mRNA_Ecto-sp13_S_contig12854.2354.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12854.2354.1
Unique NamemRNA_Ecto-sp13_S_contig12854.2354.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12854.2354.1 vs. uniprot
Match: D8LIF9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIF9_ECTSI)

HSP 1 Score: 185 bits (470), Expect = 2.960e-52
Identity = 98/106 (92.45%), Postives = 102/106 (96.23%), Query Frame = 1 
Query:    1 NTWSSYSGEDGEEPSATFFGNGSGIALVTYVPREAGTSFLYVHVNDLQVAGSPFEVDVSAGPARGANATASGSALALATAGNNSSFIIQARDGGANPAAEESEMKA 318
            NTWSSYSGEDGE+P  TFFGNGSGIALVTYVPREAGTSFLYVHVNDLQVAGSPFEV+VSAGPARGANATASGSALALATAG N+SFIIQARDGGANPAAEESE+ A
Sbjct: 1061 NTWSSYSGEDGEKPLVTFFGNGSGIALVTYVPREAGTSFLYVHVNDLQVAGSPFEVNVSAGPARGANATASGSALALATAGKNASFIIQARDGGANPAAEESEIHA 1166
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BLAST of mRNA_Ecto-sp13_S_contig12854.2354.1 vs. uniprot
Match: G4YY21_PHYSP (Uncharacterized protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4YY21_PHYSP)

HSP 1 Score: 57.4 bits (137), Expect = 2.550e-7
Identity = 32/70 (45.71%), Postives = 42/70 (60.00%), Query Frame = 1 
Query:   88 YVPREAGTSFLYVHVNDLQVAGSPFEVDVSAGPARGANATASGSALALATAGNNSSFIIQARDGGANPAA 297
            Y PR  G + L+V ++ L + GSPF V+V+AGPA G+   ASG AL  A AG  ++F I   D   NP A
Sbjct: 1032 YTPRYVGVTRLHVTLSQLAIVGSPFLVNVTAGPALGSRCVASGDALVSAVAGQRTNFTISIYDAFGNPKA 1101
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BLAST of mRNA_Ecto-sp13_S_contig12854.2354.1 vs. uniprot
Match: A0A6A3MYL0_9STRA (PA14 domain-containing protein n=13 Tax=Phytophthora TaxID=4783 RepID=A0A6A3MYL0_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 1.440e-5
Identity = 29/64 (45.31%), Postives = 38/64 (59.38%), Query Frame = 1 
Query:   85 TYVPREAGTSFLYVHVNDLQVAGSPFEVDVSAGPARGANATASGSALALATAGNNSSFIIQARD 276
            TY P   G + L+V ++   + GSPF VDV+AGPA G+   ASG AL  A AG  ++F I   D
Sbjct:  722 TYTPHFVGGTRLHVALSQQAILGSPFLVDVTAGPALGSRCVASGDALVSAVAGQRTNFTISIYD 785
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BLAST of mRNA_Ecto-sp13_S_contig12854.2354.1 vs. uniprot
Match: A0A225WFM4_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WFM4_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 5.070e-5
Identity = 27/60 (45.00%), Postives = 37/60 (61.67%), Query Frame = 1 
Query:   85 TYVPREAGTSFLYVHVNDLQVAGSPFEVDVSAGPARGANATASGSALALATAGNNSSFII 264
            TY P   G + L+V ++   + GSPF VDV+AGPA G+   ASG AL  A AG  ++F +
Sbjct: 1022 TYSPHYVGLTRLHVALSQQAIIGSPFLVDVTAGPALGSRCIASGDALVSAVAGQRTNFTV 1081
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12854.2354.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LIF9_ECTSI2.960e-5292.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G4YY21_PHYSP2.550e-745.71Uncharacterized protein n=1 Tax=Phytophthora sojae... [more]
A0A6A3MYL0_9STRA1.440e-545.31PA14 domain-containing protein n=13 Tax=Phytophtho... [more]
A0A225WFM4_9STRA5.070e-545.00Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12854contigEcto-sp13_S_contig12854:1114..2408 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score187.6
Seed ortholog evalue3e-45
Seed eggNOG ortholog2880.D8LIF9
Model size319
KEGG koko:K04437,ko:K06572
KEGG Pathwayko04010,ko04360,ko04510,ko05132,ko05205,map04010,map04360,map04510,map05132,map05205
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.regulation of membrane repolarization during atrial cardiac muscle cell action potential
EggNOG OGsCOG5069@1,KOG0518@2759
Cds size318
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090,ko04147,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.9043233-CDS-Ecto-sp13_S_contig12854:1114..13081681462687.9043233-CDS-Ecto-sp13_S_contig12854:1114..1308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12854 1115..1308 -
1681462687.9164143-CDS-Ecto-sp13_S_contig12854:2284..24081681462687.9164143-CDS-Ecto-sp13_S_contig12854:2284..2408Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12854 2285..2408 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12854.2354.1prot_Ecto-sp13_S_contig12854.2354.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12854 1115..2408 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12854.2354.1

