mRNA_Ecto-sp13_S_contig12839.2343.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12839.2343.1
Unique NamemRNA_Ecto-sp13_S_contig12839.2343.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12839.2343.1 vs. uniprot
Match: A0A6H5L363_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L363_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 1.100e-11
Identity = 72/88 (81.82%), Postives = 73/88 (82.95%), Query Frame = 3 
Query:  171 FERGASRGEVTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVKEAGGGAGTPGRLGQSSPLPQQHHPRHQSPPQSQLPLPLPHPQ 434
            FERGASRGEV XXXXXXXXXXXXXXXXXXXXXXXXXX        +EAGGG GTPGRLGQ SPLPQQHHPRHQ  PQ QLPLPL HPQ
Sbjct:  126 FERGASRGEVAXXXXXXXXXXXXXXXXXXXXXXXXXX-------XEEAGGGVGTPGRLGQLSPLPQQHHPRHQPLPQPQLPLPLAHPQ 206
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12839.2343.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L363_9PHAE1.100e-1181.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12839contigEcto-sp13_S_contig12839:1450..2190 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size741
Hectar predicted targeting categoryother localisation
Exons1
Cds size579
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.0954034-UTR-Ecto-sp13_S_contig12839:1449..16111681462687.0954034-UTR-Ecto-sp13_S_contig12839:1449..1611Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12839 1450..1611 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.1037958-CDS-Ecto-sp13_S_contig12839:1611..21901681462687.1037958-CDS-Ecto-sp13_S_contig12839:1611..2190Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12839 1612..2190 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12839.2343.1prot_Ecto-sp13_S_contig12839.2343.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12839 1612..2190 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12839.2343.1

>prot_Ecto-sp13_S_contig12839.2343.1 ID=prot_Ecto-sp13_S_contig12839.2343.1|Name=mRNA_Ecto-sp13_S_contig12839.2343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
MAASREELAEGRLPTTRISSEDPPPRQWWRRRWLRRRRRPLTAEVLLSRK
PAAGRGRRDGWGNRRRCRSSITHDISPRPSRSYRYLSLTPRLRSCRRVAT
RSRSLRINNTSTSSSSSRLSITIEASSCRLCLQQRKAAAPEAVPRPTFLI
IRSLAPPPPRRGVIGDLIPRCHPDPPQPCPANFSARGSQEGAL
back to top

mRNA from alignment at Ecto-sp13_S_contig12839:1450..2190+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12839.2343.1 ID=mRNA_Ecto-sp13_S_contig12839.2343.1|Name=mRNA_Ecto-sp13_S_contig12839.2343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=741bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12839:1450..2190+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCAGCGGCGGCGGAGGCGGCAGCAGGGACCACGCAGCCTCCTGCTTCG
TCGACAATCCCTCCACCGGGGGCACCGGCGCCGCCGCCTTCCGAGACGCA
GCAGCGCCAGAATGGAGTCGCGACAGTTGAAGGAGGAGGGGAGGCTGTAG
ACCGAGGGGGAAATGGCGGCTTCGAGAGAGGAGCTAGCAGAGGGGAGGTT
ACCGACGACGAGGATCAGCAGCGAAGACCCGCCTCCGCGGCAGTGGTGGC
GGCGGCGGTGGCTGCGCAGGCGGCGGCGACCGCTAACGGCGGAAGTCCTG
CTGTCAAGGAAGCCGGCGGCGGGGCGGGGACGCCGGGACGGCTGGGGCAA
TCGTCGCCGCTGCCGCAGCAGCATCACCCACGACATCAGTCCCCGCCCCA
GTCGCAGCTACCGCTACCTCTCCCTCACCCCCAGGTTGCGTTCCTGCCGC
CGCGTGGCCACTCGCAGCAGGAGTCTCCGCATCAACAACACCAGCACTTC
CAGCAGCAGCAGCAGGCTGAGCATAACCATCGAAGCCAGCAGTTGCCGCC
TCTGTCTGCAACAGCGCAAGGCGGCGGCACCGGAAGCGGTGCCTCGACCC
ACTTTCCTCATCATTCGTAGTTTAGCCCCCCCCCCGCCAAGGAGGGGGGT
AATAGGTGATTTGATTCCTCGGTGCCACCCAGACCCCCCCCAACCATGCC
CAGCCAACTTTTCAGCGCGTGGATCCCAGGAAGGTGCCTTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12839:1450..2190+

>mRNA_Ecto-sp13_S_contig12839.2343.1 ID=mRNA_Ecto-sp13_S_contig12839.2343.1|Name=mRNA_Ecto-sp13_S_contig12839.2343.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12839:1450..2190+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGCTTCGAGAGAGGAGCTAGCAGAGGGGAGGTTACCGACGACGAG
GATCAGCAGCGAAGACCCGCCTCCGCGGCAGTGGTGGCGGCGGCGGTGGC
TGCGCAGGCGGCGGCGACCGCTAACGGCGGAAGTCCTGCTGTCAAGGAAG
CCGGCGGCGGGGCGGGGACGCCGGGACGGCTGGGGCAATCGTCGCCGCTG
CCGCAGCAGCATCACCCACGACATCAGTCCCCGCCCCAGTCGCAGCTACC
GCTACCTCTCCCTCACCCCCAGGTTGCGTTCCTGCCGCCGCGTGGCCACT
CGCAGCAGGAGTCTCCGCATCAACAACACCAGCACTTCCAGCAGCAGCAG
CAGGCTGAGCATAACCATCGAAGCCAGCAGTTGCCGCCTCTGTCTGCAAC
AGCGCAAGGCGGCGGCACCGGAAGCGGTGCCTCGACCCACTTTCCTCATC
ATTCGTAGTTTAGCCCCCCCCCCGCCAAGGAGGGGGGTAATAGGTGATTT
GATTCCTCGGTGCCACCCAGACCCCCCCCAACCATGCCCAGCCAACTTTT
CAGCGCGTGGATCCCAGGAAGGTGCCTTG
back to top