|
|
Homology
BLAST of mRNA_Ecto-sp13_S_contig12654.2197.1 vs. uniprot
Match: A0A6H5JH37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH37_9PHAE) HSP 1 Score: 143 bits (360), Expect = 1.630e-36 Identity = 76/86 (88.37%), Postives = 78/86 (90.70%), Query Frame = 3
Query: 921 QAGYRCLRLEHSRNDSLRSCAPFLSHKAAAAAEAAAEARERCPQAVWEVRRGSTAGAVRGVPGPTNGSRARFRRRSLEGVRGVSMA 1178
+ GYRC RLEHSRN SLRSCAPFLSHKAAAAAEAAAEARE CPQA WEVRRGSTAGA RGVPGPT+GSRARFRRR LE VRGVSMA
Sbjct: 18 EVGYRCPRLEHSRNVSLRSCAPFLSHKAAAAAEAAAEAREGCPQAAWEVRRGSTAGAARGVPGPTSGSRARFRRRFLEVVRGVSMA 103
BLAST of mRNA_Ecto-sp13_S_contig12654.2197.1 vs. uniprot
Match: D7FIP9_ECTSI (HSF_DOMAIN domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIP9_ECTSI) HSP 1 Score: 139 bits (349), Expect = 2.440e-32 Identity = 64/73 (87.67%), Postives = 69/73 (94.52%), Query Frame = 2
Query: 2735 VPTKFLTILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFADPKVAGFLRQLAFYGFKKVGVGMRER 2953
VPTKFL+ILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFF DPKV+GFLRQLAFYGFKK G ++E+
Sbjct: 66 VPTKFLSILYDMLVEGNPQVWWERETGSVVIEDPQLFEAETMPRFFTDPKVSGFLRQLAFYGFKKPGRSVKEQ 138
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
| Stop | 0 |
| Start | 1 |
| Model size | 2953 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | Heat Shock transcription factor |
| Ec32 ortholog | Ec-27_000590.1 |
| Cds size | 2397 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462675.7704446-CDS-Ecto-sp13_S_contig12654:294..393 | 1681462675.7704446-CDS-Ecto-sp13_S_contig12654:294..393 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12654 295..393 - |
| 1681462675.7805905-CDS-Ecto-sp13_S_contig12654:948..1429 | 1681462675.7805905-CDS-Ecto-sp13_S_contig12654:948..1429 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12654 949..1429 - |
| 1681462675.789283-CDS-Ecto-sp13_S_contig12654:1856..3619 | 1681462675.789283-CDS-Ecto-sp13_S_contig12654:1856..3619 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12654 1857..3619 - |
| 1681462675.797907-CDS-Ecto-sp13_S_contig12654:4369..4423 | 1681462675.797907-CDS-Ecto-sp13_S_contig12654:4369..4423 | Ectocarpus species13 EcNAP12_S_4_19m | CDS | Ecto-sp13_S_contig12654 4370..4423 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
