mRNA_Ecto-sp13_S_contig1280.2315.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1280.2315.1
Unique NamemRNA_Ecto-sp13_S_contig1280.2315.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1280.2315.1 vs. uniprot
Match: D7FK07_ECTSI (Calmodulin-binding WW domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK07_ECTSI)

HSP 1 Score: 186 bits (473), Expect = 7.390e-53
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 1 
Query:    1 KTRRAGDPPVSREEFERILAVCDLPYSLTWADATYEMCNGEVGVQGEVEAYSGYGEWKAKKKKRKALRTREQFWAAFGATLVSAGDDCDDLLCG 282
            KTRRAGDPPVSREEFERILAVCDLPYSLTWADATYE+CNGEVGVQGEVEAY GYGE KAK+KKRK LRT EQFWAAFGA LVSAGDDCDDLLCG
Sbjct: 3419 KTRRAGDPPVSREEFERILAVCDLPYSLTWADATYELCNGEVGVQGEVEAYGGYGEGKAKEKKRKVLRTSEQFWAAFGAALVSAGDDCDDLLCG 3512
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1280.2315.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK07_ECTSI7.390e-5392.55Calmodulin-binding WW domain protein n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1280contigEcto-sp13_S_contig1280:3460..3744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score185.3
Seed ortholog evalue1.4e-44
Seed eggNOG ortholog2880.D7FK07
Model size286
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs28ZVB@1,2R6Q0@2759
Cds size285
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462685.013074-CDS-Ecto-sp13_S_contig1280:3459..37441681462685.013074-CDS-Ecto-sp13_S_contig1280:3459..3744Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1280 3460..3744 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1280.2315.1prot_Ecto-sp13_S_contig1280.2315.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1280 3460..3744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1280.2315.1

>prot_Ecto-sp13_S_contig1280.2315.1 ID=prot_Ecto-sp13_S_contig1280.2315.1|Name=mRNA_Ecto-sp13_S_contig1280.2315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=95bp
KTRRAGDPPVSREEFERILAVCDLPYSLTWADATYEMCNGEVGVQGEVEA
YSGYGEWKAKKKKRKALRTREQFWAAFGATLVSAGDDCDDLLCG*
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mRNA from alignment at Ecto-sp13_S_contig1280:3460..3744+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1280.2315.1 ID=mRNA_Ecto-sp13_S_contig1280.2315.1|Name=mRNA_Ecto-sp13_S_contig1280.2315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1280:3460..3744+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGAGGAGGGCCGGTGACCCCCCCGTATCCCGTGAAGAGTTCGAGCG
CATCCTGGCCGTTTGCGACCTGCCCTACAGCCTCACGTGGGCGGACGCTA
CCTACGAGATGTGCAACGGGGAGGTAGGGGTACAAGGAGAGGTGGAGGCC
TACAGCGGTTACGGAGAGTGGAAGGCCAAGAAGAAGAAGAGGAAGGCGCT
GCGAACGCGCGAGCAGTTTTGGGCTGCCTTCGGAGCGACACTGGTTTCGG
CCGGCGATGATTGCGACGATTTGCTGTGTGGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1280:3460..3744+

>mRNA_Ecto-sp13_S_contig1280.2315.1 ID=mRNA_Ecto-sp13_S_contig1280.2315.1|Name=mRNA_Ecto-sp13_S_contig1280.2315.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1280:3460..3744+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGACGAGGAGGGCCGGTGACCCCCCCGTATCCCGTGAAGAGTTCGAGCG
CATCCTGGCCGTTTGCGACCTGCCCTACAGCCTCACGTGGGCGGACGCTA
CCTACGAGATGTGCAACGGGGAGGTAGGGGTACAAGGAGAGGTGGAGGCC
TACAGCGGTTACGGAGAGTGGAAGGCCAAGAAGAAGAAGAGGAAGGCGCT
GCGAACGCGCGAGCAGTTTTGGGCTGCCTTCGGAGCGACACTGGTTTCGG
CCGGCGATGATTGCGACGATTTGCTGTGTGGGTAA
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