mRNA_Ecto-sp13_S_contig12652.2196.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12652.2196.1
Unique NamemRNA_Ecto-sp13_S_contig12652.2196.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 1085 bits (2806), Expect = 0.000e+0
Identity = 545/582 (93.64%), Postives = 559/582 (96.05%), Query Frame = 3
Query:  354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L   EFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLV+LGDTGDTRVTL+DPSDIASWGRLKNEGVLEPRL RKLWPNGLSEYV+PTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCL+QTPA  ASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGG+G++D   IFAVVLEYSPSDNEL AQIFGDISTPAPW ALSY VSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTG+KILEG RCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIF EVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESL+RL+TLQAPNYPYPRLVA+EE ASGGTLTRARGMKRVLSK RGV T+EMTLHFLCPVDMTKVPCGYDG+GYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDR LDEDELRRVVSGEEDVGTDMQKQTRASYEALTE + KLERRKDARDGDGYVDFRENMQRLSDG GGEVWVRNENVQKWLDSHSS  PSR
Sbjct:  655 LAIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPSDIASWGRLKNEGVLEPRLARKLWPNGLSEYVIPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLDQTPALRASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGVGEQDRSGIFAVVLEYSPSDNELTAQIFGDISTPAPWVALSYVVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGDKILEGSRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFREVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLMRLQTLQAPNYPYPRLVAIEEIASGGTLTRARGMKRVLSKLRGVGTKEMTLHFLCPVDMTKVPCGYDGDGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRMLDEDELRRVVSGEEDVGTDMQKQTRASYEALTELMGKLERRKDARDGDGYVDFRENMQRLSDGRGGEVWVRNENVQKWLDSHSSAAPSR 1236          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUC9_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC9_ECTSI)

HSP 1 Score: 983 bits (2542), Expect = 0.000e+0
Identity = 492/582 (84.54%), Postives = 526/582 (90.38%), Query Frame = 3
Query:  354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L+  EFDGSLVRHE FVFLDVVWLARILKPLLNHKDEETFDGLV+LGDTGDTRVTL+DP DIASWGRLKN+GVLEPRL R +WPNGLS+YVLPT+ASLGLTFPL+NDPAGGLVVLLRL  DRPE VGKVIDTFCL+QTPAFS SWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYS SDNEL AQIFGDISTPAPW ALSY +SAV LMLLDFPGLRSRGSLKCPQHGDAM L N +T+ G K+LE   C QCSPDTRGLGAAAIDLV MVDIRLDRDVIF +VK RFV+LE QYSFSSS ASSNDE VL+QKMEEVARTLKDG DDLKGRL KVLDSTQESL+RLK LQA NYPYPRLVAVEE ASGGT ++A G+ RVL+K RGV T+EM LHFLCPVDMTKVPCGY GEGYRFRE RRWVKKLSPVLQVA+VTAKVA+KATSGLDVDLS+FLKDV DG VDELVD+TLDED L RVV GEED G +M+K+TRASYEAL  F+ KLERRKDARDGDGYVDFR+NMQRLSDG GGEVWVRNENV++WLDSHS+  PSR
Sbjct:  555 LSIREFDGSLVRHEMFVFLDVVWLARILKPLLNHKDEETFDGLVNLGDTGDTRVTLEDPLDIASWGRLKNQGVLEPRLARTMWPNGLSKYVLPTLASLGLTFPLKNDPAGGLVVLLRLNPDRPERVGKVIDTFCLDQTPAFSTSWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSSSDNELTAQIFGDISTPAPWVALSYVISAVRLMLLDFPGLRSRGSLKCPQHGDAMLLVNKMTQAGVKLLEPSGCPQCSPDTRGLGAAAIDLVSMVDIRLDRDVIFRDVKQRFVELESQYSFSSSAASSNDEDVLIQKMEEVARTLKDGLDDLKGRLGKVLDSTQESLMRLKNLQAANYPYPRLVAVEEIASGGTPSKAHGINRVLNKLRGVGTKEMVLHFLCPVDMTKVPCGYGGEGYRFREARRWVKKLSPVLQVAVVTAKVALKATSGLDVDLSNFLKDVQDGFVDELVDQTLDEDTLLRVVLGEEDAGFNMRKETRASYEALRGFMGKLERRKDARDGDGYVDFRDNMQRLSDGRGGEVWVRNENVERWLDSHSNAVPSR 1136          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 828 bits (2140), Expect = 1.710e-289
Identity = 415/592 (70.10%), Postives = 485/592 (81.93%), Query Frame = 3
