mRNA_Ecto-sp13_S_contig12761.2290.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12761.2290.1
Unique NamemRNA_Ecto-sp13_S_contig12761.2290.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12761.2290.1 vs. uniprot
Match: D7FP54_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FP54_ECTSI)

HSP 1 Score: 223 bits (568), Expect = 1.810e-71
Identity = 133/146 (91.10%), Postives = 134/146 (91.78%), Query Frame = 1 
Query:    1 MMTMSMSAHKKIMLVVVVFLVGKAESFVHVASCSSRGEAGTTAMAATSSPVGAAGEGARLTRAEAIRRAVAGSQALAAAGVLIGGSARALAEEEMKDEVQQFAELRGEVEKKGREAAMKENLALLSEATAGLKTLDVFIGEKDYKG 438
            MMTMSMSA K IMLVVVVFL GKAESFVHVASC SR EA TTAMAA SSPVG AGEGA LTRAEAIRR VAGSQALAAAGVLIGGSARALAEEEMKDEVQQFAELRG+VEKKGRE A KENLALLSEATAGLKTLDVFIGEKDYKG
Sbjct:    1 MMTMSMSAAKNIMLVVVVFLAGKAESFVHVASCWSRAEAATTAMAAASSPVGGAGEGAGLTRAEAIRRVVAGSQALAAAGVLIGGSARALAEEEMKDEVQQFAELRGKVEKKGREEATKENLALLSEATAGLKTLDVFIGEKDYKG 146
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12761.2290.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FP54_ECTSI1.810e-7191.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12761contigEcto-sp13_S_contig12761:2888..4942 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size438
Hectar predicted targeting categorysignal peptide
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_002550.1
Cds size438
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462682.7840827-CDS-Ecto-sp13_S_contig12761:2887..32381681462682.7840827-CDS-Ecto-sp13_S_contig12761:2887..3238Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12761 2888..3238 +
1681462682.7930343-CDS-Ecto-sp13_S_contig12761:4855..49421681462682.7930343-CDS-Ecto-sp13_S_contig12761:4855..4942Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12761 4856..4942 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12761.2290.1prot_Ecto-sp13_S_contig12761.2290.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12761 2888..4942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12761.2290.1

>prot_Ecto-sp13_S_contig12761.2290.1 ID=prot_Ecto-sp13_S_contig12761.2290.1|Name=mRNA_Ecto-sp13_S_contig12761.2290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=146bp
MMTMSMSAHKKIMLVVVVFLVGKAESFVHVASCSSRGEAGTTAMAATSSP
VGAAGEGARLTRAEAIRRAVAGSQALAAAGVLIGGSARALAEEEMKDEVQ
QFAELRGEVEKKGREAAMKENLALLSEATAGLKTLDVFIGEKDYKG
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mRNA from alignment at Ecto-sp13_S_contig12761:2888..4942+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12761.2290.1 ID=mRNA_Ecto-sp13_S_contig12761.2290.1|Name=mRNA_Ecto-sp13_S_contig12761.2290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2055bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12761:2888..4942+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACGATGAGCATGTCCGCTCACAAGAAGATCATGTTGGTTGTCGT
TGTGTTCCTGGTAGGCAAAGCGGAATCGTTTGTGCACGTCGCATCATGCT
CGAGCCGAGGAGAAGCAGGAACGACAGCTATGGCTGCTACATCATCACCA
GTCGGGGCAGCAGGAGAAGGGGCAAGGCTGACGCGGGCCGAGGCTATTCG
ACGCGCAGTCGCAGGGTCCCAAGCCCTAGCTGCTGCAGGGGTGCTGATCG
GAGGATCGGCCCGAGCGCTGGCCGAGGAAGAGATGAAGGACGAGGTGCAG
CAGTTCGCCGAGCTGCGTGGGGAGGTGGAGAAGAAGGGACGGGAAGCGGC
GGTGAGGTTAAGAATTGTCCAGCTTCTGCCGTACCTGACTACACGAAAAA
TCTCTGTTTCTTGTATACATGGACTGTGTCCAATTGTACATGCAAATTTG
GCCGCGTGTACATGAACAGCAATCTACAATCCGAAAGAAATGCCCCACTA
TGAATCGAATCCAAGCTCGATCTATTCAGGTAGCAGAGGCGTTATGTCTA
GAATGAAGAGAGCAACTATGAGAAGTCTTCGTGCCAAGCTCCACCCCGAT
GACTAGGGTTTTATTGTACCACGGTTCTTGTTGAAGCTCGAACTTGGATA
GTCGCCCCTAAGGGGGTGTGCTATCTTACGCAATAGGCCACGGTGGCTTT
TTTTGCAGACCAAGCTACGTATTGGGGTAGGTCGTAAAACAACGTCTCCC
CTGGAGAGTAACAAGCTGGGGGTCCAACTCACCCTCATGTTTTTTACATG
ATTGCAAGTTTGCGTGTTCATGAGTATCGACGTAGGGCATGAACTCTCAG
AACATCGGTGAGGCATCAACTACAATTGTACAACAAGCAGTTCGAACACA
GAAATCAAACTAACAATGAAGGCTGGGTGTGTTTCACGCACACAGCAGTA
GCTCGTGGATATGCTAATCGCACCTGTGCGAAGTTGTTCGGGAATTCCAC
CTGCCCCAGACGACGAAACCTGGTGGTGCGACAAAGGCGTAAATCCTAGG
ATGCGTCGTATACCGTAGACGACACAAGGCAACACTCCCCCTGGACCGAT
TTCCAAAGCTCAATTTCTCAACAGCAGAAAGAGTCACAGCGCCGAAACCA
GCGGCGTTGAAGCTGTCTCGTCGAGGGCTCTCTGAAATATGTCGTTTCGC
ATGTTAATCATCTTCGCCGTTGCGCAGTCGGGCTTTGACAATCGACCCAG
GGGGTGTGTTGTCTTGTGTCGTCTACGGTGCGACCCCTCTCCCGTCCAGC
GTCGTCGAGGGAGTCGCTCCCTCCCGATGTGGCAAACTGTGAAACGCCGA
GAATGGAAATGGCTGTTAGGGAGGCGACGCAGACATTCCGGCAGAACATC
ACTTCGTTGACCAATTAACTTGCAGATACTAATTTCGTGGCGTGCGGTTG
GTCTCTGTTGTGTCCGATGGCCGTGCCCGCGAAGTACGGTCCTTAAAAGT
TTAATCCACTAAAAAATATCGCACGTATTATACATAGTTGTCGTGCCTGC
TTGCTGCTGCTGCGTGGCTGTGGCTGCTTTTAGTTCCCGCATGCGGGACT
CTTCGATCGCGCGGTTGGGTATGCCAAGCGGCCCCCACCGGCCTGCACCG
CTAACACCGCACACCCTTTTACCAAACCCAATTTTTGCTCGCGCGAAACT
TGTTTCCACACGACAACCCACTAACCTTTATCAGTCAAGGTATACGCACG
CATACATACACTCGAGGGCAAACGTCGAGGGGGGACTTAACCTTGCCAAC
AAATAACCTCAAAGCCGCCAAACGTCGTATCGAAGAAAAGCGAATCAAAT
GTTGGACACATTGTACAGTTCTTCCTCATTTCCACTTTGTACCTCTCCCC
GAACCAACACAAAGCTCGTGAACTTTTAGCTTCCTACCACATGCCTGTCG
TGTCCTCTTTTGACCCAGATGAAGGAAAACCTGGCCCTGCTGTCCGAAGC
AACAGCCGGCCTGAAGACTCTCGACGTCTTCATTGGGGAGAAAGACTACA
AGGGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12761:2888..4942+

>mRNA_Ecto-sp13_S_contig12761.2290.1 ID=mRNA_Ecto-sp13_S_contig12761.2290.1|Name=mRNA_Ecto-sp13_S_contig12761.2290.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=438bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12761:2888..4942+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATGACGATGAGCATGTCCGCTCACAAGAAGATCATGTTGGTTGTCGT
TGTGTTCCTGGTAGGCAAAGCGGAATCGTTTGTGCACGTCGCATCATGCT
CGAGCCGAGGAGAAGCAGGAACGACAGCTATGGCTGCTACATCATCACCA
GTCGGGGCAGCAGGAGAAGGGGCAAGGCTGACGCGGGCCGAGGCTATTCG
ACGCGCAGTCGCAGGGTCCCAAGCCCTAGCTGCTGCAGGGGTGCTGATCG
GAGGATCGGCCCGAGCGCTGGCCGAGGAAGAGATGAAGGACGAGGTGCAG
CAGTTCGCCGAGCTGCGTGGGGAGGTGGAGAAGAAGGGACGGGAAGCGGC
GATGAAGGAAAACCTGGCCCTGCTGTCCGAAGCAACAGCCGGCCTGAAGA
CTCTCGACGTCTTCATTGGGGAGAAAGACTACAAGGGG
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