mRNA_Ecto-sp13_S_contig12706.2240.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig12706.2240.1
Unique Name	mRNA_Ecto-sp13_S_contig12706.2240.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: D7G3M9_ECTSI (NUC153 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3M9_ECTSI)

HSP 1 Score: 208 bits (530), Expect = 9.930e-62
Identity = 104/105 (99.05%), Postives = 105/105 (100.00%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF
Sbjct:   19 SGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 123

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A835Z278_9STRA (WD40-repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z278_9STRA)

HSP 1 Score: 154 bits (388), Expect = 2.220e-41
Identity = 75/105 (71.43%), Postives = 90/105 (85.71%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GKTLPQWL++K++R+LSKD  YRRRIELLQDF+FPTASQ + +SPD Q+VIV GTYPPQ+KV+EVA+LSMKFERHLD E V    L+ G+EKL FL ADRTLAF
Sbjct:   36 SGKTLPQWLNDKQKRALSKDDGYRRRIELLQDFEFPTASQTIKMSPDGQFVIVTGTYPPQVKVYEVAELSMKFERHLDAECVAMEVLSAGFEKLVFLQADRTLAF 140

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A699YNB4_HAELA (NUC153 domain-containing protein (Fragment) n=2 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699YNB4_HAELA)

HSP 1 Score: 132 bits (333), Expect = 3.420e-37
Identity = 61/105 (58.10%), Postives = 81/105 (77.14%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GK +PQWLSE K++SL K+ EYRRR+ELLQD  FP A Q++ V+PD QY+   G +PPQ KV+++A+L++KF+RHLD E VDF  L+E Y K AFL ADRT+ F
Sbjct:   18 SGKAVPQWLSESKKKSLKKNEEYRRRLELLQDLKFPAACQRIKVTPDQQYIFATGYHPPQAKVYDLANLALKFDRHLDSEVVDFQILSEDYSKAAFLCADRTVCF 122

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A7S4PLV0_GUITH (Hypothetical protein (Fragment) n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PLV0_GUITH)

HSP 1 Score: 133 bits (335), Expect = 2.880e-36
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GKTLPQWLSEKK++SL KD EY+ RIEL+QD +F  AS  + +S D +++   G YPPQ+KV+E+++LSMKFERH+DCE V F  L++ Y K+AFL ADRT+ F
Sbjct:   23 SGKTLPQWLSEKKKKSLRKDEEYKSRIELIQDLEFDVASSHLRLSKDGKFMAATGVYPPQVKVYELSELSMKFERHMDCEVVQFQILSDDYSKMAFLQADRTIEF 127

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A2D4BFA0_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BFA0_PYTIN)

HSP 1 Score: 137 bits (344), Expect = 2.750e-35
Identity = 65/105 (61.90%), Postives = 83/105 (79.05%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GKTLPQWL+EK +++LSKD +YRRR+ELLQDF FP+ SQ+V +SPD  Y+I  G YPP +KVF+V +LS+KFER LD E V F  L+  + KLAFL +DRTLAF
Sbjct: 2413 SGKTLPQWLAEKTKKALSKDEDYRRRVELLQDFHFPSGSQRVKMSPDGNYIIATGMYPPSVKVFDVRELSIKFERRLDAEVVQFEVLSADFGKLAFLQSDRTLAF 2517

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A024TJ26_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TJ26_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.330e-35
Identity = 65/105 (61.90%), Postives = 84/105 (80.00%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            AGKTLPQWL++K R++LS+D +YRRR+ELLQDF FP +SQ+V +SPD  YVI +GTYPP IKV++V DLS+KFER LD E V  + L+E + KLA L  DR++AF
Sbjct:   19 AGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIASGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAF 123

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: W4GCA3_9STRA (NUC153 domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GCA3_9STRA)

HSP 1 Score: 135 bits (341), Expect = 5.480e-35
Identity = 65/105 (61.90%), Postives = 84/105 (80.00%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            AGKTLPQW+++K RR+LS+D +Y+RR+ELLQDF FP +SQ+V +SPD  YVI AGTYPP IKV++V DLS+KFER LD E V  + L+E + KLA L  DR++AF
Sbjct:   19 AGKTLPQWIAQKTRRALSRDEDYQRRLELLQDFHFPVSSQRVTMSPDGHYVIAAGTYPPSIKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAF 123

