mRNA_Ecto-sp13_S_contig12838.2341.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12838.2341.1
Unique NamemRNA_Ecto-sp13_S_contig12838.2341.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12838.2341.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 2.790e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 NACNSTRPSGSLSVPPLEEWDGLSGIYDNGLCRFVQ 108
            NACN TRP GSL+ PPLEEW G+S   DN  CR ++
Sbjct:  438 NACNLTRPQGSLAFPPLEEWQGISAFCDNVPCRSIE 473
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BLAST of mRNA_Ecto-sp13_S_contig12838.2341.1 vs. uniprot
Match: D7FMS1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS1_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 3.760e-6
Identity = 22/36 (61.11%), Postives = 26/36 (72.22%), Query Frame = 1 
Query:    1 NACNSTRPSGSLSVPPLEEWDGLSGIYDNGLCRFVQ 108
            NACN TRP GSL+ PPLEEW G+S   DN  CR ++
Sbjct:  329 NACNLTRPPGSLAFPPLEEWQGISAFCDNVPCRSIE 364
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12838.2341.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JUG6_9PHAE2.790e-661.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FMS1_ECTSI3.760e-661.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12838contigEcto-sp13_S_contig12838:2066..2354 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size290
Hectar predicted targeting categoryother localisation
Exons1
Cds size243
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.0167234-CDS-Ecto-sp13_S_contig12838:2065..23081681462687.0167234-CDS-Ecto-sp13_S_contig12838:2065..2308Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12838 2066..2308 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462687.025275-UTR-Ecto-sp13_S_contig12838:2308..23541681462687.025275-UTR-Ecto-sp13_S_contig12838:2308..2354Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12838 2309..2354 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12838.2341.1prot_Ecto-sp13_S_contig12838.2341.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12838 2066..2308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12838.2341.1

>prot_Ecto-sp13_S_contig12838.2341.1 ID=prot_Ecto-sp13_S_contig12838.2341.1|Name=mRNA_Ecto-sp13_S_contig12838.2341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=81bp
NACNSTRPSGSLSVPPLEEWDGLSGIYDNGLCRFVQLGDCGVRASSLLLL
RKIRKWIGFLGGMVARSLLFTCHEHIKKYS*
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mRNA from alignment at Ecto-sp13_S_contig12838:2066..2354+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12838.2341.1 ID=mRNA_Ecto-sp13_S_contig12838.2341.1|Name=mRNA_Ecto-sp13_S_contig12838.2341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12838:2066..2354+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCTTGCAATAGCACGCGGCCCTCAGGCTCGTTATCTGTTCCGCCGTT
GGAGGAGTGGGACGGCTTATCTGGGATCTATGACAACGGCCTGTGCAGGT
TTGTTCAGCTTGGGGACTGTGGTGTGCGTGCGTCATCCTTACTCCTGTTG
AGGAAAATTCGAAAGTGGATTGGTTTCTTAGGCGGCATGGTTGCCCGAAG
CCTTCTTTTCACCTGCCATGAGCATATTAAGAAGTATTCTTGAGATAGCT
GTGAAAGCATTCAACGAATAGTCAACTGCTCGCCTGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12838:2066..2354+

>mRNA_Ecto-sp13_S_contig12838.2341.1 ID=mRNA_Ecto-sp13_S_contig12838.2341.1|Name=mRNA_Ecto-sp13_S_contig12838.2341.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=243bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12838:2066..2354+ (Ectocarpus species13 EcNAP12_S_4_19m)
AACGCTTGCAATAGCACGCGGCCCTCAGGCTCGTTATCTGTTCCGCCGTT
GGAGGAGTGGGACGGCTTATCTGGGATCTATGACAACGGCCTGTGCAGGT
TTGTTCAGCTTGGGGACTGTGGTGTGCGTGCGTCATCCTTACTCCTGTTG
AGGAAAATTCGAAAGTGGATTGGTTTCTTAGGCGGCATGGTTGCCCGAAG
CCTTCTTTTCACCTGCCATGAGCATATTAAGAAGTATTCTTGA
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