Query:  351 TLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVART-------LKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            +L+  EFDGSLVRHE FVFLDVVWLARILKPLLNHKD+ETFDG V+LGDTGDT +TL DPSDI SW RLK EGVLEPRL   +WP+GLSEYVLPT+ASLG TFPLENDP  GLVVLLRL  +RPE VGKVIDTFC   TPAFSASWKIFLGVP GA+EKVLTRCC LG V+TFWR GVLVHG  G +DG   FAVVLEYS +DNEL A+IFGDISTPA W ALSY +SAV LML+DFPGLR +GSLKCP+HGDAM   +   R G+K+LEG RC QCS DT GLGAAAIDLVR VDIRLDRDVIF EVKARF DL+ QYS S  T  S +EG L++K+++VAR        +KDGF  +  RL KVL+STQESL+R++ LQAPNY YPRLV V+E  S GT ++A G K VLSK R +  ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTA+VA+ AT+GLDV++S+FL+DV DGLV+ELVDRTLDE+ L R VSG++D+G ++Q+ TRASYEAL +F+ K  ++R K+ARDGDGY+DFR+ M+R++DG GG VWVRN+NVQKWLDSHS   P+R
Sbjct:  206 SLSVREFDGSLVRHEKFVFLDVVWLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDIKSWDRLKKEGVLEPRLAYAMWPDGLSEYVLPTLASLGFTFPLENDPDEGLVVLLRLTPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGVVRTFWRYGVLVHGSFGAQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVKLMLMDFPGLRWKGSLKCPEHGDAMLFVDKARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFKEVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVARAVRSVKKEMKDGFIMISERLDKVLESTQESLMRIRNLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTARVALNATTGLDVNISNFLQDVKDGLVNELVDRTLDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 797          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 842 bits (2175), Expect = 2.230e-288
Identity = 449/687 (65.36%), Postives = 501/687 (72.93%), Query Frame = 3
Query:  300 LRLVDRPTRSHIRI------LYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKG-------------------------------------------------------------------------------RLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLE--RRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L  VD   R  I +      L   L+  EFDGSLVRHETFVFLDVVWLARILKPLLNHKDEE+FDGLV+LGDTGDTRVTL+DP DI SW RLKNEGV+EPRL   LWP+GLSE+VLPT+ASLGLTFPLENDPA GLVVLLR + D PE VGKVIDTFC    PAFSASWKIFLGVP GAIEKVLTRCC+LGGV+TFWRS V VHGG G + GHE+FAVVLEYS ++NEL A+IFGDISTP PW ALSY +SAVSLM+ DFPGLRSRGSLKCPQHGDAM LA  V R G+K LEG RC QCS DTRGLGAAAIDLVRMVDIRLDRD IF EVK RFVDLEG+YSFSS   SS  E +L+QK++ VA  +  GF+++KG                                                                               RL  V  +TQE L+RLK LQAPNY YPRLVAVEE ASG T +RA GMKRVLSK RGV  +EM LHFLCPVDMTKVPCGY GEGYRFRETR WVKK+SPVLQVA+VTAKVA+ AT+GL+V++S+FLKDV DGL DELVDR+LDED L RVVSGEEDV  DMQ  TRASYEAL + + K +  R K+ARDGDGY+DFR+ M+R+ DG GG VWVRNENVQ+WLDSHS+T PSR
Sbjct:  559 LETVDELARREITVTSAKNALEGALSIREFDGSLVRHETFVFLDVVWLARILKPLLNHKDEESFDGLVNLGDTGDTRVTLEDPLDIVSWFRLKNEGVIEPRLACALWPDGLSEHVLPTLASLGLTFPLENDPAEGLVVLLRQKPDCPESVGKVIDTFCSEHIPAFSASWKIFLGVPPGAIEKVLTRCCNLGGVRTFWRSAVFVHGGHGYQGGHEMFAVVLEYSSANNELTAKIFGDISTPTPWMALSYVMSAVSLMMRDFPGLRSRGSLKCPQHGDAMLLATKVPRPGDKFLEGSRCPQCSADTRGLGAAAIDLVRMVDIRLDRDEIFHEVKERFVDLEGRYSFSSPAGSSKGENLLIQKIDGVAIAVHGGFNEMKGEANGIRAGLGDVKGXIRGGFHEMXXXXXXXXXXXXXXXEDTKAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKGRLENVFKNTQEILMRLKNLQAPNYLYPRLVAVEEVASGSTPSRAHGMKRVLSKLRGVGKKEMVLHFLCPVDMTKVPCGYGGEGYRFRETRGWVKKISPVLQVAVVTAKVALNATAGLNVNISEFLKDVKDGLADELVDRSLDEDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPSR 1245          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 821 bits (2121), Expect = 3.930e-284