| 1681462675.806507-UTR-Ecto-sp13_S_contig12654:4423..4979 | 1681462675.806507-UTR-Ecto-sp13_S_contig12654:4423..4979 | Ectocarpus species13 EcNAP12_S_4_19m | UTR | Ecto-sp13_S_contig12654 4424..4979 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12654.2197.1 >prot_Ecto-sp13_S_contig12654.2197.1 ID=prot_Ecto-sp13_S_contig12654.2197.1|Name=mRNA_Ecto-sp13_S_contig12654.2197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=799bp
MTNEGVGSTQLSSFTNPEVRQQSSSLALLGPPPPEFHPEQQQQQQQQQHF QYPGSLGQQQQHQHQHQRQLPESQALPSLRSSINFSGTRSRDHHRQRHHH QHIGPNNPAATQQQPQRSPGRTGGIPVPAVGALPQRQSPQLRPLSFPQSG GGSGSSSGSPRALSPSGMGGAAGFYSRGGERGTGTHQRLARTLPSPFSGG GSRSVDGLDIGPSSTQQQQQQQFSVAALPNAAWPPSLLPGYGTMSMPPSQ AQDSAPPHRQPQSPAAAAAGGGWGVASPPTGMAARRGGGSEGDRAASPNS GMGGTSTRPASPGSWVAPQAQRSGSGGGGIAGGSSAMGRTGSGQKKPRIV QQQQQQHQQKQQQPQAPFARVTDGSGESYGGGGLPQRLLPQVAHHSPHAQ QQQQQQQQQQWGMGATTNVLARSVTAGGPWPVNRSHGGGGGGGGGGTARA GLQQTPTYGWSTQDSSSRLPQPSPDVGAMMARAIGGGAQRQQKAGMNLVG GGATVGPAALRGGGVFAGVGAAASSSGPVSLLSAPVGDFVKQPHRVGKRP PQQQQRGRGLVLAPRQELAGQQGPPSAAAAAAVAAINAAAMGDAGSREWS ALRTTIPFYQGMLKIPQQGQQPKMLPQQQQQQQQQQHVAAPASPPLPVTV SPLPSPRFTPIAPMIPKQQPAAMPPPTPPPPSPPPTSAVPKGVSTGGKGE GGKAGGAATGGNGGGGGAGRGPGRRGVPTKFLTILYDMLVEGNPQVWWER ETGSVVIEDPQLFEAETMPRFFADPKVAGFLRQLAFYGFKKVGVGMRER back to topmRNA from alignment at Ecto-sp13_S_contig12654:295..4979- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_Ecto-sp13_S_contig12654.2197.1 ID=mRNA_Ecto-sp13_S_contig12654.2197.1|Name=mRNA_Ecto-sp13_S_contig12654.2197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4685bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12654:295..4979- (Ectocarpus species13 EcNAP12_S_4_19m) TAGTGAGTGGTACCAATTGGCTCACCCTGGTACATGGTAGCCGATCAACC
CAGATTGTCGCGTGTTCGTGCGTGAAGGTGTGTGGTGTTGCGTACCGAGC
GAGGAGGAGGTTGTGTCATGATGGTCCACCCGCTTGCTTTCGGTTTTGTA
GGGTAGGCGGAAAGCCACGGCTCGTTCTGGTTGCGACCTTCGTGGCCCAA
ATTATGAAGAACCAAGTTTGCCTGCTGTTTGGCTTCCAACTTTTCTAGTC
TCGAAGATACCCACAGTAGGACCTACACCAGTAGAATTCATCCACCCTTT
CGCGGCCGATCCTTCCCAATCATGCCCCGATACCGACGGTGTTCACCCCG
GCAACCAACAGTGCCGTTTTCTGTGTCATCATTGTCATTGCCGCCGGACA
GGGATTGATTGCATCCTGCTGTCTCGCGATCAGACTCGTGTAGAGCACGA
CAGCAGGTGCAAACCGACGACAGGGACCCGCGACCAATTGCAGGCGGACA
GCAAGCAGTGCACCGTTTCCCCTCCCCGTCGGCTCCTAGCAAAGCCCCGG
CCGGGCATGACGAATGAGGGCGTGGGCAGCACCCAGCTTTCATCCTTCAC
AAACCCCGAGGTAAACGTCGGTACATCATTGGTATGAAGTTCAAGGCTTG
GGTATACTCAACAATCAGCTTGGGGGGCGCGTGTCTTTGCCGCCTGTCAC
