mRNA_Ecto-sp13_S_contig12805.2319.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12805.2319.1
Unique NamemRNA_Ecto-sp13_S_contig12805.2319.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12805.2319.1 vs. uniprot
Match: A0A6H5JE51_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JE51_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 2.810e-8
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  136 CLQCDERGQPDGWNAEERRRFLQ*DVCYVIGLR 234
            C +C ERGQPDGWN + RR FL+ DVCY IG R
Sbjct:   16 CPRCGERGQPDGWNTDARRVFLEQDVCYFIGYR 48
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BLAST of mRNA_Ecto-sp13_S_contig12805.2319.1 vs. uniprot
Match: A0A6H5KSM2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM2_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 1.170e-7
Identity = 22/33 (66.67%), Postives = 25/33 (75.76%), Query Frame = 1 
Query:  136 CLQCDERGQPDGWNAEERRRFLQ*DVCYVIGLR 234
            C  C ERGQPDGWN + RR FL+ DVCY+IG R
Sbjct:   81 CPHCGERGQPDGWNTDARRVFLEQDVCYLIGYR 113
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BLAST of mRNA_Ecto-sp13_S_contig12805.2319.1 vs. uniprot
Match: D7FIV2_ECTSI (3'-5' exonuclease domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV2_ECTSI)

HSP 1 Score: 55.8 bits (133), Expect = 4.300e-7
Identity = 21/35 (60.00%), Postives = 26/35 (74.29%), Query Frame = 1 
Query:  136 CLQCDERGQPDGWNAEERRRFLQ*DVCYVIGLRRI 240
            C  C++R QPDGWN E RR FL+ DVCY+IG R +
Sbjct:   55 CPHCNKRAQPDGWNTEPRRVFLEDDVCYLIGYRYL 89
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12805.2319.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JE51_9PHAE2.810e-866.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM2_9PHAE1.170e-766.67Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIV2_ECTSI4.300e-760.003'-5' exonuclease domain-containing protein n=1 Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12805contigEcto-sp13_S_contig12805:2701..3989 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size261
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Cds size141
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.280156-UTR-Ecto-sp13_S_contig12805:2700..27281681462685.280156-UTR-Ecto-sp13_S_contig12805:2700..2728Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12805 2701..2728 -
1681462685.2915397-UTR-Ecto-sp13_S_contig12805:3512..35961681462685.2915397-UTR-Ecto-sp13_S_contig12805:3512..3596Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12805 3513..3596 -
1681462685.3202276-UTR-Ecto-sp13_S_contig12805:3981..39891681462685.3202276-UTR-Ecto-sp13_S_contig12805:3981..3989Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12805 3982..3989 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.300551-CDS-Ecto-sp13_S_contig12805:3596..36971681462685.300551-CDS-Ecto-sp13_S_contig12805:3596..3697Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12805 3597..3697 -
1681462685.3105562-CDS-Ecto-sp13_S_contig12805:3941..39811681462685.3105562-CDS-Ecto-sp13_S_contig12805:3941..3981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12805 3942..3981 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12805.2319.1prot_Ecto-sp13_S_contig12805.2319.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12805 3597..3981 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12805.2319.1

>prot_Ecto-sp13_S_contig12805.2319.1 ID=prot_Ecto-sp13_S_contig12805.2319.1|Name=mRNA_Ecto-sp13_S_contig12805.2319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=47bp
MDIAPLPSLQKDGGESSVESLGVFVQVPGHMTHASRRTWSTFLSAV*
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mRNA from alignment at Ecto-sp13_S_contig12805:2701..3989-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12805.2319.1 ID=mRNA_Ecto-sp13_S_contig12805.2319.1|Name=mRNA_Ecto-sp13_S_contig12805.2319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1289bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12805:2701..3989- (Ectocarpus species13 EcNAP12_S_4_19m)
GATAACGGATGGACATTGCTCCTCTGCCGTCGCTACAAAAGGACGGTGGT
ATGTACAAGAGTAGACTAGGGGTGGTAACGAAGGAGGGTGTTGTTGGATT
TGAAATTGTTCCACGGTGCAATCTGTCTGTAGTTCATACAGTAGAATGCT
GCTGCTGTGTAGGTTTGAGCAGGAACTTCTTGACAACAACACCATGATGA
GACGATCGCCCGTTGTTGGTCGATAGCACCTAGGTCCTTGACACTGTCCG
CAAAAGTAGAGCTTTGAGCAGTTTTTTCTGATTCTGTTACAGGTGAATCA
TCGGTGGAGTCCTTGGGGGTGTTCGTACAGGTGCCAGGACACATGACACA
TGCATCTAGGAGGACATGGAGTACGTTCCTGTCTGCAGTGTGACGAGCGT
GGGCAACCTGATGGGTGGAACGCCGAGGAACGCCGACGATTTCTACAATA
AGATGTTTGCTATGTGATCGGGTTGAGGTATGCCTAGCCACACCGCCGCT
GGATATTCGTTTTTGGGACATCCCCAACTCTTCTCTTGATGTGTGTACGG
CTACAGGTTGCGGGAAATCGAAATTGCAGATGCCGCGACATTTATACAAA
TCACGTTGAATAGTCTATCTTGGTAGGATGATGGTTGCGCGTGGACGAGT
GAAGGTTTTCTGCATCGTCGACCTCACTTGATGGACGACCGTGTGCTGGC
GAGCGATGATTGTTACATGTAGTACGCCAAAGTTCGGCTGCCTGCTGGGC
TGGATGGGACGCATGCACACGGGATGCTTCAGATTGATACGACCAATTGG
GCTAGACCTTGCTGTGGCATGCAAGTGTCGTATTGGCAGCAATAAAAGAT
CGAGAATAAAATCAACTTGTGCAGAGTTCTGTCTTGCTTGCTTCGTATCT
TCGACTTTGTCTCACCTACACCTCCCACCATAAGTCCCTCCTCGGTCTCC
TCCGCGTTCTTAGTTATTTTTTTCGATTTTCCGAAGGTCATGACAACTGC
ATCGGTCCACAACCGGAAGAACGACCTCAAAATGACGTTTGTCTATCGCT
TTTCCAGCCATGTCTTCGACTCTCAGGAATCCTTTTCATTTGTACGAAAT
GACGTTGGGTTGCGCCGGTTGCCTTGTCGTGAGGTTGAACAAATCTATGC
CTTTCTTGTGAAGTTTCATACCGATTGTCTTGCACATATATGCAAGTCTG
GCATGCTTTCTTTGCCGCCACTAAACTGCTCCTCTATGTTGTTACACGGT
TCTTGTTACAGGCGAATTTCGTGAGAGATGGAGAAGGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12805:2701..3989-

>mRNA_Ecto-sp13_S_contig12805.2319.1 ID=mRNA_Ecto-sp13_S_contig12805.2319.1|Name=mRNA_Ecto-sp13_S_contig12805.2319.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12805:2701..3989- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATTGCTCCTCTGCCGTCGCTACAAAAGGACGGTGGTGAATCATC
GGTGGAGTCCTTGGGGGTGTTCGTACAGGTGCCAGGACACATGACACATG
CATCTAGGAGGACATGGAGTACGTTCCTGTCTGCAGTGTGA
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