Identity = 415/620 (66.94%), Postives = 490/620 (79.03%), Query Frame = 3
Query:  354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLS------------------------------------KVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L+  EFDGSLVR E FVFLDVVWLARILKPLLNHKD+ETFDG V+LGDTGDT +TL DPSDI SW RLK EGVLEP+L   +WP+GLSEYVLPT+ASLGLTFPLENDP  GLVVLLRL+ +RPE VGKVIDTFC   TPAFSASWKIFLGVP GA+EKVLTRCC LGGV+TFWR GVLVHG LG +DG   FAVVLEYS +DNEL A+IFGDISTPA W ALSY +SAV LML+DFPGLR +GSLKCPQHGDAM   +M  R G+K+LEG RC QCS DT GLGAAAIDLVR VDIRLDRDVIF++VKARF DL+ QYS S  T  S +EG L++K+++VA  +K GF +++G +S                                    KVL+ST+ESL+R++ LQAPNY YPRLV V+E  + GT ++A G K VLSK R +  ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GLDVD+S+FLKDV DGLV+ELVDRT+DE+ L R VSG++D+G ++Q+ TRASYEAL +F+ K  ++R K+ARDGDGY+DFR+ M+R++DG GG VWVRN+NVQKWLDSHS   P+R
Sbjct:  346 LSVREFDGSLVRRENFVFLDVVWLARILKPLLNHKDQETFDGRVNLGDTGDTPITLDDPSDITSWDRLKKEGVLEPKLAYAMWPDGLSEYVLPTLASLGLTFPLENDPDEGLVVLLRLKPNRPESVGKVIDTFCSGLTPAFSASWKIFLGVPPGAVEKVLTRCCGLGGVRTFWRYGVLVHGSLGVQDGRRTFAVVLEYSSTDNELTAKIFGDISTPAAWVALSYVMSAVRLMLVDFPGLRWKGSLKCPQHGDAMLFVDMARRGGDKLLEGSRCPQCSVDTGGLGAAAIDLVRFVDIRLDRDVIFNDVKARFDDLDSQYSLSCPTDPSQEEGELIRKIDDVATAVKGGFAEVEGGVSNLKGEMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKVLESTKESLMRIRNLQAPNYRYPRLVVVKEVGADGTASKAHGKKSVLSKLRRLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTIDEEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 965          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7FZA1_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA1_ECTSI)

HSP 1 Score: 800 bits (2066), Expect = 6.970e-275
Identity = 427/653 (65.39%), Postives = 483/653 (73.97%), Query Frame = 3
Query:  183 VLDR*AINEGRVLEDWFGPVSRWKSGNAPSQGHRW--FVNSLRLVDRPTRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLK----------GRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERR--KDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            VL +   +E R  E   G  + +++      G  W   V+ L        +    L   L+  EFDGSLVRHE FVFLDVVWLARILKPLLNHKD+ TFDG V+LGDTGD R+TL D SDIASWGRLKNEGVLEPRL   +WP+GLSEYVLPT+ASLGLTFPLE DP  GLVVLLRLE +RP  VG+ IDTFC   TPAFSASW+IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD DG  IFAVV EYS ++NEL AQIFGDIST APW ALSY  SAVSLML+DFPGLR  GSLKCPQHG  MP A  V   G+K LE  RC +CSP TRGLGAAAIDL+RMVDIRLDR VI  EVKARF  LE QY F+    SS DE   V+KM+EV                      GRL KVL+STQESL RLK LQAPNY YPRLV V+E  S GT ++A G K +LSK RG+  ++M LHFLCPVDMT VPCGY GEGY+F+ETR WVK++SP LQV +VTAKVA+ A +GL+VD+SDFLKDV DGLV+ELVDRTLDED L R VSG++ VG D+Q+ TRASYEAL  F+   ERR  K+ARDGDGY++FRE M+RL DG GGEVWVRNENV+KWL S+SS  PSR
Sbjct:  382 VLLKSPDSERRPTETGVGKTNVYQAIKVEELGTNWRETVDELGKRGIVVTNAENALEGALSIREFDGSLVRHEKFVFLDVVWLARILKPLLNHKDQRTFDGRVNLGDTGDARITLDDSSDIASWGRLKNEGVLEPRLAYAMWPDGLSEYVLPTLASLGLTFPLEGDPDNGLVVLLRLEPNRPASVGEAIDTFCSKYTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVTEYSSTNNELTAQIFGDISTSAPWVALSYVTSAVSLMLMDFPGLRWNGSLKCPQHGYEMPFATKVNCAGDKFLER-RCPRCSPQTRGLGAAAIDLIRMVDIRLDRGVIDREVKARFDVLESQY-FTCPAGSSTDEDEFVRKMDEVKAEXXXXXXXXXXXXXXXXXXAGRLDKVLESTQESLARLKNLQAPNYHYPRLVVVKEVGSHGTSSKAHGKKSMLSKLRGLGKKDMRLHFLCPVDMTTVPCGYGGEGYQFQETRAWVKRVSPALQVTVVTAKVALNAVTGLNVDISDFLKDVKDGLVEELVDRTLDEDALLRAVSGDDTVGADLQRDTRASYEALKVFMENEERRRRKNARDGDGYIEFREEMKRLPDGRGGEVWVRNENVRKWLASNSSPAPSR 1032          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D8LF46_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF46_ECTSI)

