mRNA_Ecto-sp13_S_contig12866.2362.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12866.2362.1
Unique NamemRNA_Ecto-sp13_S_contig12866.2362.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: D8LG48_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LG48_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 8.810e-92
Identity = 143/150 (95.33%), Postives = 144/150 (96.00%), Query Frame = 1 
Query:    1 TDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQEDRGAYSSSAYAYDGATFGTGGMGXXXXXXXXXXXXXDDDGVPQQADL 450
            TDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISE VTLAALILWKED+FFVDGGYDNFDAQEDRGAYSSSAYAYDGATFGTGGMG   XXXXXXXX  DDDGVPQQADL
Sbjct:   74 TDGGMDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISEAVTLAALILWKEDMFFVDGGYDNFDAQEDRGAYSSSAYAYDGATFGTGGMGGGLXXXXXXXXNGDDDGVPQQADL 223
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A7S1TNM9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TNM9_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 1.800e-17
Identity = 45/110 (40.91%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQED-----RGAYSSSAYA-YDGATF 360
            G +IG++TMM FL LMTAV+WGQ+SGCED  DD D YSC N     A    +  L + +      L+LW++D      GYD+            GA  ++AYA YD +T+
Sbjct:   72 GFVIGVSTMMSFLMLMTAVFWGQLSGCEDVKDDPDQYSCDNKKAYGATCAMSVLLFLLDVSFTILLVLWRDDFMSESSGYDDIGGNSAFVNNAPGAADANAYAAYDSSTY 181
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A7R9YCB5_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9YCB5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 5.110e-16
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQ----EDRGAYSSSAYAYDGATF 360
            G +IG+ TMM  L  MTA++WGQ+SGCE   +DVD Y+C N     A   F+  L + +T     L+LW++D       Y++  +     +  GA  +S  AYD +T+
Sbjct:   26 GFVIGVATMMSLLMFMTAIFWGQLSGCEKVDEDVDQYTCDNKKAYGATCAFSVLLFLLDTAFTILLVLWRDDFMGETAAYEDIGSSPFVNDQPGAEGNSYAAYDSSTY 133
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A7R9U994_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U994_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 2.450e-15
Identity = 39/108 (36.11%), Postives = 59/108 (54.63%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQ----EDRGAYSSSAYAYDGATF 360
            G +IG+ TMM  L  MTA++WGQ+SGCE   +DVD Y+C N     A   F+  L + +T     L+LW++D       Y++  +     +  GA  +S  AYD +T+
Sbjct:   99 GFVIGVATMMSLLMFMTAIFWGQLSGCEKVDEDVDQYTCDNKKAYGATCAFSVLLFLLDTAFTILLVLWRDDFMGETAAYEDIGSSPFVNDQPGAEGNSYAAYDSSTY 206
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: W7TS32_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TS32_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 7.900e-15
Identity = 41/110 (37.27%), Postives = 61/110 (55.45%), Query Frame = 1 
Query:   37 PIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQEDRGAYSSSAYAYDGATFGT 366
            P+  G ++G++ M+ FLSLMTA++WGQ++ C     D+  YSC N    +A   FA+ L + + V  +AL+LW+++       YD  D     GA SSSA    G   GT
Sbjct:   68 PLAVGFVLGVSVMITFLSLMTAIFWGQLANCSPGYYDIKRYSCTNRSAYSATCAFATLLFLVQLVFTSALVLWRDEFIQDSSAYD--DIHGAGGASSSSAAGLPGYEGGT 175
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: D7FPE0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE0_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.180e-10
Identity = 36/90 (40.00%), Postives = 53/90 (58.89%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTD-DVDGYSCYNSFGMAAVAWFASFLLISETVTLAALI-----LWKEDIFFVDGGYDNFD 300
            G LIG+T ++  ++LMTA+YWGQ++GC+ D D D D YSC N   M  VA FAS + + +   +  L+     L +ED     G Y ++D
Sbjct:   89 GFLIGVTLVLNVITLMTAIYWGQLAGCDSDYDGDYDQYSCSNKSAMRGVAAFASIIWVLQLPFIYLLVQRRGVLTREDYATSGGRYADYD 178
