2650723-CDS-Ecto-sp13_S_contig12884:3964..4062Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12884 3965..4062 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12884.2373.1

>prot_Ecto-sp13_S_contig12884.2373.1 ID=prot_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp
MARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIR
DRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLR
DAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLR
LNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGGQQHQAAGEEGGAD
AGEGSKAGGTAGAGAEKKAEAAPYQPVPLPPVPGLPPGAPVAPVPHMPPM
PQLQGYQPPPPSAYPQQQQPAVAPAGRGQYAPPPGPRLPTYNNNGGAAGQ
HHHTRGPPIPSYGPVRGSGGGSYGGGGRRGPPPGPPPGPPPGPPPAAYYA
SMDPHRLGAQPSRPLLPTPPPAAAPGVASKSS*
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mRNA from alignment at Ecto-sp13_S_contig12884:620..4073-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12884.2373.1 ID=mRNA_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12884:620..4073- (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTTCTCCGTATGGCCCGGTCAACGCCTTACTACAAGCGCAATCAGCCG CACAAGTGCTCCTTTTACGCCAAGGGAGAGTGCAACCGAGGCGCCAAGTG CCCTTTCCTGTGAGTTCTCAGTTCCATGCCCTGTTTTGGTGTCTGCAAAA TGCAGTTGACGTTGCTGGTGGCCTCCATGGGCAACATTTTTCGGGTTTGT GCTACGTGTTCGCGTTGTTATTGTTACTGGTTTGATTTTTTTGTGTCAAC TATTTCTGCATTACCGCCGGATGTATGAGACGAAGCGATCTTCCTATAGT TTGGTGGAAATGAGGCCACGACGGTGCAGTCCGTGTTTCCGTATTCGCCC ACTGGCACATCTTCATCGCGTGATGTACGTATCTACATTGGCTGGCCGGC GCACAGTACCGTAACAATATTGCCGACTACCACCACAACAAACCGTCCTG AATACCAAGGGACACGTGGCCATCCGCATGCGTGACCGCTTTTCGATTAT CTTCCCGTCGTCGCCGCGTCTCTGGCTCGGCGCCATGAAATATGACGGCG GCTTACCGACTCGCCTATTGCAGGCACGAGATGCCGACGGACAGGGCGGA CCCCCTGGCCCACCAGAACATCCGCGACCGGTTCTACGGCCAGGACGACC CCGTCGCGGCCAAGATGATGGCCAGGCAGGACGACCTCCCGAAGCTGGAG CCCCCCGAGGACGAGGGGATCAGCAGCCTCTGGCTCGGCAACATGGCCGA CTACATCACGCCGGAGGTGATGCTGCTGCATAGGGTTGGTGTGGTGGTGA TGGCAGGGTAGCTCGAGCTGCGCTTCTTCCTTCGGGCTCTGCTGTACTGC CGGCGGGATTGGTTGTTTTACGTTGGCGATTTGGTAATGTTCTTGTGTTT TCATGGTGGTGTAGCCGAGATTGAGCGGTGTTGGGGAGGTCTCGTGGCGG