HSP 1 Score: 806 bits (2081), Expect = 1.680e-273
Identity = 421/613 (68.68%), Postives = 483/613 (78.79%), Query Frame = 3
Query:  276 GHRW--FVNSLRLVDRPTRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVL-SKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKLERR--KDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            G +W   V+ L        + +  L   L+  EFDGSLVRHE FVFLDVVWL+RILKPLLNHKD+ TFDG V LGDTGDTR+TL D SDI SW RLK+EGVLEPRL   +WP+GLSEYVLPT+ S+GLTFPLE DP  GLVVLLRLE  RPE VG+VIDTFC   TPAFSASW+IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD DG  IFAVV+EYS +DNEL AQIFGDISTPAPW ALSY +SAVSLML+DFPGLR +G LKCPQHG+ MP AN V R G+K LE  +C +CSP+TRGLGAAAIDLV +VDIRLDRDVIF EVKARFV LE QY FS  T SS  E  L++K+E++A  +K     + GRL  VL+STQESL+RLK LQAPNY YPRLV V++  +GG  +RA G KR L SK RG+  ++MTLHFLCPVDMT+VPCG  GEGYRFRE R WVKK+SPVLQV +VTAKVA+ A +GL+VD+S FLKDV DGL+ E+VDRTLDED L R VSG+  + TD+Q+ TRASYEAL  F+   ERR  K+ARDGDGY+DFR+ M+ L DG GGEVW+RNENVQKWLDS+SS  PSR
Sbjct:  697 GTKWQETVDELERRGITVTNMMNALEGALSIREFDGSLVRHEKFVFLDVVWLSRILKPLLNHKDQRTFDGRVKLGDTGDTRITLHDQSDIDSWDRLKSEGVLEPRLANAMWPHGLSEYVLPTLVSVGLTFPLEGDPDAGLVVLLRLEPHRPESVGEVIDTFCSKHTPAFSASWEIFLGVPPGAIEKVLTRCCGLGDVQTFWRYGVLVHGGLGDLDGRGIFAVVVEYSSTDNELTAQIFGDISTPAPWVALSYVMSAVSLMLVDFPGLRWKGCLKCPQHGNEMPFANKVNRAGDKFLER-KCPRCSPETRGLGAAAIDLVCLVDIRLDRDVIFREVKARFVVLESQY-FSCPTGSSKTEDELLRKIEDMAIAMK----VMTGRLDTVLESTQESLMRLKNLQAPNYLYPRLVVVKKDGNGGRSSRATGWKRCLPSKLRGMGKKDMTLHFLCPVDMTEVPCGPGGEGYRFREMRDWVKKISPVLQVTLVTAKVALNAVTGLNVDVSGFLKDVQDGLLGEIVDRTLDEDALLRAVSGDGAIDTDLQRDTRASYEALKAFMENEERRRRKNARDGDGYIDFRDKMKLLPDGRGGEVWIRNENVQKWLDSNSSPAPSR 1303          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 792 bits (2045), Expect = 5.460e-268
Identity = 413/654 (63.15%), Postives = 478/654 (73.09%), Query Frame = 3
Query:  354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTAS-SNDEGVLVQKMEEVARTLKDGFDDLK---------------------------------------------------------------------GRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L+  EFDGSLV HE FVFLDVVWLARILKPLLNHKD+E FDG V+LGDTGDTR+TL D +DIASW RLK EGVLEPRL   +WPNGLSEYVLPT+ASLGL FPLENDPA GLVVLLRL+  RPE VGKVIDTFC   TPAF ASWKIFLGVP GAIEKVLTRCC LGGVQTFWR GVLVHGGLG +D    FAVV+EYS +DNEL AQIFGD+STP PW A SY +SAVSLML+DFPGL  +G L+CPQHGD M   N  TR G+K LEG RC QCS DT GLGAAAIDL+R VDIRLDRDVIF+EVKARF DLE QYSF+  T   S +E  L++K++ +A  ++  F+++K                                                                     GRL KVL+STQESL+RL+ LQAPNY YPRLV V+E  S GT ++ARG K +LSK  GV  ++MTL FLCPVDMT+VPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GL VD+SDFLKDV DGLV+ELVDRTLD++ L R V G++++G D+Q+ TRASYEAL +F+ K  +ER K+ RDGDGY+DFR+ M+R+ DG GG VWVRNENVQKWLDS S   P+R
Sbjct:  659 LSIREFDGSLVPHEKFVFLDVVWLARILKPLLNHKDQEMFDGRVNLGDTGDTRITLDDSADIASWDRLKKEGVLEPRLAYAIWPNGLSEYVLPTLASLGLIFPLENDPAEGLVVLLRLKPHRPESVGKVIDTFCSGLTPAFRASWKIFLGVPPGAIEKVLTRCCGLGGVQTFWRYGVLVHGGLGVQDERRTFAVVVEYSSTDNELIAQIFGDVSTPGPWGATSYVMSAVSLMLVDFPGLGWKGYLECPQHGDGMLFVNKATRDGDKFLEGSRCPQCSADTGGLGAAAIDLLRFVDIRLDRDVIFNEVKARFNDLESQYSFTCPTHDRSKEESELIRKIDGMATAVQGAFNEVKVEXXXXXXXXXXXXXXXFAEVEGGLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLGMISGRLDKVLESTQESLMRLRDLQAPNYRYPRLVVVKEVGSDGTASKARGRKSMLSKLCGVGKKDMTLQFLCPVDMTQVPCGYGGEGYRFKETRSWVKKISPVLQVAVVTAKVALNATTGLHVDISDFLKDVKDGLVEELVDRTLDDEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPTR 1312          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 771 bits (1992), Expect = 6.260e-263
