mRNA_Ecto-sp13_S_contig12884.2373.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: D7FXF1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXF1_ECTSI) HSP 1 Score: 551 bits (1419), Expect = 9.330e-188 Identity = 357/386 (92.49%), Postives = 358/386 (92.75%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGGQQHQAAGEEGGADAGEGSKAGGTAGAGAEKKAEAAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYQPPPXSAYPQQQQP-AVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXAAYYASMDPHRLGAQPSRPLLPTPPPAAAPGVASKSS 1157
LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEG AAGE GGADAGEGSKA GAEKKAEAAPYQPV LP XXXXXXXXXXXXXXXXXXXQLQGYQPP X AVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXX YYASMDPHRLGAQP+RPLLPTPPPAAAPGVASKSS
Sbjct: 145 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGXXXXXAAGEAGGADAGEGSKAXXXXXXGAEKKAEAAPYQPVSLPPVXXXXXXXXXXXXXXXXXXXQLQGYQPPXXXXXXXXXXXXAVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXXXYYASMDPHRLGAQPARPLLPTPPPAAAPGVASKSS 530
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A6H5K028_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K028_9PHAE) HSP 1 Score: 535 bits (1379), Expect = 6.720e-184 Identity = 330/385 (85.71%), Postives = 332/385 (86.23%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEGGQQHQAAGEEGGADAGEGSKAGGTAGAGAEKKAEAAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYQPPPXSAYPQQQQPAVAPAGRGQYAPPPGPRLPTYNXXXXXXXXXXXTRGPPIPSYGPVRGSGGXXXXXXXXXXXXXXXXXXXXXXXXXAAYYASMDPHRLGAQPSRPLLPTPPPAAAPGVASKSS 1157
LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKE A AEKKAE APYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGY+PPP SAYPQQQQPAVAPAGRGQYAPPPGPRLPTYN TRGPPIPSYGPVRG XXXXXXX XXXXXXXXXXX YYASMDPHRLGAQP+RPLLPTPPPAAAPGVASKSS
Sbjct: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPEGGGRRRIESGSSKAKEXXXXXXXXXXXXXXXXXXXXXXXXXXXAEAEKKAEVAPYQPVPLPXXXXXXXXXXXXXXXXXXXXXQLQGYRPPPPSAYPQQQQPAVAPAGRGQYAPPPGPRLPTYNNNGVSAGQHHHTRGPPIPSYGPVRGGXXXXXXXXXRRGPPPGXXXXXXXXXXXXXYYASMDPHRLGAQPTRPLLPTPPPAAAPGVASKSS 387
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A7S3YHN5_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YHN5_HETAK) HSP 1 Score: 218 bits (555), Expect = 1.330e-61 Identity = 103/176 (58.52%), Postives = 132/176 (75.00%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGN--MADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEES---GTSGFNGP 515
LLR+AR+ PYY+RN PHKCSFYAKGEC RG +CPFLHEMPTD DPLA+QN RDR+YG+DDPVAAK++ R D++P L PED + SL++G M +T +DL+D FY FGEL SIR+VP + AFV++T R AAE AA+ +Y CL +KG L+L+WA+R +E G +G GP
Sbjct: 146 LLRLARNKPYYRRNLPHKCSFYAKGECTRGDRCPFLHEMPTDPNDPLANQNTRDRYYGKDDPVAAKLLKRIDEMPALRTPEDPSVKSLYVGRLPMDGSVTQDDLKDVFYQFGELESIRVVPRQSCAFVEYTLRDAAERAAQTMYNCLYVKGHRLQLSWASRRKEDALGGAAGGGGP 321
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A835YZV2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZV2_9STRA) HSP 1 Score: 209 bits (532), Expect = 4.730e-57 Identity = 94/161 (58.39%), Postives = 122/161 (75.78%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSE 485
LLRMAR+ PYY+RN HKCSF+AKGEC RG +CPF H MPTDR+DP+AHQN+RDRFYG+DDPVA K++ + D P+L PP D IS+LW+G + I +DLRDA Y++GE+ ++R++ K AFV++TTR AAE AA LY+ L I G LR++WA R E
Sbjct: 148 LLRMARNAPYYRRNMAHKCSFFAKGECTRGDRCPFQHVMPTDRSDPMAHQNVRDRFYGKDDPVANKILGKMADTPQLLPPADPAISTLWVGGLTPSIREQDLRDAMYAYGEIANVRVIAPKGMAFVEYTTRAAAETAATALYRSLSIHGVPLRVSWAVRRE 308
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A1S3HN76_LINUN (Pre-mRNA-splicing factor RBM22 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A1S3HN76_LINUN) HSP 1 Score: 202 bits (513), Expect = 2.970e-55 Identity = 90/156 (57.69%), Postives = 121/156 (77.56%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD DPLA QNI+DRFYG +DPVA K++ R +PKLEPPED+ +++L++GN+ D +T +DLRD FY FGE+RS+ +V + AFVQFT R+++EAAAE + L+I GR L + W
Sbjct: 147 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGVNDPVADKLIKRYATMPKLEPPEDKSVTTLYVGNLGDKVTEKDLRDHFYQFGEIRSVTMVSRQQCAFVQFTKRESSEAAAESTFNKLIINGRRLTIKW 302