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A485KJT6_9STRA (Aste57867_8214 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KJT6_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.410e-34
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            AGKTLPQWL++K R++LS+D +YRRR+ELLQDF FP +SQ+V +SPD  YVI  GTYPP +KV++V DLS+KFER LD E V  + L+E + KLA L  DR++AF
Sbjct:   20 AGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVTMSPDGHYVIATGTYPPSLKVYDVRDLSLKFERRLDSEVVRLICLSEDFGKLALLQLDRSIAF 124

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: A0A6G0X8Q3_9STRA (NUC153 domain-containing protein n=2 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8Q3_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.920e-34
Identity = 64/105 (60.95%), Postives = 83/105 (79.05%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            AGKTLPQWL++K R++LS+D +YRRR+ELLQDF FP +SQ+V +SPD  YVI +GTYPP +KV++V DLS+KFER LD E V    L+E + KLA L  DR++AF
Sbjct:   19 AGKTLPQWLAQKTRKALSRDEDYRRRLELLQDFHFPVSSQRVVMSPDGHYVIASGTYPPSLKVYDVRDLSLKFERRLDSEVVRLTCLSEDFGKLALLQLDRSIAF 123

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BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Match: L1JYY2_GUITC (NUC153 domain-containing protein (Fragment) n=2 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1JYY2_GUITC)

HSP 1 Score: 133 bits (335), Expect = 2.120e-34
Identity = 61/105 (58.10%), Postives = 82/105 (78.10%), Query Frame = 1

Query:    1 AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQYVIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLADRTLAF 315
            +GKTLPQWLSEKK++SL KD EY+ RIEL+QD +F  AS  + +S D +++   G YPPQ+KV+E+++LSMKFERH+DCE V F  L++ Y K+AFL ADRT+ F
Sbjct:   14 SGKTLPQWLSEKKKKSLRKDEEYKSRIELIQDLEFDVASSHLRLSKDGKFMAATGVYPPQVKVYELSELSMKFERHMDCEVVQFQILSDDYSKMAFLQADRTIEF 118

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig12706.2240.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G3M9_ECTSI	9.930e-62	99.05	NUC153 domain-containing protein n=2 Tax=Ectocarpu...	[more]
A0A835Z278_9STRA	2.220e-41	71.43	WD40-repeat-containing domain protein n=1 Tax=Trib...	[more]
A0A699YNB4_HAELA	3.420e-37	58.10	NUC153 domain-containing protein (Fragment) n=2 Ta...	[more]
A0A7S4PLV0_GUITH	2.880e-36	58.10	Hypothetical protein (Fragment) n=1 Tax=Guillardia...	[more]
A0A2D4BFA0_PYTIN	2.750e-35	61.90	Uncharacterized protein n=1 Tax=Pythium insidiosum...	[more]
A0A024TJ26_9STRA	5.330e-35	61.90	NUC153 domain-containing protein n=2 Tax=Aphanomyc...	[more]
W4GCA3_9STRA	5.480e-35	61.90	NUC153 domain-containing protein n=5 Tax=Aphanomyc...	[more]
A0A485KJT6_9STRA	1.410e-34	60.95	Aste57867_8214 protein n=1 Tax=Aphanomyces stellat...	[more]
A0A6G0X8Q3_9STRA	1.920e-34	60.95	NUC153 domain-containing protein n=2 Tax=Aphanomyc...	[more]
L1JYY2_GUITC	2.120e-34	58.10	NUC153 domain-containing protein (Fragment) n=2 Ta...	[more]

Pages

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig12706	contig	Ecto-sp13_S_contig12706:4168..4962 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	212.6
Seed ortholog evalue	8.8e-53
Seed eggNOG ortholog	2880.D7G3M9
Preferred name	NOL10
Model size	315
KEGG ko	ko:K14788
Hectar predicted targeting category	other localisation
GOs	GO:0000462,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0006139,GO:0006364,GO:0006396,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016072,GO:0022613,GO:0030490,GO:0030684,GO:0030686,GO:0031974,GO:0031981,GO:0032040,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0042254,GO:0042274,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044085,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0071840,GO:0090304,GO:1901360,GO:1990904
Exons	2
EggNOG free text desc.	rRNA processing
EggNOG OGs	KOG2321@1,KOG2321@2759
Cds size	315
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko03009

