mRNA_Ecto-sp13_S_contig12832.2338.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12832.2338.1
Unique NamemRNA_Ecto-sp13_S_contig12832.2338.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12832.2338.1 vs. uniprot
Match: A0A6H5K0A3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A3_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 3.600e-47
Identity = 133/150 (88.67%), Postives = 137/150 (91.33%), Query Frame = 1 
Query:    1 SAGLAFGGSGYGEYRGSVYSGSPPSEHRNRSYGRQQPQNHHQNYSFNNLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGQVYPALAVGASGHWHHGGGVGGQSFMPSYCHAQQRDEDHVRYGGEETGYTSGEETGG 450
            SAGLAFGGSGYGEYRGSVYSGSPPSEHRNRSYGRQ+     QNY+F+NLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX GQVYPALA GA  HWHHGGGVGG SFMPSY HAQQR+ED VRYGG ETGYTSGEETGG
Sbjct:  156 SAGLAFGGSGYGEYRGSVYSGSPPSEHRNRSYGRQRQXXXXQNYAFSNLLGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-GQVYPALAEGAGDHWHHGGGVGGHSFMPSYRHAQQREEDRVRYGGVETGYTSGEETGG 304
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12832.2338.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K0A3_9PHAE3.600e-4788.67Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12832contigEcto-sp13_S_contig12832:2463..2922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size460
Hectar predicted targeting categoryother localisation
Exons1
Cds size459
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462686.8797815-CDS-Ecto-sp13_S_contig12832:2462..29211681462686.8797815-CDS-Ecto-sp13_S_contig12832:2462..2921Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12832 2463..2921 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12832.2338.1prot_Ecto-sp13_S_contig12832.2338.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12832 2463..2921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12832.2338.1

>prot_Ecto-sp13_S_contig12832.2338.1 ID=prot_Ecto-sp13_S_contig12832.2338.1|Name=mRNA_Ecto-sp13_S_contig12832.2338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=153bp
SAGLAFGGSGYGEYRGSVYSGSPPSEHRNRSYGRQQPQNHHQNYSFNNLL
GGGGSVHRASSSFFSSSGQRPPQQQQNRRRSFSAAAAAAAAAGQVYPALA
VGASGHWHHGGGVGGQSFMPSYCHAQQRDEDHVRYGGEETGYTSGEETGG
AAG
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mRNA from alignment at Ecto-sp13_S_contig12832:2463..2922+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12832.2338.1 ID=mRNA_Ecto-sp13_S_contig12832.2338.1|Name=mRNA_Ecto-sp13_S_contig12832.2338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=460bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12832:2463..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGCCGGGCTTGCCTTCGGCGGCAGCGGGTACGGGGAGTACCGCGGGAG
CGTGTACAGCGGGTCGCCGCCCTCGGAGCACCGTAATCGCTCTTACGGGC
GGCAGCAGCCGCAGAATCACCACCAGAACTACTCCTTCAACAACCTACTC
GGTGGCGGCGGCAGTGTCCACCGAGCCTCGTCTTCTTTCTTCTCTTCGTC
GGGCCAGCGCCCTCCCCAGCAGCAGCAGAACCGGCGGCGTTCCTTCTCCG
CAGCAGCAGCAGCCGCCGCCGCCGCCGGTCAGGTCTACCCCGCTCTGGCT
GTCGGCGCCAGTGGCCACTGGCATCATGGTGGCGGGGTCGGGGGGCAGTC
CTTCATGCCGAGCTACTGCCACGCGCAGCAGCGAGATGAGGATCATGTTC
GGTACGGGGGCGAGGAGACAGGGTACACGTCGGGAGAGGAGACCGGGGGG
GCGGCGGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12832:2463..2922+

>mRNA_Ecto-sp13_S_contig12832.2338.1 ID=mRNA_Ecto-sp13_S_contig12832.2338.1|Name=mRNA_Ecto-sp13_S_contig12832.2338.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12832:2463..2922+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGGCCGGGCTTGCCTTCGGCGGCAGCGGGTACGGGGAGTACCGCGGGAG
CGTGTACAGCGGGTCGCCGCCCTCGGAGCACCGTAATCGCTCTTACGGGC
GGCAGCAGCCGCAGAATCACCACCAGAACTACTCCTTCAACAACCTACTC
GGTGGCGGCGGCAGTGTCCACCGAGCCTCGTCTTCTTTCTTCTCTTCGTC
GGGCCAGCGCCCTCCCCAGCAGCAGCAGAACCGGCGGCGTTCCTTCTCCG
CAGCAGCAGCAGCCGCCGCCGCCGCCGGTCAGGTCTACCCCGCTCTGGCT
GTCGGCGCCAGTGGCCACTGGCATCATGGTGGCGGGGTCGGGGGGCAGTC
CTTCATGCCGAGCTACTGCCACGCGCAGCAGCGAGATGAGGATCATGTTC
GGTACGGGGGCGAGGAGACAGGGTACACGTCGGGAGAGGAGACCGGGGGG
GCGGCGGGG
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