AGCAGCACTTAGACGTAAGTGGCTGAAGCGTCGCGGCCGCTCTTTTCTTT
GTACTGCTGTACAGAAAGCCAACGAAACTAAAGGCTTCGTGGGAGTTCCG
CGACAAGATTGCCCTCGGCGGTCACACGGCGAGAACGTTGTATTTGGTGG
GTTTGCTTTGCCGGATGCCGAGGATGGCAGATGGGTGGGATACCGATTGA
GAGAGGGGCGTTTTATGCTTGATTGGATGCGTCTTGCCGCGTATTTTGCG
TCGCAGATGTTTTCGTCAGACGGGAGCCGAATCACTTGAGCAGTATTCTT
CTCGGTATTGTATGCAGAGCATTTGGCACCCATGTCTTCGTTCGCGGTAT
CGCAGCAGTATGTTGTTTCCTATCTACGTGTATATTTGCTTGTGTCTCTT
TTTGGACCTTTGAGGGTTTGTTTCCCTTTGTCGGCGTGAGTACGTGGTGT
GTCTAAAAAGGTTTGACAAGGTCGTTCCAATGCACGATCCAGCCCATCAA
ACCCAACCCACACCTCTGTCTGACCTATTCCTCGATCTAGACCTAGACCT
TCGGCTGCTTAAGTCGGGGGCAGCGTCGTGACCCCTCTCATCTGCCGCCG
TTCCGCCGTCCGATCGTACTCTTGCTACCTTTATCCTCTACCAATGTTTT
GTTGTCCTAGGTGAGGCAGCAGTCCAGTTCGTTGGCCTTGCTGGGACCCC
CTCCTCCCGAGTTTCACCCAGAACAGCAGCAGCAGCAGCAGCAGCAGCAG
CACTTCCAGTATCCCGGTAGTTTGGGGCAACAACAGCAGCATCAGCACCA
GCACCAGCGCCAGCTCCCCGAGAGCCAAGCTCTTCCCTCCCTCCGTTCCT
CCATTAACTTCTCCGGCACCAGAAGCCGCGACCACCACCGCCAGCGACAC
CACCACCAGCACATCGGCCCCAACAACCCGGCAGCAACACAGCAGCAACC
GCAACGTTCTCCGGGACGAACAGGCGGGATACCGGTGCCTGCGGTTGGAG
CACTCCCGCAACGACAGTCTCCGCAGTTGCGCCCCCTTTCTTTCCCACAA
AGCGGCGGCGGCAGCGGAAGCAGCAGCGGAAGCCCGAGAGCGTTGTCCCC
AAGCGGTATGGGAGGTGCGGCGGGGTTCTACAGCAGGGGCGGTGAGAGGG
GTACCGGGACCCACCAACGGCTCGCGCGCACGCTTCCGTCGCCGTTCTCT
GGAGGGGGTTCGAGGAGTGTCGATGGCCTAGATATCGGACCGTCGTCTAC
CCAGCAGCAGCAGCAGCAGCAGTTTTCTGTCGCTGCCCTTCCCAACGCCG
CTTGGCCTCCTTCACTGCTTCCGGGATACGGCACGATGTCGATGCCGCCT
TCGCAGGCGCAGGATTCGGCGCCGCCGCACCGGCAGCCGCAATCCCCGGC
GGCGGCGGCGGCGGGCGGGGGGTGGGGGGTGGCCTCCCCGCCCACCGGCA
TGGCGGCACGCCGAGGAGGAGGATCCGAGGGCGACCGCGCGGCGTCTCCC
AATAGCGGGATGGGAGGAACGTCGACGCGACCAGCGAGTCCCGGGAGCTG
GGTTGCTCCGCAGGCGCAAAGGAGTGGTAGCGGCGGGGGCGGTATTGCTG
GCGGCAGCTCTGCGATGGGCAGAACCGGATCGGGTCAGAAAAAACCGCGC
ATCGTGCAGCAGCAACAGCAGCAGCATCAACAAAAGCAGCAGCAGCCGCA
GGCACCCTTTGCTCGCGTAACAGACGGAAGTGGTGAGAGCTACGGCGGGG
GGGGACTACCGCAGCGGCTGCTGCCTCAGGTTGCGCACCATTCCCCCCAC
GCTCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGGTATGGGTGC
AACGACGAACGTGCTAGCGAGGTCCGTCACGGCGGGAGGGCCGTGGCCGG
TTAACCGCTCCCATGGGGGCGGCGGCGGCGGCGGCGGAGGCGGCACCGCT
CGTGCGGGTCTTCAACAAACGCCAACATACGGTTGGTCAACCCAAGATTC
AAGCTCCAGGCTGCCACAGCCGTCACCGGACGTGGGGGCCATGATGGCGC
GTGCGATCGGTGGCGGTGCGCAGAGGCAGCAAAAGGCCGGCATGAACCTC
GTGGGAGGGGGAGCGACGGTCGGCCCCGCGGCGTTGAGGGGCGGCGGGGT
TTTTGCTGGCGTCGGCGCCGCTGCCAGCAGCAGCGGACCGGTCTCGCTCC
TGAGTGCACCGGTTGGCGATTTCGTAAAGCAGCCTCATCGCGTAGGGAAA