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462678.9131567-CDS-Ecto-sp13_S_contig12706:4167..4354	1681462678.9131567-CDS-Ecto-sp13_S_contig12706:4167..4354	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12706 4168..4354 +
1681462678.9246724-CDS-Ecto-sp13_S_contig12706:4834..4962	1681462678.9246724-CDS-Ecto-sp13_S_contig12706:4834..4962	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig12706 4835..4962 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig12706.2240.1	prot_Ecto-sp13_S_contig12706.2240.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig12706 4168..4962 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig12706:4168..4962+
coding sequence from alignment at Ecto-sp13_S_contig12706:4168..4962+

protein sequence of mRNA_Ecto-sp13_S_contig12706.2240.1

>prot_Ecto-sp13_S_contig12706.2240.1 ID=prot_Ecto-sp13_S_contig12706.2240.1|Name=mRNA_Ecto-sp13_S_contig12706.2240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
AGKTLPQWLSEKKRRSLSKDVEYRRRIELLQDFDFPTASQKVCVSPDAQY
VIVAGTYPPQIKVFEVADLSMKFERHLDCEAVDFMPLAEGYEKLAFLLAD
RTLAF

mRNA from alignment at Ecto-sp13_S_contig12706:4168..4962+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig12706.2240.1 ID=mRNA_Ecto-sp13_S_contig12706.2240.1|Name=mRNA_Ecto-sp13_S_contig12706.2240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=795bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12706:4168..4962+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGGAAAACCCTGCCGCAATGGCTCTCCGAGAAGAAGCGGCGCTCCCT
GTCGAAGGACGTAGAGTACCGAAGGAGGATCGAGCTGCTGCAGGACTTCG
ACTTCCCGACGGCCTCTCAGAAGGTCTGCGTGTCGCCGGACGCGCAGTAC
GTTATCGTCGCGGGCACGTACCCGCCGCAGATCAAGGGTGAGCCGCCCGG
TGATTCCGGCTAGTCGAAGAAGCCAGGCTGCATGGTCTCGTACGAGTTGG
ATGGTCGGTCGTCTAGGTTTTGTGTTCTGTGTTTAACGAGTACGCGACTA
CACCCGTTTTTTTTTATGCAGCCGATATTGTGGCACCACTTCAGCTTTAA
AGCGGCTGTTGTTTTTTTTAGCGCTGTGGTTTTCCGATTTCAGCATTTCT
CCGCCTGGTTTAGACGTTGGTGGTTTTCAAAGACGAACAAATTAAAGGGC
ACGCACGTATATTTCTAATATAGATCAACTCATGCCTCCTGCTTAGAGGG
TTGCCTTAATTCGCTGTCGCTTGTCATCGTCAGGATTTATAAAGCTGTTC
CAGGCAACTTTTCGCGTCGGATATGGTTCCCTGCTCTGTTCAGTGTGTGT
GTGTTTGCCTCGACCGTCCTTTTGCCAAGCATCCTCCCTCCCGTCCTCCG
CCTTCCACACCCAACAGTATTCGAGGTGGCCGACCTGTCGATGAAATTCG
AGCGCCACCTCGACTGCGAAGCGGTAGACTTCATGCCGCTGGCCGAGGGC
TACGAGAAGCTCGCGTTCCTGTTGGCCGACAGGACGCTGGCATTT

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12706:4168..4962+

>mRNA_Ecto-sp13_S_contig12706.2240.1 ID=mRNA_Ecto-sp13_S_contig12706.2240.1|Name=mRNA_Ecto-sp13_S_contig12706.2240.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12706:4168..4962+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGGGAAAACCCTGCCGCAATGGCTCTCCGAGAAGAAGCGGCGCTCCCT
GTCGAAGGACGTAGAGTACCGAAGGAGGATCGAGCTGCTGCAGGACTTCG
ACTTCCCGACGGCCTCTCAGAAGGTCTGCGTGTCGCCGGACGCGCAGTAC
GTTATCGTCGCGGGCACGTACCCGCCGCAGATCAAGGTATTCGAGGTGGC
CGACCTGTCGATGAAATTCGAGCGCCACCTCGACTGCGAAGCGGTAGACT
TCATGCCGCTGGCCGAGGGCTACGAGAAGCTCGCGTTCCTGTTGGCCGAC
AGGACGCTGGCATTT