Identity = 402/631 (63.71%), Postives = 475/631 (75.28%), Query Frame = 3
Query:  354 LTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGDEDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEGVLVQKMEEVARTLKDGFDD--------------LKGRLSK------------------------------------VLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAK--LERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTT 2090
            L+  EFDGSLVRHETFVFLDV+WLARILKPLLNHKD+ETFDG V+LGDTGD R+TL DP  IASWGRLKNEGVLEPRL   +WP GLSEYVLPT+ASLGLTFPLE D   G VVLLRL+ +RP+ VG+VIDTFC   TPA SASW IFLGVP GAIEKVLTRCC LG VQTFWR GVLVHGGLGD  G  IFAVVLEYS +D++L  QIFGDI TPAPW ALSY +SAVSLML+DFPGLR  G+LKCPQHGDAM +AN VT+ GE  L+  RC +CS +T+GLGAAAIDL+RMVDIR+DR  IF EV  RF  L+G YSF     SS  +  L + +E + +T+K G DD              ++G + +                                    VL+STQESL+RLK LQAPNY YPRLV V+E  SGGT ++A G K +L+K RG++ ++MTLHFLCPVDMT+VPCGY GEG+RF++TR WV+K+SPVLQVA+VTAKVA+ AT+GL+VD SDFLKDV DGLV ELVDRTLDE  LRRVV+GEE +G DMQ+ TRASYEAL +F+ K  ++R KDA+DGDGYV FR+ M+R++DG GG VWVRN+NVQKWL+S ++ T
Sbjct:  461 LSIREFDGSLVRHETFVFLDVLWLARILKPLLNHKDQETFDGRVNLGDTGDARITLDDPLYIASWGRLKNEGVLEPRLAYAMWPGGLSEYVLPTLASLGLTFPLEGDLDEGQVVLLRLKPERPDSVGEVIDTFCSRHTPALSASWNIFLGVPPGAIEKVLTRCCGLGAVQTFWRYGVLVHGGLGDLGGRGIFAVVLEYSSTDHKLNGQIFGDIGTPAPWVALSYVMSAVSLMLVDFPGLRWGGALKCPQHGDAMLMANKVTQAGETFLKR-RCPRCSTETKGLGAAAIDLLRMVDIRMDRGEIFDEVMERFDALKGHYSFDGQAGSSKKKDGLTRMVESIIKTMKGGVDDXXXXXXXXXXXXXXVQGEVRRGFGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVLESTQESLMRLKNLQAPNYLYPRLVVVKEVGSGGTSSKAHGKKSMLTKLRGLAKKDMTLHFLCPVDMTRVPCGYGGEGHRFKQTRGWVRKISPVLQVAVVTAKVALNATTGLNVDPSDFLKDVRDGLVGELVDRTLDEHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKWLESRAAPT 1090          
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Match: A0A6H5JYD1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD1_9PHAE)

HSP 1 Score: 756 bits (1952), Expect = 6.260e-262
Identity = 416/729 (57.06%), Postives = 496/729 (68.04%), Query Frame = 3
Query:  186 LDR*AINEGRVLEDWFGPVSRWKSGNAPSQ------------GHRWFVNSLRLVDRP--TRSHIRILYQTLTCTEFDGSLVRHETFVFLDVVWLARILKPLLNHKDEETFDGLVHLGDTGDTRVTLKDPSDIASWGRLKNEGVLEPRLVRKLWPNGLSEYVLPTIASLGLTFPLENDPAGGLVVLLRLEHDRPELVGKVIDTFCLNQTPAFSASWKIFLGVPAGAIEKVLTRCCSLGGVQTFWRSGVLVHGGLGD-EDGHEIFAVVLEYSPSDNELAAQIFGDISTPAPWAALSYTVSAVSLMLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEK----------------------------ILEGGRCRQCSPDTRGLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTAS-----------------SNDEGVLVQKMEEVA-----------------------------RTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPRLVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCGYDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDVNDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFV--AKLERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPSR 2099
            L R  + E  ++    GP  R  +  APS+            G +W    L L  R     +    L   L+  EFDGSL+RHETFVFLDVVWL+RILKPLLNHKD+ETF+G V LGD GD+ +TL D  DIASW RLK+EG+LEPRL   +WP GLSEYVLPT+ SLGLTFPLEND AGGLVVLLRL+  RP  VGKVIDTFC    P FSASWKIFLGVPAGA+EKVLTRCCS+GGVQTFWR GVLVHG  GD  DG   FAVVLEYS  +NEL AQI+GD S PAPWAALSY +S+V  +LL+FPGLR RG LKCPQHGD M L + V R                                +LE   CRQCSP  RG GAAAI L+RMVDIRL+RDV+F EVKARF  LE ++ FS  T S                 S ++G L++KM++VA                             + +KDGF  + GRL KVL+STQESL+R++ LQAPNY YPRLV V+E  S GT ++A G K +LSK R +  ++MTLHFLCPVDMTKVPCGY GEGYRF+ETR WVKK+SPVLQVA+VTAKVA+ AT+GLDVD+S+FLKDV DGLV+ELVDRTLDE  L R VSG++D+G ++Q  TRASYEAL +F+   +++R K+ARDGDGY+D R+ M+R++DG GG VWVRN+NVQKWLDSHS   P+R