TATTGGCGGTGCCTAGGGTCCTGGGTTAGGTGCGTTGCTGGAGCGTTGGC TGTGTTGGTAACTCCGGCACAAGGTCTGGGTGTTGACATATGGACTATCA CCTACGCAACTGCTGGCGTTGCGAACATTCCAATAGTCCCAACGAACTCA CATTTCGAAATAATGTTCTCCTTTGGCTGTGTTTCCGTGTTTTTCTGTCC GTATGTACGCGGTAGCCGACCTAGCGTCAACGGCATCCGCCAGATCGCCA CCACCTCTACCCTTGCGCGCGCTAGTGGTTTGTTTTCTCGCGGCACCCTT CGAAATGAACGCTCGGCAGCTGAAATGTTCCGTGTTCCGTGCCTGAACCG TTGGACATGTGCAGTATGCAACGGCATGGACCAGACACGGCGACATTGAA GACGGAATTTCTGTTTCCTCGGCCATCGCCTTTTCTCTGTCCGCAGGATC TTCGCGACGCATTCTACAGCTTCGGGGAGCTCCGGTCCATCCGCATTGTG CCGGGCAAGGACTTCGCCTTTGTGCAGTTCACCACCAGGCAGGCGGCAGA GGCGGCAGCTGAACAGCTCTACAAGGTATGTATGCAACACTCACTGCTCA GGGGTATGGTGCAAGCGCATTCCACCAAATATAGCAGTGAGCGGCGAGAG TTTAACTCGGAGGTTGCGGTGGATTTCCACATAGCAACGGACAAAAGCTA AGCTGTAGCTCACGACCAGGCGAACTGGTCTTTTTTACTGATGCAGCTCA CGTCAAGGTGTTGCAACCTGTTGACTGTGGTGTCACCAACCCCCTCACAA CCTCGTCTATTTTCTTGTCCTTTCCACGATTGAAAGCTAACCGCCTCATC CTCGCTCTTTTGTTTTCACACTCTCTCCCGCACGGCATTGCCTCACTTGC ACGCAACAGTGCCTGGTAATCAAGGGCAGGCTGCTGAGGTTGAACTGGGC CACTCGCTCAGAGGAATCGGGTACGTCGGGCTTCAACGGCCCTGAAGGCG GCGGCCGCCGCAGGATCGAAAGCGGCAGCAGTAAGGCTAAGGAGGGCGGG CAGCAGCATCAAGCTGCAGGCGAGGAGGGCGGCGCCGATGCCGGGGAGGG GTCGAAAGCAGGAGGCACGGCGGGAGCGGGGGCGGAGAAGAAGGCGGAGG CGGCACCGTACCAACCGGTCCCGCTCCCGCCAGTGCCGGGGTTGCCCCCC GGCGCCCCCGTCGCGCCCGTCCCGCACATGCCGCCCATGCCGCAGCTGCA GGGGTACCAGCCGCCGCCGCCGTCCGCCTACCCGCAGCAGCAGCAGCCCG CGGTAGCACCGGCAGGACGGGGGCAGTACGCCCCGCCCCCGGGCCCCCGA CTGCCGACGTACAACAACAACGGCGGCGCCGCCGGCCAACATCACCACAC CCGAGGCCCCCCGATCCCTTCGTACGGCCCGGTGAGGGGCAGCGGCGGGG GCAGTTACGGCGGCGGCGGGAGGCGGGGTCCCCCCCCCGGTCCTCCGCCG GGGCCGCCCCCCGGCCCTCCTCCGGCGGCGTACTACGCTTCTATGGACCC GCACCGCTTGGGTGCGCAGCCCTCAAGGCCGCTGCTGCCGACGCCGCCGC CTGCAGCCGCCCCGGGGGTCGCATCAAAAAGCAGTTAGAAAAAAAGCGAA TGATGTTCGGGTGTGAGTTGTTTACGGTGGCGGCTGGATCTGGGTTAGGT TTGGCGAGTACGGCCATCGTAACCCACCCCATGGTCAAAGATCATTTCTC CGTTGGGAGTTAGATAGGCGGGGGACATGTAAAAGAAAGGTTTTTGTGGC CGTAGTCAGCGAGTTGCTTCAGTAGCCGGGTTCTTTGATTCCAGGTGGTA CAGGGTTGTACCAACTCAAGAATCTGTTGCGGTTGTCTCAGCCGCCGTTA CCTCGACCTCTGTGATGCCTTTGTTTTGCGTACACCACCCGAAGCACCAC