AGACCGCCGCAGCAGCAGCAGCGGGGACGGGGGTTGGTGTTGGCTCCTCG
GCAAGAGCTTGCGGGGCAGCAGGGGCCTCCGTCTGCGGCTGCGGCGGCTG
CGGTGGCCGCCATCAACGCGGCGGCTATGGGGGACGCGGGCTCGCGTGAG
TGGAGCGCGCTCCGCACCACGATGTGAGAATTTTTCAGAAATATTGCAAC
GCTTAGCAGAACGGGTGGTTTGAGTGAGATGTGCATGGGAGGGAGCCCGC
GACAACAATCCGCTGATTTCTGGCAGGGACACCTGCTTCCTCTCGTGTGG
TAGCGCCCCCGGATGCTTTACTGGTGATTTTAATGCTGCAAGTGGGCTTA
CGTGTTTTGAAGCCCGTCCGAAACACTGATGTCGTGTCGAAGAGGGGGTC
GGGAAACGTGTGGATCAATCCCAACCGAGGTTTCGTTGTTCCTCACCTGT
GATACGTCTCGCCAAGACCCGATCGTTAGCTCTACGGCGTTTGCAAATTC
TCTCTCTTTCTCTCTCTCCATGAAGTCCTTGCCTACTTTTTGTTACTATC
TCATCATCCTACCCCCTTCCCCTGTCCCCGCCCGCGTTTCTCCCCTTAAG
CCCCTTCTACCAAGGGATGTTGAAAATCCCACAACAAGGGCAACAACCGA
AAATGCTGCCGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCACGTTGCG
GCCCCTGCTTCCCCCCCCCTGCCGGTGACCGTGTCACCACTGCCCTCTCC
TCGGTTCACACCGATCGCCCCAATGATCCCCAAGCAACAACCGGCCGCCA
TGCCGCCGCCGACTCCGCCACCGCCGTCGCCGCCGCCAACATCGGCCGTT
CCCAAAGGAGTCAGCACCGGCGGCAAGGGGGAAGGAGGGAAGGCCGGGGG
GGCGGCTACGGGGGGTAACGGCGGTGGGGGGGGCGCTGGTAGGGGCCCGG
GACGAAGGGGCGTGCCGACCAAGTTCCTGACGATTTTGTACGACATGCTC
GTGGAGGGGAACCCACAGGTTTGGTGGGAGCGGGAGACCGGGAGCGTGGT
CATCGAAGACCCTCAGCTGTTTGAGGCAGAGGTGAGGAGCTTCAAGAATG
ATTCAGCTTGGAATAGAAAGGAGCAGGCACACCTTGTTCCAGCCCGGACG
GTGGTGGCTCAAGCGGAACCTTGTCATCTTGGTCTGATTTGGGCGGTAAC
GGTTACGAGGCCGTGGTGGTGGACAACCCGGGGGTGTTGGTCTTGGTCTT
GGTGGAGGAAGCGGTGGAATATTCGTATGAAGAAATGGGTGTGGAACACA
AGTTGTCAAAAATGTTGGATTCGATCCCGATAGTCGCTACTACTCGTGCT
TGCGTGTGGAGTGGAAGTTGTAGCAGACTCTCTCTCTCACCCGTTGGACT
GCCCTGGTTGCTGTGTGTGGGAGTTGGTGTTGCCGAACTACTCTGTCACA
CCGAGAAAATATCGGCAGTTTTATCCCCGGGCATCCCCATGCCGGAGTCC
TGAGGATGTCGGCTCCGACTCCCGCGAGCTACGCTTGTAAAGTCGCACAC
GGATAATCGGCGTGAAATCCCCTTTGCTTGTTTGCCACCCTCGGCCTTTT
TTCCCCTTCTTTTTTTTCGTTCGTCGCCGTGATCAGACGATGCCACGTTT
TTTCGCGGACCCCAAAGTTGCGGGGTTTCTCCGCCAGCTGGCCTTTTACG
GTTTTAAGAAGGTGGGTGTGGGGATGAGAGAGAGG back to topCoding sequence (CDS) from alignment at Ecto-sp13_S_contig12654:295..4979- >mRNA_Ecto-sp13_S_contig12654.2197.1 ID=mRNA_Ecto-sp13_S_contig12654.2197.1|Name=mRNA_Ecto-sp13_S_contig12654.2197.