Sbjct:   17 LHRDPVEE--IVRKLAGPDEREAARTAPSKVEMYRGITVEELGAKWLEAVLELEKREITVANAEHALEGALSIREFDGSLIRHETFVFLDVVWLSRILKPLLNHKDQETFEGFVKLGDNGDSCITLHDQVDIASWRRLKSEGILEPRLAHVIWPAGLSEYVLPTLVSLGLTFPLENDDAGGLVVLLRLKPGRPARVGKVIDTFCSQNIPVFSASWKIFLGVPAGAMEKVLTRCCSIGGVQTFWRFGVLVHGSFGDARDGSGDFAVVLEYSSINNELTAQIYGDKSQPAPWAALSYVISSVRFVLLEFPGLRWRGLLKCPQHGDPMLLDSEVYRRSHSGTLPVLKFPLEALNFEIYDRTILQGDQLLLESAGCRQCSPKIRGQGAAAIKLLRMVDIRLERDVVFDEVKARF--LECEHIFSRPTLSVAVLCLSSRHVCTKQDPSQEQGELIRKMDDVATAVEVGISNLEGVVKGGFHDTNTELRGVKKEVKDGFSMISGRLDKVLESTQESLMRIRHLQAPNYRYPRLVVVKEVGSDGTASKAHGKKSLLSKLRLLGKKDMTLHFLCPVDMTKVPCGYGGEGYRFQETRGWVKKISPVLQVAVVTAKVALNATTGLDVDISNFLKDVKDGLVNELVDRTLDE-ALLRAVSGDDDIGAELQTDTRASYEALKKFMDQEQVDRVKNARDGDGYIDLRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPTR 740          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12652.2196.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUD0_ECTSI0.000e+093.64LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUC9_ECTSI0.000e+084.54LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE1.710e-28970.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUC3_ECTSI2.230e-28865.36LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K1K4_9PHAE3.930e-28466.94Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7FZA1_ECTSI6.970e-27565.39LRR-GTPase of the ROCO family, incomplete sequence... [more]
D8LF46_ECTSI1.680e-27368.68LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI5.460e-26863.15LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7G431_ECTSI6.260e-26363.71LRR-GTPase of the ROCO family, incomplete sequence... [more]
A0A6H5JYD1_9PHAE6.260e-26257.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12652contigEcto-sp13_S_contig12652:761..4980 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score661.4
Seed ortholog evalue2.4e-187
Seed eggNOG ortholog2880.D7FUD0
Model size2672
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Exons5
EggNOG OGs2CYK8@1,2S4YE@2759
EC3.2.1.21
Cds size1056
CAZyGH1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12652.2196.1prot_Ecto-sp13_S_contig12652.2196.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12652 1331..3934 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.6835778-UTR-Ecto-sp13_S_contig12652:760..13301681462675.6835778-UTR-Ecto-sp13_S_contig12652:760..1330Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12652 761..1330 -
1681462675.7422655-UTR-Ecto-sp13_S_contig12652:3934..49801681462675.7422655-UTR-Ecto-sp13_S_contig12652:3934..4980Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12652 3935..4980 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.696466-CDS-Ecto-sp13_S_contig12652:1330..17171681462675.696466-CDS-Ecto-sp13_S_contig12652:1330..1717Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12652 1331..1717 -
1681462675.7047691-CDS-Ecto-sp13_S_contig12652:1964..23541681462675.7047691-CDS-Ecto-sp13_S_contig12652:1964..2354Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12652 1965..2354 -
