mRNA_Ecto-sp13_S_contig12838.2342.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12838.2342.1
Unique NamemRNA_Ecto-sp13_S_contig12838.2342.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12838.2342.1 vs. uniprot
Match: D7FMS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS0_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.620e-19
Identity = 39/51 (76.47%), Postives = 45/51 (88.24%), Query Frame = 2 
Query:   65 KAFSLDGTWVSRLWCPLKASRIRLELNQAAVLMTARAAMHANSTRELSHKR 217
            K F+LDGTW SRLWCP KA R+RLEL+Q+AV+MTARA MHANSTR+LSH R
Sbjct:   29 KDFALDGTWTSRLWCPRKAVRVRLELSQSAVVMTARATMHANSTRKLSHTR 79
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BLAST of mRNA_Ecto-sp13_S_contig12838.2342.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 50.8 bits (120), Expect = 1.550e-5
Identity = 21/30 (70.00%), Postives = 24/30 (80.00%), Query Frame = 1 
Query:    1 PSLEEWQGISAFCGNPPCRMMESLFAGRNL 90
            P LEEWQGISAFC N PCR +E+LFA R +
Sbjct:  452 PPLEEWQGISAFCDNVPCRSIEALFARRKV 481
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BLAST of mRNA_Ecto-sp13_S_contig12838.2342.1 vs. uniprot
Match: D7FMS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS1_ECTSI)

HSP 1 Score: 50.1 bits (118), Expect = 2.870e-5
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:    1 PSLEEWQGISAFCGNPPCRMMESLFAGR 84
            P LEEWQGISAFC N PCR +E+LFA R
Sbjct:  343 PPLEEWQGISAFCDNVPCRSIEALFARR 370
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12838.2342.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FMS0_ECTSI1.620e-1976.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JUG6_9PHAE1.550e-570.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS1_ECTSI2.870e-575.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12838contigEcto-sp13_S_contig12838:4444..4920 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size227
Hectar predicted targeting categoryother localisation
Exons2
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.0595863-CDS-Ecto-sp13_S_contig12838:4445..46141681462687.0595863-CDS-Ecto-sp13_S_contig12838:4445..4614Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12838 4446..4614 -
1681462687.070397-CDS-Ecto-sp13_S_contig12838:4864..49201681462687.070397-CDS-Ecto-sp13_S_contig12838:4864..4920Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12838 4865..4920 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12838.2342.1prot_Ecto-sp13_S_contig12838.2342.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12838 4446..4920 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12838.2342.1

>prot_Ecto-sp13_S_contig12838.2342.1 ID=prot_Ecto-sp13_S_contig12838.2342.1|Name=mRNA_Ecto-sp13_S_contig12838.2342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=75bp
PSLEEWQGISAFCGNPPCRMMESLFAGRNLGFSSMVSSEGVADTSGAEPG
RGSDDRTRSDAREQHEGVVAQAAAQ
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mRNA from alignment at Ecto-sp13_S_contig12838:4444..4920-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12838.2342.1 ID=mRNA_Ecto-sp13_S_contig12838.2342.1|Name=mRNA_Ecto-sp13_S_contig12838.2342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=477bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12838:4444..4920- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCGTTGGAGGAATGGCAAGGGATATCAGCTTTTTGTGGCAATCCCCC
GTGCAGGTATGTTCAGATTCGGACAATTGTGTGCGTCCATTATCCTTTTA
ACTCTTCATGAGGAAGTATTCTACGGTGGGTTGCCAACCTGCCGTGAAAG
GTAACTTTCTTCGTACCTTTGAAGGCGTTCATCCCGTATCTCAATTGCGT
GCCTGTAATTACCCACCGGTGAAAGCTATCTAGCACCCTTGACCAGATGG
GGGAACTGTGACTTGGTGCACACGCACGTCCCCACGCACACGCTTTCATC
GGTCAGGATGATGGAAAGCCTTTTCGCTGGACGGAACTTGGGTTTCTCGT
CTATGGTGTCCTCTGAAGGCGTCGCGGATACGTCTGGAGCTGAACCAGGC
CGCGGTTCTGATGACCGCACGCGCAGCGATGCACGCGAACAGCACGAGGG
AGTTGTCGCACAAGCGGCGGCTCAAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12838:4444..4920-

>mRNA_Ecto-sp13_S_contig12838.2342.1 ID=mRNA_Ecto-sp13_S_contig12838.2342.1|Name=mRNA_Ecto-sp13_S_contig12838.2342.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=225bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12838:4444..4920- (Ectocarpus species13 EcNAP12_S_4_19m)
CCGTCGTTGGAGGAATGGCAAGGGATATCAGCTTTTTGTGGCAATCCCCC
GTGCAGGATGATGGAAAGCCTTTTCGCTGGACGGAACTTGGGTTTCTCGT
CTATGGTGTCCTCTGAAGGCGTCGCGGATACGTCTGGAGCTGAACCAGGC
CGCGGTTCTGATGACCGCACGCGCAGCGATGCACGCGAACAGCACGAGGG
AGTTGTCGCACAAGCGGCGGCTCAA
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