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: UPI001EE57BAF (pre-mRNA-splicing factor RBM22-like n=2 Tax=Haliotis TaxID=6452 RepID=UPI001EE57BAF) HSP 1 Score: 204 bits (519), Expect = 3.610e-55 Identity = 91/156 (58.33%), Postives = 121/156 (77.56%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD DPLA QNI+DRFYG +DPVA K+M R ++PKLEPPED+ I++L++GN+ D +T +DLRD FY FGE+RS+ +V + AFVQFT R ++E AAE+ + L+I GR L + W
Sbjct: 148 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGMNDPVADKLMNRYSNMPKLEPPEDKTITTLYVGNLGDKVTEQDLRDHFYQFGEIRSVNVVSKQQCAFVQFTERPSSETAAERSFNKLIINGRRLNIKW 303
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A7J7K4C1_BUGNE (Pre-mRNA-splicing factor RBM22 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7K4C1_BUGNE) HSP 1 Score: 203 bits (517), Expect = 4.170e-55 Identity = 90/164 (54.88%), Postives = 123/164 (75.00%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESG 494
LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ H+ PTD DPLA QNI+DRFYGQ+DPVA K++ R +PK+ PPED+ I++L++GN++D IT +D+ D FY +GELRS+ IV G AFVQFT R AAEAAA++ + L+I G+ + + W + G
Sbjct: 144 LLKLARNTPYYKRNRPHICSFWVKGECKRGEECPYRHDRPTDPDDPLADQNIKDRFYGQNDPVANKLLDRYSQMPKISPPEDKSITTLYVGNVSDDITEKDISDNFYQYGELRSVNIVKGSQCAFVQFTQRSAAEAAADKAFNKLIINGKRMNIKWGKSQAQQG 307
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A5B7DKE6_PORTR (Pre-mRNA-splicing factor RBM22 n=11 Tax=Decapoda TaxID=6683 RepID=A0A5B7DKE6_PORTR) HSP 1 Score: 204 bits (519), Expect = 4.910e-55 Identity = 94/172 (54.65%), Postives = 126/172 (73.26%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPE 518
LLR+AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD DPLA QNI+DR+YG +DPVA K++ R +P+LEPPED+ I++L++GN+ D I ++LRD FY +GELRS+ +V + +AFVQFT+R AAE AAE+ + L+I+GR L + W G G G E
Sbjct: 113 LLRLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLLKRAAAMPRLEPPEDKSITTLYVGNLGDRIGEKELRDHFYQYGELRSVNVVAKQQYAFVQFTSRTAAELAAERTFNKLIIQGRRLNIKWGRSQARQGGLGIGGIE 284
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: A0A8B7PMM1_HYAAZ (Pre-mRNA-splicing factor RBM22 n=2 Tax=Hyalella azteca TaxID=294128 RepID=A0A8B7PMM1_HYAAZ) HSP 1 Score: 205 bits (521), Expect = 7.710e-55 Identity = 92/172 (53.49%), Postives = 126/172 (73.26%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNWATRSEESGTSGFNGPE 518
L+R+AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD DPLA QNI+DR+YG +DPVA K++ R + +P+L+PPED+ I++L++GN+ D I ++LRD FY FGE+RS+ + + FAFV FTTR AAE AAE+ Y L+++GR L + W G + GPE
Sbjct: 148 LMRLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRYYGVNDPVADKLLKRAEAMPQLDPPEDKSITTLYVGNLGDRIGEKELRDHFYQFGEIRSVIVASKQQFAFVMFTTRSAAELAAERSYNKLILQGRRLNIKWGKAQARQGNTPVEGPE 319
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Match: UPI001B88D574 (pre-mRNA-splicing factor RBM22-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88D574) HSP 1 Score: 202 bits (515), Expect = 9.310e-55 Identity = 92/156 (58.97%), Postives = 121/156 (77.56%), Query Frame = 3
Query: 3 LLRMARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRDRFYGQDDPVAAKMMARQDDLPKLEPPEDEGISSLWLGNMADYITPEDLRDAFYSFGELRSIRIVPGKDFAFVQFTTRQAAEAAAEQLYKCLVIKGRLLRLNW 470
LL++AR+TPYYKRN+PH CSF+ KGEC RG +CP+ HE PTD DPLA QNI+DRFYG +DPVA K++ R ++PKLEPPED+ IS+L++GN+ + + ++LRD FY FGE+RS+ +V + AFVQFTTR AAEAAAE + L+I GR L + W
Sbjct: 148 LLKLARTTPYYKRNRPHICSFWVKGECKRGEECPYRHEKPTDPDDPLADQNIKDRFYGMNDPVADKLIKRFGNMPKLEPPEDKTISTLYIGNLGEKVGEKELRDHFYQFGEVRSVNVVSKQQCAFVQFTTRSAAEAAAEASFNKLIINGRRLNIKW 303 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12884.2373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12884.2373.1 >prot_Ecto-sp13_S_contig12884.2373.1 ID=prot_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=383bp MARSTPYYKRNQPHKCSFYAKGECNRGAKCPFLHEMPTDRADPLAHQNIRback to top mRNA from alignment at Ecto-sp13_S_contig12884:620..4073- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12884.2373.1 ID=mRNA_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12884:620..4073- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12884:620..4073- >mRNA_Ecto-sp13_S_contig12884.2373.1 ID=mRNA_Ecto-sp13_S_contig12884.2373.1|Name=mRNA_Ecto-sp13_S_contig12884.2373.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12884:620..4073- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |