mRNA_Ecto-sp13_S_contig12729.2260.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12729.2260.1
Unique NamemRNA_Ecto-sp13_S_contig12729.2260.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 8.590e-31
Identity = 60/76 (78.95%), Postives = 64/76 (84.21%), Query Frame = 1 
Query:   46 MPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL 273
            M YLAEFV  DQYLFIA +SK FRR WGPRAT+TRPVVADTS+ QL YCLELGLP SIR   ICNAAARFG+LDLL
Sbjct:    1 MWYLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLL 76
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE)

HSP 1 Score: 118 bits (296), Expect = 7.810e-30
Identity = 58/76 (76.32%), Postives = 62/76 (81.58%), Query Frame = 1 
Query:   46 MPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL 273
            M Y AEFV  DQYLFIA + K FRR WGPRAT+TRPVVADTS+ QL YCLELGLP SIR   ICNAAARFG+LDLL
Sbjct:    1 MWYFAEFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLL 76
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.710e-28
Identity = 55/76 (72.37%), Postives = 63/76 (82.89%), Query Frame = 1 
Query:   46 MPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL 273
            M Y+AEFV  DQYLFI  +SK+FRR WGPRAT+TRPVVADTS+ QLR CL+L LP+ IR   ICNAAARFG+LDLL
Sbjct:    1 MSYIAEFVQ-DQYLFIGPVSKDFRRAWGPRATVTRPVVADTSVKQLRCCLKLDLPLRIRRTSICNAAARFGRLDLL 75
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: A0A6H5K6G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G3_9PHAE)

HSP 1 Score: 85.5 bits (210), Expect = 1.860e-17
Identity = 47/72 (65.28%), Postives = 53/72 (73.61%), Query Frame = 1 
Query:   46 MPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGK 261
            M YLAE V  +QYLFIA +S   RR WG RATIT+PVVADT+I QLR+CL+L    SIRH  I NAAA FGK
Sbjct:    1 MSYLAESVDHNQYLFIAPVSTASRRAWGSRATITQPVVADTTIMQLRHCLKL----SIRHTSIWNAAAHFGK 68
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 3.370e-11
Identity = 34/78 (43.59%), Postives = 48/78 (61.54%), Query Frame = 1 
Query:   40 DIMPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL 273
            D++ + +EFVH DQ+LF A +S+ +R  W  R T TR +  DTS  QLR+ ++ GL  S     +C A A  G+LDLL
Sbjct:   10 DVISHASEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGL--SPGGTAVCTAIASLGRLDLL 85
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BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 1.190e-9
Identity = 32/78 (41.03%), Postives = 44/78 (56.41%), Query Frame = 1 
Query:   40 DIMPYLAEFVHGDQYLFIALLSKNFRREWGPRATITRPVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL 273
            D++  +  FV   Q+LF A +S+ +R  WG R  +T  V  D+S+ QLRY  E GLP       +C A AR G L+LL
Sbjct:   62 DLLRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELL 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12729.2260.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D7G822_ECTSI8.590e-3178.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3L5_9PHAE7.810e-3076.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0L3_9PHAE1.710e-2872.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K6G3_9PHAE1.860e-1765.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDD9_ECTSI3.370e-1143.59Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KPZ6_9PHAE1.190e-941.03Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12729contigEcto-sp13_S_contig12729:3347..3619 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score63.9
Seed ortholog evalue4.4e-08
Seed eggNOG ortholog2880.D7FJY0
Model size273
KEGG koko:K06052
KEGG Pathwayko01522,ko04330,ko04371,ko04658,ko04668,ko05165,ko05200,ko05224,map01522,map04330,map04371,map04658,map04668,map05165,map05200,map05224
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs2AMK4@1,2RZCC@2759
Cds size273
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04090
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462680.5261316-CDS-Ecto-sp13_S_contig12729:3346..36191681462680.5261316-CDS-Ecto-sp13_S_contig12729:3346..3619Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12729 3347..3619 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12729.2260.1prot_Ecto-sp13_S_contig12729.2260.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12729 3347..3619 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12729.2260.1

>prot_Ecto-sp13_S_contig12729.2260.1 ID=prot_Ecto-sp13_S_contig12729.2260.1|Name=mRNA_Ecto-sp13_S_contig12729.2260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=91bp
GNAVAYRRVFNSKDIMPYLAEFVHGDQYLFIALLSKNFRREWGPRATITR
PVVADTSIGQLRYCLELGLPMSIRHKRICNAAARFGKLDLL
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mRNA from alignment at Ecto-sp13_S_contig12729:3347..3619+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12729.2260.1 ID=mRNA_Ecto-sp13_S_contig12729.2260.1|Name=mRNA_Ecto-sp13_S_contig12729.2260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12729:3347..3619+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAACGCCGTGGCATACAGGCGTGTCTTCAACAGCAAAGACATCATGCC
GTACCTTGCAGAGTTCGTGCATGGTGACCAGTACCTGTTCATCGCCCTGT
TGTCGAAGAACTTCAGGCGCGAGTGGGGCCCACGAGCAACGATTACCCGG
CCGGTGGTGGCCGACACGTCCATCGGGCAGCTCAGGTACTGCTTGGAGCT
CGGCCTGCCCATGAGCATCCGGCATAAACGCATCTGCAACGCCGCTGCCC
GCTTCGGCAAGCTGGACCTCCTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12729:3347..3619+

>mRNA_Ecto-sp13_S_contig12729.2260.1 ID=mRNA_Ecto-sp13_S_contig12729.2260.1|Name=mRNA_Ecto-sp13_S_contig12729.2260.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12729:3347..3619+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGAAACGCCGTGGCATACAGGCGTGTCTTCAACAGCAAAGACATCATGCC
GTACCTTGCAGAGTTCGTGCATGGTGACCAGTACCTGTTCATCGCCCTGT
TGTCGAAGAACTTCAGGCGCGAGTGGGGCCCACGAGCAACGATTACCCGG
CCGGTGGTGGCCGACACGTCCATCGGGCAGCTCAGGTACTGCTTGGAGCT
CGGCCTGCCCATGAGCATCCGGCATAAACGCATCTGCAACGCCGCTGCCC
GCTTCGGCAAGCTGGACCTCCTT
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