1681462675.7161813-CDS-Ecto-sp13_S_contig12652:2967..30381681462675.7161813-CDS-Ecto-sp13_S_contig12652:2967..3038Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12652 2968..3038 -
1681462675.725109-CDS-Ecto-sp13_S_contig12652:3273..33971681462675.725109-CDS-Ecto-sp13_S_contig12652:3273..3397Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12652 3274..3397 -
1681462675.7334478-CDS-Ecto-sp13_S_contig12652:3850..39341681462675.7334478-CDS-Ecto-sp13_S_contig12652:3850..3934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12652 3851..3934 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12652.2196.1

>prot_Ecto-sp13_S_contig12652.2196.1 ID=prot_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=352bp
MLLDFPGLRSRGSLKCPQHGDAMPLANMVTRTGEKILEGGRCRQCSPDTR
GLGAAAIDLVRMVDIRLDRDVIFSEVKARFVDLEGQYSFSSSTASSNDEG
VLVQKMEEVARTLKDGFDDLKGRLSKVLDSTQESLVRLKTLQAPNYPYPR
LVAVEEFASGGTLTRARGMKRVLSKPRGVSTREMTLHFLCPVDMTKVPCG
YDGEGYRFRETRRWVKKLSPVLQVAMVTAKVAIKATSGLDVDLSDFLKDV
NDGLVDELVDRTLDEDELRRVVSGEEDVGTDMQKQTRASYEALTEFVAKL
ERRKDARDGDGYVDFRENMQRLSDGWGGEVWVRNENVQKWLDSHSSTTPS
R*
back to top

mRNA from alignment at Ecto-sp13_S_contig12652:761..4980-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12652.2196.1 ID=mRNA_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4220bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12652:761..4980- (Ectocarpus species13 EcNAP12_S_4_19m)
GCGGGCATTAGTGACAGATAGGGGTTTTCAAACCCAAGCGCGGAGCTGGA CTTCTAGAGTGCCCGGAATACCGCAGATACGTAGAGAGCTTCCCATGACG ACATCGAGACCAGAGTATTTTTGTATTTTCATCCCGGGATGATAGGCTCC ACTTCCAACCATACTTGTCGCCGCCATTCGGTGTGCTTGATCGCTGAGCG ATCAACGAGGGTCGTGTGCTTGAGGATTGGTTTGGTCCTGTTTCGAGATG GAAATCTGGCAACGCCCCTTCCCAAGGCCATAGATGGTTTGTGAACTCCT TGCGTTTGGTGGATCGGCCAACTCGTTCGCATATTCGCATACTCTACCAA ACACTCACATGCACGGAGTTCGATGGATCCCTCGTTCGCCACGAGACGTT TGTCTTTCTGGACGTCGTTTGGCTGGCCAGAATCCTCAAACCCTTGCTCA ACCACAAGGATGAGGAGACATTCGACGGGCTTGTGCACCTAGGAGACACA GGCGATACACGTGTCACCCTCAAGGACCCATCGGACATCGCTTCGTGGGG CAGGCTCAAGAACGAGGGCGTGCTAGAACCCCGGTTGGTGCGAAAGCTGT GGCCTAATGGCCTGTCCGAGTACGTTCTCCCCACCATTGCCTCCCTGGGT CTCACTTTCCCACTCGAAAACGATCCTGCTGGGGGGCTGGTAGTGCTGCT GCGGCTAGAACACGACCGCCCCGAGCTTGTGGGCAAAGTGATCGACACAT TCTGCCTGAACCAAACTCCGGCATTCAGCGCAAGTTGGAAGATTTTTCTC GGGGTACCGGCTGGTGCGATTGAGAAGGTATTGACGCGGTGCTGCAGCCT CGGTGGCGTACAGACGTTTTGGCGGTCTGGGGTGCTTGTGCATGGTGGTC TTGGCGACGAAGATGGGCACGAGATATTTGCCGTGGTCTTGGAGTACTCG CCCTCGGACAATGAGCTAGCAGCTCAGATTTTCGGCGATATCAGCACTCC AGCTCCATGGGCGGCACTTTCGTACACCGTCTCAGCCGTAAGCTTGATGC TGCTAGATTTCCCAGGACTGCGCTCCAGGGGCTCTCTCAAATGTCCGCAG CATGGTGACGCGATGCCCCTGGCAAATATGGTGAGCCCTCAGAGCCTTGT GCTGTCTAATGACGCATGGTTGCCCTAGCCAGGGTGCACTTGTGTAAGCA GTTCGTGGGCAGTTCTGGGCGCAATCGACGTTGTTGATACATTCACATGC GATTCGCATACGCATCTAATTGTCCGCATTTTCCGTCTGGTGCTCAAAGT TACACGTTGAGTAGGGACCTAGGCGAGTTCTCCAGGGTGTGTGCAGTGTG TAATACTCTTTCCATGGAGTGTTGTTGGGCTAAACGTTTCCACAACGGGG CAGCGTAGCAAAGACGTCCGAAGGCGTGCGCGGGTGCTGTGCCGTCAGAC AACGACACTTGTGCTGGCGTTTTTCCTTGGTGGCAATTGTTTTACTCTAG TCTGAGTAGACAAGAATCCCTCGAGTCGCTTTCACTCATCGCCAGCGCAT TACCGATGTACGGGGTTGCATTTCCCTTGTCAGGTGACTCGCACTGGTGA AAAAATCCTGGAAGGCGGTAGATGCCGACAGTGCAGTCCCGACACGAGGG GACTCGGGGCTGCCGCCATCGATCTCGTACGCATGGTAGACATCCGCCTG GACCGAGGTATGTACGACAAGTAGAGAGGTTGGGGTAGTGGAGCATTTGG GGCAGAGAGGAGTCAAGAACAGTGCATCTCAATAAATTTCGACCACATCT AGCGTTGTTCGGTTTCGGCTTGTGTCATCACACCTTACTGCCGACAAATG GCGCTACCGCATGACGAGAATCATCCGGCGCGAATGGTAAGAAAGGATTG ACGCGCGACGAGCGACTTCCCCCAACTGTGTTGTAAACGCAGACGTGATT