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A7S2S6Q8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S6Q8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.960e-7
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKED 264
            G L+G++    +LSL TA++WGQ++ C+     +  YSC N     AV  FA+ L I +    A L +WK+D
Sbjct:   83 GFLLGLSGATAWLSLQTAIFWGQLADCDRHAHHLSQYSCSNVSAYKAVCAFAALLFILQGGLFAVLAVWKDD 154
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A7S2KR05_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KR05_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 1.690e-5
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:   37 PIVGGGLIGITTMMCFLSLMTAVYWGQMSGCED--DTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALIL 252
            PI  G  IG +  M  L L+TAVYWG+MSGCE   +   +D Y C +   M   A  A+ L ++E V    L++
Sbjct:  108 PIAYGIWIGTSLTMTVLYLITAVYWGEMSGCEKLPEGTTIDQYECDDKNAMECAAGIATLLFLTEIVLTGVLVV 181
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BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Match: A0A482SCT2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SCT2_9ARCH)

HSP 1 Score: 51.6 bits (122), Expect = 4.480e-5
Identity = 23/73 (31.51%), Postives = 42/73 (57.53%), Query Frame = 1 
Query:   49 GGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYSCYNSFGMAAVAWFASFLLISETVTLAALILWKEDI 267
            G ++G + M+ F++L +A++WGQ S C  ++       CYN   M +   F+ FL ++    +AA+I +K D+
Sbjct:   77 GIVLGCSVMLIFMTLQSAIFWGQYSDCTPNSLLNSVTQCYNPAAMKSCCTFSVFLFLTYIAQVAAMIRYKNDV 149
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12866.2362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D8LG48_ECTSI8.810e-9295.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S1TNM9_9STRA1.800e-1740.91Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7R9YCB5_9STRA5.110e-1636.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7R9U994_9STRA2.450e-1536.11Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
W7TS32_9STRA7.900e-1537.27Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
D7FPE0_ECTSI1.180e-1040.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2S6Q8_9STRA1.960e-737.50Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2KR05_9STRA1.690e-539.19Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A482SCT2_9ARCH4.480e-531.51Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12866contigEcto-sp13_S_contig12866:2942..4777 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size453
Hectar predicted targeting categorysignal anchor
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_001960.1
Cds size441
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.4570663-CDS-Ecto-sp13_S_contig12866:2941..31101681462688.4570663-CDS-Ecto-sp13_S_contig12866:2941..3110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12866 2942..3110 -
1681462688.466111-CDS-Ecto-sp13_S_contig12866:3349..35081681462688.466111-CDS-Ecto-sp13_S_contig12866:3349..3508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12866 3350..3508 -
1681462688.4752789-CDS-Ecto-sp13_S_contig12866:4652..47651681462688.4752789-CDS-Ecto-sp13_S_contig12866:4652..4765Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12866 4653..4765 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462688.4872453-UTR-Ecto-sp13_S_contig12866:4765..47771681462688.4872453-UTR-Ecto-sp13_S_contig12866:4765..4777Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12866 4766..4777 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12866.2362.1prot_Ecto-sp13_S_contig12866.2362.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12866 2942..4765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12866.2362.1

