mRNA_Ecto-sp13_S_contig12851.2352.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12851.2352.1
Unique NamemRNA_Ecto-sp13_S_contig12851.2352.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12851.2352.1 vs. uniprot
Match: D8LKY8_ECTSI (Pleckstrin homology (PH) domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKY8_ECTSI)

HSP 1 Score: 165 bits (417), Expect = 1.470e-40
Identity = 108/135 (80.00%), Postives = 110/135 (81.48%), Query Frame = 3 
Query:    3 GVQEIDDNDENSRPTEFDLSNSEEAEMEERIVVRKPPAVLVAMSRGTSATSSTVGGAXXXXXXDEGFGDDARSAAGSSGSGSSRDSSLLLTAVSPSRVPPPLVSVASSATLPPVSMASSVVSGGSFSNPWLSPIP 407
            GVQE +DNDENSRPTEFDL NSEE E+EERIVVRKPP VLVAMSRGTSAT       XXXXXXDE FGDDARSAAGSSGSGSSRDSSLLLTAVSPSRVPPPLVSVAS  TLPPVS ASS   GG    PW  P P
Sbjct:  909 GVQETNDNDENSRPTEFDLGNSEEVEVEERIVVRKPPPVLVAMSRGTSATXXXXXXXXXXXXXDEVFGDDARSAAGSSGSGSSRDSSLLLTAVSPSRVPPPLVSVASWGTLPPVSRASSCSLGGLVLQPWAIPHP 1043
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12851.2352.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LKY8_ECTSI1.470e-4080.00Pleckstrin homology (PH) domain-containing protein... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12851contigEcto-sp13_S_contig12851:700..2014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score129.4
Seed ortholog evalue2e-27
Seed eggNOG ortholog2880.D8LKY8
Model size1315
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)
EggNOG OGsCOG5422@1,KOG4424@2759
Cds size645
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.7981086-UTR-Ecto-sp13_S_contig12851:699..7791681462687.7981086-UTR-Ecto-sp13_S_contig12851:699..779Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12851 700..779 +
1681462687.815518-UTR-Ecto-sp13_S_contig12851:1424..20141681462687.815518-UTR-Ecto-sp13_S_contig12851:1424..2014Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12851 1425..2014 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.807452-CDS-Ecto-sp13_S_contig12851:779..14241681462687.807452-CDS-Ecto-sp13_S_contig12851:779..1424Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12851 780..1424 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12851.2352.1prot_Ecto-sp13_S_contig12851.2352.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12851 780..1424 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12851.2352.1