CACGAGTGATCAAGGGTTGAAATGTGTGCGAGCCAAATGTCAAGCTAACG CAGAGGGACACCCCGCGTTCTTTCGATCGGCAGGCACTGCTTTCGTCTGT CCGTAGGGAGTAGGATAGCCAAACACCTTGTGTAGCAGAGGGCACACAGG ACGCCTAGAATGTAACGAATCGAGGAGGTTGTGAGTGGATCGTGTCTACA CACCACACTTGACGATTTTCGCAGTGTACTGTCGTTCCGTTGCGCGCCGC GTCTTTTGGGCACGTGGGACGGCCCATCAGTCGCTACGAGCAGTACTTGA CAAATGTAGATGTTTCCCGGTGTACTGGTCCGGTGAGAACCCGGCGTGCC CCTCCCGACTTTTCAGGGATGCGAGGTCATTGGTACTTCTGTATAGCAGT ATCTCTTAACGGCGTAGCACACCCGACACAACTAAATGTCCAACTTGCGC TTGCCAAGCCGCAGTGGCAAAAATTACAAGTAGTATGGCTGGAGTTAGTT GCGTTCGGAGAGCTACCCCCCCATCCACCCCCACGCGAACATATGTATGT GCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12884:620..4073-

>mRNA_Ecto-sp13_S_contig12884.2373.1 ID=mRNA_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12884:620..4073- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCCGGTCAACGCCTTACTACAAGCGCAATCAGCCGCACAAGTGCTC
CTTTTACGCCAAGGGAGAGTGCAACCGAGGCGCCAAGTGCCCTTTCCTGC
ACGAGATGCCGACGGACAGGGCGGACCCCCTGGCCCACCAGAACATCCGC
GACCGGTTCTACGGCCAGGACGACCCCGTCGCGGCCAAGATGATGGCCAG
GCAGGACGACCTCCCGAAGCTGGAGCCCCCCGAGGACGAGGGGATCAGCA
GCCTCTGGCTCGGCAACATGGCCGACTACATCACGCCGGAGGATCTTCGC
GACGCATTCTACAGCTTCGGGGAGCTCCGGTCCATCCGCATTGTGCCGGG
CAAGGACTTCGCCTTTGTGCAGTTCACCACCAGGCAGGCGGCAGAGGCGG
CAGCTGAACAGCTCTACAAGTGCCTGGTAATCAAGGGCAGGCTGCTGAGG
TTGAACTGGGCCACTCGCTCAGAGGAATCGGGTACGTCGGGCTTCAACGG
CCCTGAAGGCGGCGGCCGCCGCAGGATCGAAAGCGGCAGCAGTAAGGCTA
AGGAGGGCGGGCAGCAGCATCAAGCTGCAGGCGAGGAGGGCGGCGCCGAT
GCCGGGGAGGGGTCGAAAGCAGGAGGCACGGCGGGAGCGGGGGCGGAGAA
GAAGGCGGAGGCGGCACCGTACCAACCGGTCCCGCTCCCGCCAGTGCCGG
GGTTGCCCCCCGGCGCCCCCGTCGCGCCCGTCCCGCACATGCCGCCCATG
CCGCAGCTGCAGGGGTACCAGCCGCCGCCGCCGTCCGCCTACCCGCAGCA
GCAGCAGCCCGCGGTAGCACCGGCAGGACGGGGGCAGTACGCCCCGCCCC
CGGGCCCCCGACTGCCGACGTACAACAACAACGGCGGCGCCGCCGGCCAA
CATCACCACACCCGAGGCCCCCCGATCCCTTCGTACGGCCCGGTGAGGGG
CAGCGGCGGGGGCAGTTACGGCGGCGGCGGGAGGCGGGGTCCCCCCCCCG
GTCCTCCGCCGGGGCCGCCCCCCGGCCCTCCTCCGGCGGCGTACTACGCT
TCTATGGACCCGCACCGCTTGGGTGCGCAGCCCTCAAGGCCGCTGCTGCC
GACGCCGCCGCCTGCAGCCGCCCCGGGGGTCGCATCAAAAAGCAGTTAG
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