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2397bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12654:295..4979- (Ectocarpus species13 EcNAP12_S_4_19m) ATGACGAATGAGGGCGTGGGCAGCACCCAGCTTTCATCCTTCACAAACCC CGAGGTGAGGCAGCAGTCCAGTTCGTTGGCCTTGCTGGGACCCCCTCCTC CCGAGTTTCACCCAGAACAGCAGCAGCAGCAGCAGCAGCAGCAGCACTTC CAGTATCCCGGTAGTTTGGGGCAACAACAGCAGCATCAGCACCAGCACCA GCGCCAGCTCCCCGAGAGCCAAGCTCTTCCCTCCCTCCGTTCCTCCATTA ACTTCTCCGGCACCAGAAGCCGCGACCACCACCGCCAGCGACACCACCAC CAGCACATCGGCCCCAACAACCCGGCAGCAACACAGCAGCAACCGCAACG TTCTCCGGGACGAACAGGCGGGATACCGGTGCCTGCGGTTGGAGCACTCC CGCAACGACAGTCTCCGCAGTTGCGCCCCCTTTCTTTCCCACAAAGCGGC GGCGGCAGCGGAAGCAGCAGCGGAAGCCCGAGAGCGTTGTCCCCAAGCGG TATGGGAGGTGCGGCGGGGTTCTACAGCAGGGGCGGTGAGAGGGGTACCG GGACCCACCAACGGCTCGCGCGCACGCTTCCGTCGCCGTTCTCTGGAGGG GGTTCGAGGAGTGTCGATGGCCTAGATATCGGACCGTCGTCTACCCAGCA GCAGCAGCAGCAGCAGTTTTCTGTCGCTGCCCTTCCCAACGCCGCTTGGC CTCCTTCACTGCTTCCGGGATACGGCACGATGTCGATGCCGCCTTCGCAG GCGCAGGATTCGGCGCCGCCGCACCGGCAGCCGCAATCCCCGGCGGCGGC GGCGGCGGGCGGGGGGTGGGGGGTGGCCTCCCCGCCCACCGGCATGGCGG CACGCCGAGGAGGAGGATCCGAGGGCGACCGCGCGGCGTCTCCCAATAGC GGGATGGGAGGAACGTCGACGCGACCAGCGAGTCCCGGGAGCTGGGTTGC TCCGCAGGCGCAAAGGAGTGGTAGCGGCGGGGGCGGTATTGCTGGCGGCA GCTCTGCGATGGGCAGAACCGGATCGGGTCAGAAAAAACCGCGCATCGTG CAGCAGCAACAGCAGCAGCATCAACAAAAGCAGCAGCAGCCGCAGGCACC CTTTGCTCGCGTAACAGACGGAAGTGGTGAGAGCTACGGCGGGGGGGGAC TACCGCAGCGGCTGCTGCCTCAGGTTGCGCACCATTCCCCCCACGCTCAG CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTGGGGTATGGGTGCAACGAC GAACGTGCTAGCGAGGTCCGTCACGGCGGGAGGGCCGTGGCCGGTTAACC GCTCCCATGGGGGCGGCGGCGGCGGCGGCGGAGGCGGCACCGCTCGTGCG GGTCTTCAACAAACGCCAACATACGGTTGGTCAACCCAAGATTCAAGCTC CAGGCTGCCACAGCCGTCACCGGACGTGGGGGCCATGATGGCGCGTGCGA TCGGTGGCGGTGCGCAGAGGCAGCAAAAGGCCGGCATGAACCTCGTGGGA GGGGGAGCGACGGTCGGCCCCGCGGCGTTGAGGGGCGGCGGGGTTTTTGC TGGCGTCGGCGCCGCTGCCAGCAGCAGCGGACCGGTCTCGCTCCTGAGTG CACCGGTTGGCGATTTCGTAAAGCAGCCTCATCGCGTAGGGAAAAGACCG CCGCAGCAGCAGCAGCGGGGACGGGGGTTGGTGTTGGCTCCTCGGCAAGA GCTTGCGGGGCAGCAGGGGCCTCCGTCTGCGGCTGCGGCGGCTGCGGTGG CCGCCATCAACGCGGCGGCTATGGGGGACGCGGGCTCGCGTGAGTGGAGC GCGCTCCGCACCACGATCCCCTTCTACCAAGGGATGTTGAAAATCCCACA ACAAGGGCAACAACCGAAAATGCTGCCGCAGCAGCAACAGCAGCAGCAGC AGCAGCAGCACGTTGCGGCCCCTGCTTCCCCCCCCCTGCCGGTGACCGTG TCACCACTGCCCTCTCCTCGGTTCACACCGATCGCCCCAATGATCCCCAA GCAACAACCGGCCGCCATGCCGCCGCCGACTCCGCCACCGCCGTCGCCGC CGCCAACATCGGCCGTTCCCAAAGGAGTCAGCACCGGCGGCAAGGGGGAA GGAGGGAAGGCCGGGGGGGCGGCTACGGGGGGTAACGGCGGTGGGGGGGG CGCTGGTAGGGGCCCGGGACGAAGGGGCGTGCCGACCAAGTTCCTGACGA TTTTGTACGACATGCTCGTGGAGGGGAACCCACAGGTTTGGTGGGAGCGG GAGACCGGGAGCGTGGTCATCGAAGACCCTCAGCTGTTTGAGGCAGAGAC GATGCCACGTTTTTTCGCGGACCCCAAAGTTGCGGGGTTTCTCCGCCAGC TGGCCTTTTACGGTTTTAAGAAGGTGGGTGTGGGGATGAGAGAGAGG back to top
|