>prot_Ecto-sp13_S_contig12851.2352.1 ID=prot_Ecto-sp13_S_contig12851.2352.1|Name=mRNA_Ecto-sp13_S_contig12851.2352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=215bp
MEERIVVRKPPAVLVAMSRGTSATSSTVGGAGDYGEYDEGFGDDARSAAG
SSGSGSSRDSSLLLTAVSPSRVPPPLVSVASSATLPPVSMASSVVSGGSF
SNPWLSPIPNHHHRQQQQQHQHHQQRDDSAESSPPADSMSWLQPLPPPPP
PPQKDGKAKAENPWEPSTSRAAPAPARRGGMGLAYPSGRWVQTPQTGEIL
EEQPPAEPKDGGKV*
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mRNA from alignment at Ecto-sp13_S_contig12851:700..2014+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12851.2352.1 ID=mRNA_Ecto-sp13_S_contig12851.2352.1|Name=mRNA_Ecto-sp13_S_contig12851.2352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12851:700..2014+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGGGGTGCAGGAAATCGACGACAACGATGAGAACTCTCGCCCGACGGAG
TTCGACCTGAGCAACAGCGAGGAAGCGGAGATGGAGGAGAGGATCGTCGT
CCGGAAGCCGCCCGCCGTCCTGGTGGCCATGTCCAGGGGCACGAGCGCCA
CCTCCAGCACGGTGGGGGGAGCCGGCGACTACGGCGAGTACGACGAGGGC
TTCGGGGACGACGCGCGTTCCGCGGCGGGATCATCCGGGTCCGGGTCCAG
CCGCGACTCGTCCCTCTTGCTGACCGCGGTCTCCCCGTCGCGGGTGCCCC
CCCCCCTCGTCTCTGTCGCATCTTCGGCCACGCTCCCCCCGGTGTCGATG
GCCTCCTCGGTAGTCTCGGGCGGCTCGTTTTCCAACCCCTGGCTATCCCC
CATCCCGAACCACCACCACCGGCAGCAGCAGCAGCAGCACCAGCACCACC
AGCAGCGGGATGATTCCGCGGAGTCCTCCCCCCCCGCGGACTCGATGTCG
TGGCTGCAGCCGCTGCCGCCGCCGCCCCCGCCCCCACAGAAGGACGGGAA
GGCGAAGGCGGAGAACCCTTGGGAGCCGTCAACGTCGCGGGCGGCGCCGG
CGCCGGCCAGGCGGGGGGGGATGGGGCTGGCCTACCCGTCCGGAAGGTGG
GTACAGACACCCCAGACGGGGGAGATACTGGAGGAGCAGCCGCCCGCGGA
GCCCAAGGACGGGGGGAAGGTGTAGCACGGTACGGTATGTAGTATGATAC
GGTGCGGTAAACTTGGTGGCCTGTCGAAGTTGTGTCGTCTGTCTGTGTCG
TCTGTGCCTTTAGTAGTTTTAAGACTGGCATGCATCGACCGAGCTATTAT
TGTAGCCTTGGTGGCGGAAGCTGGCTGACGTAGGACAATGTGACGAGTCT
TTTTCGTCATTTTCACCGACAAGCGGGGCGGTGACGAGAACGACTCCTAA
TAATAGCGGTCCGCCGGGTCGATAGCGGGGTAATGTGACGTGTGGGCAAA
GTGGTGTGTGTGCGTGATTTATTGTCGCGGTCTCATGGATGGCTGGGACT
TCGGGTGAGGTTCGCGTCAACGGAGAGAAAACGGCGTTGATGTTAAACAC
GATTTTTTTGTTGTGTGTATGCCTCGGTGTGGCTGGCTGGCTGACTGGCC
AGCTGGTGAGGTGACGTCGGCTATGCTGCGAATGGAGTGAAGGTGGACGG
GATCGGCTGGCTCGTGGACGATTTCCCGCGAACCGAACAGAGGTACAGCT
TCGGTTTGTGGCCTCGAAGAGAGTGAGTGCGGTACGGCACGGCACGGTAG
GATGTGCCATGGCTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12851:700..2014+

>mRNA_Ecto-sp13_S_contig12851.2352.1 ID=mRNA_Ecto-sp13_S_contig12851.2352.1|Name=mRNA_Ecto-sp13_S_contig12851.2352.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=645bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12851:700..2014+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAGGAGAGGATCGTCGTCCGGAAGCCGCCCGCCGTCCTGGTGGCCAT
GTCCAGGGGCACGAGCGCCACCTCCAGCACGGTGGGGGGAGCCGGCGACT
ACGGCGAGTACGACGAGGGCTTCGGGGACGACGCGCGTTCCGCGGCGGGA
TCATCCGGGTCCGGGTCCAGCCGCGACTCGTCCCTCTTGCTGACCGCGGT
CTCCCCGTCGCGGGTGCCCCCCCCCCTCGTCTCTGTCGCATCTTCGGCCA
CGCTCCCCCCGGTGTCGATGGCCTCCTCGGTAGTCTCGGGCGGCTCGTTT
TCCAACCCCTGGCTATCCCCCATCCCGAACCACCACCACCGGCAGCAGCA
GCAGCAGCACCAGCACCACCAGCAGCGGGATGATTCCGCGGAGTCCTCCC
CCCCCGCGGACTCGATGTCGTGGCTGCAGCCGCTGCCGCCGCCGCCCCCG
CCCCCACAGAAGGACGGGAAGGCGAAGGCGGAGAACCCTTGGGAGCCGTC
AACGTCGCGGGCGGCGCCGGCGCCGGCCAGGCGGGGGGGGATGGGGCTGG
CCTACCCGTCCGGAAGGTGGGTACAGACACCCCAGACGGGGGAGATACTG
GAGGAGCAGCCGCCCGCGGAGCCCAAGGACGGGGGGAAGGTGTAG
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