mRNA_Ecto-sp13_S_contig12854.2355.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12854.2355.1
Unique NamemRNA_Ecto-sp13_S_contig12854.2355.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12854.2355.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 162 bits (411), Expect = 1.300e-44
Identity = 82/89 (92.13%), Postives = 86/89 (96.63%), Query Frame = 1 
Query:    1 EAFGRRSDAWGNALGSSSNGNNGSLEAGVAASLGVRARDVVGNAVGEGGDELAVYAFHREIEAFAKGSVDDLGNGTYDVWITPTVAGPY 267
            EAFGRRSDAWG+ALGSSSN NNGSLEAGV ASLGVRARDVVGNAVGEGGDELAVYAFHRE+EAF KG+VDDLGNG+YDVWITPTVAGPY
Sbjct:  874 EAFGRRSDAWGDALGSSSNANNGSLEAGVTASLGVRARDVVGNAVGEGGDELAVYAFHREVEAFTKGTVDDLGNGSYDVWITPTVAGPY 962
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BLAST of mRNA_Ecto-sp13_S_contig12854.2355.1 vs. uniprot
Match: A0A059LMA3_9CHLO (Uncharacterized protein (Fragment) n=1 Tax=Helicosporidium sp. ATCC 50920 TaxID=1291522 RepID=A0A059LMA3_9CHLO)

HSP 1 Score: 53.9 bits (128), Expect = 2.150e-6
Identity = 29/63 (46.03%), Postives = 38/63 (60.32%), Query Frame = 1 
Query:   79 AGVAASLGVRARDVVGNAVGEGGDELAVYAFHREIEAFAKGSVDDLGNGTYDVWITPTVAGPY 267
            AG  A+  + ARD  GN    GGDE  V A   ++ A A G+V+D G+G+Y V +TP VAG Y
Sbjct:  404 AGAEAAFAIEARDEAGNRRLSGGDEFKVLALGSDVSAAATGAVEDRGDGSYRVTLTPQVAGLY 466
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12854.2355.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LIF9_ECTSI1.300e-4492.13Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A059LMA3_9CHLO2.150e-646.03Uncharacterized protein (Fragment) n=1 Tax=Helicos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12854contigEcto-sp13_S_contig12854:3614..4471 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score163.7
Seed ortholog evalue4e-38
Seed eggNOG ortholog2880.D8LIF9
Model size270
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
Ec32 ortholog descriptionPA14
Ec32 orthologEc-18_003830.1
Cds size267
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.9468365-CDS-Ecto-sp13_S_contig12854:3615..36961681462687.9468365-CDS-Ecto-sp13_S_contig12854:3615..3696Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12854 3616..3696 -
1681462687.9590607-CDS-Ecto-sp13_S_contig12854:4285..44711681462687.9590607-CDS-Ecto-sp13_S_contig12854:4285..4471Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12854 4286..4471 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12854.2355.1prot_Ecto-sp13_S_contig12854.2355.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12854 3616..4471 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12854.2355.1

>prot_Ecto-sp13_S_contig12854.2355.1 ID=prot_Ecto-sp13_S_contig12854.2355.1|Name=mRNA_Ecto-sp13_S_contig12854.2355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=89bp
EAFGRRSDAWGNALGSSSNGNNGSLEAGVAASLGVRARDVVGNAVGEGGD
ELAVYAFHREIEAFAKGSVDDLGNGTYDVWITPTVAGPY
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mRNA from alignment at Ecto-sp13_S_contig12854:3614..4471-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12854.2355.1 ID=mRNA_Ecto-sp13_S_contig12854.2355.1|Name=mRNA_Ecto-sp13_S_contig12854.2355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=858bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12854:3614..4471- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGCCTTCGGCCGACGCAGCGACGCATGGGGGAACGCCCTGGGGAGCAG
CAGCAATGGCAACAATGGGTCCCTCGAGGCGGGTGTGGCGGCCTCGTTGG
GTGTCCGGGCGAGGGATGTCGTCGGGAACGCGGTGGGGGAGGGCGGCGAC
GAGCTGGCGGTGTATGCTTTCCACCGCGAAATCGAGGTGCGGGTTCGTCT
TTGACGGGCCGATGGTCATCCTGTAGCTTCATCTTTAGGACGTTGTGGAT
GGAGGGGGTTTCGGTCGATGGTTGATGGTCATTTATCAATCGAGAGCAAG
ATGGCGGTGGGTTACGTGGGAGACGGGTTGCGTTCATTTTGCCCATGGCA
GCAATGTTCTTGGCCCGCCGCTGGGTGTTGGGTTCTAGCCAACCGAAACA
TGTATTCCATCGCAGCGTTTGCCATGCCTCCCTCCGAAATGTCTGACCTC
TCTCGATGTGGAAACGGTTAGTTGGTTTTACCAGAAGAGATCTTCAAAGG
CAATTCACTTCGAATCTCCCCCAAAACTTAGTCGAAGGCCTTAGTGGAGT
TAGGATGACATGACGAAGTGGTCTTCTTGTCCCTTGTTCTCGATCGGCCC
GCGCTCAGCGTTCTAGACGCGAAGTGTACACGCCGGTGCCCCCACTCAAC
TGTTCTATGCCTCAACTGACAAGAGAGCGTCCGCTTCATCAGCGGCATCG
TGTTCATCATCCTACGTGACCCCAGCAAGTTGTCTCTTCCTGCGCCCCTC
GACCCGGCAACTTGTCTGCGAATAGGCATTCGCGAAGGGAAGCGTTGATG
ACCTTGGAAACGGTACCTACGATGTGTGGATTACGCCCACCGTGGCCGGG
CCTTACTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12854:3614..4471-

>mRNA_Ecto-sp13_S_contig12854.2355.1 ID=mRNA_Ecto-sp13_S_contig12854.2355.1|Name=mRNA_Ecto-sp13_S_contig12854.2355.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=267bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12854:3614..4471- (Ectocarpus species13 EcNAP12_S_4_19m)
GAAGCCTTCGGCCGACGCAGCGACGCATGGGGGAACGCCCTGGGGAGCAG
CAGCAATGGCAACAATGGGTCCCTCGAGGCGGGTGTGGCGGCCTCGTTGG
GTGTCCGGGCGAGGGATGTCGTCGGGAACGCGGTGGGGGAGGGCGGCGAC
GAGCTGGCGGTGTATGCTTTCCACCGCGAAATCGAGGCATTCGCGAAGGG
AAGCGTTGATGACCTTGGAAACGGTACCTACGATGTGTGGATTACGCCCA
CCGTGGCCGGGCCTTAC
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