>prot_Ecto-sp13_S_contig12854.2354.1 ID=prot_Ecto-sp13_S_contig12854.2354.1|Name=mRNA_Ecto-sp13_S_contig12854.2354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp
NTWSSYSGEDGEEPSATFFGNGSGIALVTYVPREAGTSFLYVHVNDLQVA
GSPFEVDVSAGPARGANATASGSALALATAGNNSSFIIQARDGGANPAAE
ESEMKA
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mRNA from alignment at Ecto-sp13_S_contig12854:1114..2408-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12854.2354.1 ID=mRNA_Ecto-sp13_S_contig12854.2354.1|Name=mRNA_Ecto-sp13_S_contig12854.2354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1295bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12854:1114..2408- (Ectocarpus species13 EcNAP12_S_4_19m)
AACACTTGGAGTTCCTACTCGGGGGAAGATGGGGAGGAGCCTTCGGCGAC
GTTCTTCGGGAACGGTTCCGGGATAGCGCTGGTCACGTACGTCCCACGAG
AGGCCGGGACAAGCTTCCTGTACGGTGAGAACAAGGCTCTGTCGTGTGCA
CTGTCTGAGCAAAACCTTCGCCGAGGGAGGTGCTTCTCGCGCTCTCATTC
GTTGGTACTTTGTGCTCTTTGTCCGAAGGGTCGTGCAGAAACAGTACACT
GGTTGCGAGTGTATGCGCTTCGAGCTTGCCCCTTGCAAAAATGATGAGAG
ACGCATAGCACGAGCGATGTAGGAGCTGAAGTACCTATTGGAGTCGTACC
GGGTTGATGGGTTGCCTTCATATATCATTACCCTTCTGATCGTTACCGAG
CGCCGCCTCCTCCTCCTCCGCACTTGTCCAAGCGGTAGGGGAATATTTTT
TCTCCGTGGTCACAGGCTGCTCAGTAACACGACGCGGACAGAGATACCGA
TCCAAGATGTTATTCTTGAGAAACAAGAGTTCCTGAAGTACCCAAACTCA
CGGGCACGAGTAACGCTCATCATTCGTCTGTTTCTACATGTATAGGTGGC
GGATGCGTTATAGCTGTGAACGGCTGATTTGAAGTTGCGGGAGTCGCCCC
AGTCTTGCGTAGGCTCAACAGACACATCCTATTTATCTCCATCCAGCCGA
CTGAAGAGGGGGCCATGCTCGGCGATACGGCTGTGGTTTTCCTTGAAGAG
CCTACCACATTCGTCAGAATCGAAAAGGAACCCTCGCGGTTGAGGCCATG
ACTTCGAACGGGAACAACTTAGGGCATACTTCCAAGTATTGCTACGTATG
TAAATATACTGGGAATGAATGGAGGGCACAGCTTTAGTTGCGCTCCTATG
CATGTGTGCGTATACGTTGTCACATTGCAACAATTTATCTTGTTCATGCT
ACCACATCGGTCATCTTTGACCCGTCTACATGTTGAAACTATCTGCCACC
AGTTCTGCTCAAAGAATGTTCTCTGGCAATCACAATGAAAACGATGGCGA
AATTTTTTTTTGCCGTCGTCCACCTCGTTGTCGATCTTGTTTTCCACCAG
TCCACGTGAACGATCTCCAGGTGGCCGGTAGCCCCTTCGAGGTGGACGTT
TCGGCAGGGCCGGCGCGTGGCGCAAACGCTACCGCTTCGGGCTCCGCCCT
CGCCCTTGCTACCGCCGGAAATAACTCCTCCTTCATTATCCAGGCCAGAG
ATGGCGGAGCCAACCCTGCCGCCGAAGAGAGTGAAATGAAAGCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12854:1114..2408-

>mRNA_Ecto-sp13_S_contig12854.2354.1 ID=mRNA_Ecto-sp13_S_contig12854.2354.1|Name=mRNA_Ecto-sp13_S_contig12854.2354.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12854:1114..2408- (Ectocarpus species13 EcNAP12_S_4_19m)
AACACTTGGAGTTCCTACTCGGGGGAAGATGGGGAGGAGCCTTCGGCGAC
GTTCTTCGGGAACGGTTCCGGGATAGCGCTGGTCACGTACGTCCCACGAG
AGGCCGGGACAAGCTTCCTGTACGTCCACGTGAACGATCTCCAGGTGGCC
GGTAGCCCCTTCGAGGTGGACGTTTCGGCAGGGCCGGCGCGTGGCGCAAA
CGCTACCGCTTCGGGCTCCGCCCTCGCCCTTGCTACCGCCGGAAATAACT
CCTCCTTCATTATCCAGGCCAGAGATGGCGGAGCCAACCCTGCCGCCGAA
GAGAGTGAAATGAAAGCA
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