>prot_Ecto-sp13_S_contig12866.2362.1 ID=prot_Ecto-sp13_S_contig12866.2362.1|Name=mRNA_Ecto-sp13_S_contig12866.2362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=147bp
MDTAMAIEPIVGGGLIGITTMMCFLSLMTAVYWGQMSGCEDDTDDVDGYS
CYNSFGMAAVAWFASFLLISETVTLAALILWKEDIFFVDGGYDNFDAQED
RGAYSSSAYAYDGATFGTGGMGGGLGGGGGVGGDGDDDGVPQQADL*
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mRNA from alignment at Ecto-sp13_S_contig12866:2942..4777-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12866.2362.1 ID=mRNA_Ecto-sp13_S_contig12866.2362.1|Name=mRNA_Ecto-sp13_S_contig12866.2362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1836bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12866:2942..4777- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGGACGGGGGGATGGACACTGCGATGGCGATCGAGCCCATCGTGGGAGG
CGGTTTGATCGGCATCACGACCATGATGTGCTTCCTTTCTCTCATGACCG
CGGTATATTGGGGGCAAATGTCGGGGTGAGAGCCGATACTGGGGCGTTTT
GCCGCGAGTTGGGAATGTCACCAGACACCACTTGTACTATTGCTTTTGTT
TTTGCTTTTGCTGCTGCTGTTGTTACTATTGCTGCTGCTGCTGCTGCTGC
ATCTATAATCATTTCTACATTTTCGGCAGCGTTCCGCCCAGGTGTTGTCG
TTGTTGCGGAGGGATTACCGGTACTGACGTAGTGGCTACCCCTTTGATGA
GCTAAAGCCAGGCTGTTTTTTCATACGTGAGAGCGAGCAAGGTTGCACAC
TGTTGTTGCGATCGTGGTCATGGTGTGGTCGTTGTCGGAAACCGGACACG
GCGATGGTGTCACATCGCCATTGTCGATGGTGCTCTCGGCAGACCCCATG
CCGCAAAGCGGGTGCTTGCTCTATCCTCAACTGTGTGTGCGCACGCACAA
GCAAGAAAGCACACACCAATTGGAACCACGGGACTTGCTGTCTGAAACTT
GGAGGTCGTGGATACCCCATGTCTACGCGAAGATGTGGAGGATGCAGCCA
GAACCATCGAGCGGCGGCGGTATTTATGAGTTGCCGGGGCGGGAGTCATC
GTGTGCGTTAGTTCCAAAGCGGAGAGAGGATGGGCGATGATCCCGCTTGC
TGGTTCATCTCCGTCGGGCGGTCTGGTGTCCGGAATCCCCGTACTCTTTT
TTTGGATACGTGTTGTTTCTGTGGCCCTGCCCTCCGCCAAGTACCTCATT
TGTGGCATGCGCTTGATTTTTCTTTCTACACTCTTCGGGACGATATGTGG
CCCCTGTCCGATCTGGATGCCTGAAAACCCAACTCGGAAGGAGCACGACG
AGGCCCCCCAAATGCTGCATATGGTGTCGATGCCTGTATAATGGAGCCGA
AGTGGTGGGTGCGCCGTCTAGTGCAGGCCGCACGGCCCGTCTGATCTGTG
ACCACACGCAAGCAACAAGGGACCGCACAGGAGGGACGCATACCAATGGT
TGAAGGGACGACATTGACACACCCCTGCCAATGTTCAAGGGGGGTACTTT
GATGAACCTCTACATATCAATGATCAAAGGACTAAAAACATTGACACAAG
CCCATGTACTAATGTTCACACAACCCCCCCTCCCCTACGCGCCCCCCGGC
TACCTTTGGCGATGGACAGGTGCGAGGATGATACGGACGACGTGGACGGG
TACTCGTGCTACAACTCCTTCGGGATGGCGGCCGTGGCGTGGTTCGCCTC
TTTTCTACTCATCTCGGAGACCGTAACCCTGGCCGCGTTGATCTTGTGGA
AGGAAGACATCTTCTTCGTAGACGGCGGGTGAGTGTTGTGTTTTCTTGTC
AGGGCGACAGACGAAATAAATTCTGTGCCCCGCGGCTTTTCAAGTCAAAG
TAAGACGCACGTACACGTGTACCATACGGGTTGGGTGGTAACAACTACCT
GTATCTTTCTTCCATGGAAGTGCTGCCAGTAGAACGCACCACCGATGGCG
CTGCGCGTTTTGTCCCCCGTTCCTTTCGGGTGGTGGGAACTTTTCGTGCA
CCATGCACCATCATCAGGTACGACAACTTCGACGCACAAGAGGACCGCGG
GGCGTACAGCTCTTCGGCCTACGCGTACGACGGGGCTACCTTCGGCACCG
GGGGGATGGGAGGGGGCCTCGGGGGCGGCGGCGGGGTGGGTGGCGACGGG
GACGATGACGGCGTACCACAACAGGCGGATCTGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12866:2942..4777-

>mRNA_Ecto-sp13_S_contig12866.2362.1 ID=mRNA_Ecto-sp13_S_contig12866.2362.1|Name=mRNA_Ecto-sp13_S_contig12866.2362.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=441bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12866:2942..4777- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACACTGCGATGGCGATCGAGCCCATCGTGGGAGGCGGTTTGATCGG
CATCACGACCATGATGTGCTTCCTTTCTCTCATGACCGCGGTATATTGGG
GGCAAATGTCGGGGTGCGAGGATGATACGGACGACGTGGACGGGTACTCG
TGCTACAACTCCTTCGGGATGGCGGCCGTGGCGTGGTTCGCCTCTTTTCT
ACTCATCTCGGAGACCGTAACCCTGGCCGCGTTGATCTTGTGGAAGGAAG
ACATCTTCTTCGTAGACGGCGGGTACGACAACTTCGACGCACAAGAGGAC
CGCGGGGCGTACAGCTCTTCGGCCTACGCGTACGACGGGGCTACCTTCGG
CACCGGGGGGATGGGAGGGGGCCTCGGGGGCGGCGGCGGGGTGGGTGGCG
ACGGGGACGATGACGGCGTACCACAACAGGCGGATCTGTAG
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