TTCAGCGAGGTCAAGGCAAGGTTCGTCGACCTGGAGGGCCAGTACTCCTT CTCGAGCTCGACGGTGAGAATGGTTTGCATGTCCTCGACTGTTGATGTGG CCGAATGAAACGTTGGAAGAGGTTTCGCCACAATACGTTCCCGATAACTT TTTCGACCCGTACATGTCGGCGACTTGAATACCTCACGCCCCAAACACGC TCTCCACACAAAGTGCACTGCGACAAGAGGTCTGTCTCTTGGCTTTTCTA TATTCACGATTGATATTCAAACGGCCGAAAGGTTGTTGAGGGCGGGTAGA ATGCGATACATGCAGGCAATGATAGTTTCGCTCTCGCCTTGATCATTCGC TCCCTGCTCGAACGAGTGTGCCCAACTCTGGTGTAGGGCATAAACCTCAT AACGATGGCATAAGGTAGAAGCGGTAGTGCAACCAAGGGTACTACGATGC ATATCCCAGCGTTCCTCTTCAGTGCAAGGGTATCCTGTGGGAAGTTGTTG GTAAGGCCTGGCCCGTAGTACAACCACCACCTCGCCCTACCGGTAAAGGC GTTCCCTACACGTTTTGCGAGAAAAGTTTGTGCCATATGTTGGGTGGGCA ATTCGTAAACAGATTGGAAGTTACAGCAGCTGACCCTGCGTACGGTATCC CTGATGCAACATCGTGCTTGCGATAGGCGAGCTCCAATGACGAGGGCGTG CTGGTTCAGAAAATGGAGGAGGTGGCAAGAACTTTGAAGGATGGGTTTGA TGACCTAAAGGGGAGGTTGAGCAAGGTCCTGGACAGCACCCAGGAAAGTC TCGTGCGTCTCAAGACCTTGCAGGCACCGAACTACCCGTATCCTCGTCTT GTGGCCGTAGAAGAATTTGCTTCTGGTGGCACTCTGACGAGAGCTCGAGG GATGAAGAGAGTACTGAGCAAGCCTCGTGGCGTGAGTACGAGGGAGATGA CCCTGCACTTCTTGTGCCCGGTCGATATGACCAAGGTGCCGTGCGGCTAC GACGGGGAAGGCTATCGTTTTCGGGAGACCCGTAGATGGGTCAAGAAGCT ATCGCCTGTGCTCCAGGTAAGGGAACGTAGGCCCTGGCTAATGTGAGGCA ACAGAATCGCCCCAACTTTCATCCATAGTCATTCCAAGGTTTCTACCTGT CTTACCTGAGGTTTCACGTCCAACGATAATTTTTCTTCTGATCGCTAAAT AGTTTGACTTACTCTTGTGGACCCGAAAAATGCATCAAGGTATGCACGAA CAATATTGAGTTTTGGTGCATGTCCGCGTGTCGTTGTTGTGTTCAAATGC ATTTCCTTCCTAGGTGGCCATGGTGACGGCGAAAGTAGCAATAAAGGCAA CGTCAGGGCTGGACGTAGATCTGTCGGACTTCCTCAAGGACGTGAACGAT GGGTTGGTCGATGAGCTAGTCGACCGAACGCTCGACGAGGACGAGCTACG TCGTGTTGTATCGGGTGAAGAGGACGTCGGTACCGATATGCAGAAGCAAA CAAGGGCCTCGTATGAAGCCCTGACAGAGTTCGTGGCGAAACTGGAAAGA CGTAAGGATGCCAGGGATGGTGATGGCTACGTAGACTTCAGGGAAAACAT GCAGCGCCTATCGGACGGATGGGGAGGGGAGGTATGGGTTCGTAACGAAA ACGTTCAAAAATGGTTGGACTCACACTCGAGCACTACTCCATCGCGGTAG GTGCTGGTGCAGCAATACGCACAACCGACATAATGTCGAACCAGTGGTAG ATTTGCCTCTCTGTCGTACCTGGTAGTAGGAAGGAGATCAAACGGAGCGC TGTGGTTTTAGGTGCTGGAGGCAGGAAGAGCTCGCGGGGGGAAATGGAGG ACGTGGGGCGTGAAGCCTCCGGGCCTAGTTGTCAAATTTTGTATGATGGA GGAAGAGCGTATGATTCTTTTACTCATTGAGTGGAGATAGTTATGTCGAG GCGAAATTTTCGCCTTTTTGTTCATGGCGTTCTTAGGTGAATAAGAGTTG TGTGTCGTGTTTGTGGTTCTTCTTTGGTCCGTGGTTGGTTGTGTTGTCGA TGCCCCTTGTTCTACGTCGGAACCAAGGTGGAGGTGTTTCCCGGTCGTCG AACATCCCGTGGGGGCATTACGGTACATTAATTTTTTGGGCGGGAGGTCA AACGCTGTGTTTGAATTTAATACGTAAGCGTAAACCATGGCAGCCATGGT GAATCGACGATAAATACGAACGACACTCTATGGTTTGTGAAGTGCTGGAC AGAGAAAGGTACGGTTGCAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12652:761..4980-

>mRNA_Ecto-sp13_S_contig12652.2196.1 ID=mRNA_Ecto-sp13_S_contig12652.2196.1|Name=mRNA_Ecto-sp13_S_contig12652.2196.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1056bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12652:761..4980- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTGCTAGATTTCCCAGGACTGCGCTCCAGGGGCTCTCTCAAATGTCC
GCAGCATGGTGACGCGATGCCCCTGGCAAATATGGTGACTCGCACTGGTG
AAAAAATCCTGGAAGGCGGTAGATGCCGACAGTGCAGTCCCGACACGAGG
GGACTCGGGGCTGCCGCCATCGATCTCGTACGCATGGTAGACATCCGCCT
GGACCGAGACGTGATTTTCAGCGAGGTCAAGGCAAGGTTCGTCGACCTGG
AGGGCCAGTACTCCTTCTCGAGCTCGACGGCGAGCTCCAATGACGAGGGC
GTGCTGGTTCAGAAAATGGAGGAGGTGGCAAGAACTTTGAAGGATGGGTT
TGATGACCTAAAGGGGAGGTTGAGCAAGGTCCTGGACAGCACCCAGGAAA
GTCTCGTGCGTCTCAAGACCTTGCAGGCACCGAACTACCCGTATCCTCGT
CTTGTGGCCGTAGAAGAATTTGCTTCTGGTGGCACTCTGACGAGAGCTCG
AGGGATGAAGAGAGTACTGAGCAAGCCTCGTGGCGTGAGTACGAGGGAGA
TGACCCTGCACTTCTTGTGCCCGGTCGATATGACCAAGGTGCCGTGCGGC
TACGACGGGGAAGGCTATCGTTTTCGGGAGACCCGTAGATGGGTCAAGAA
GCTATCGCCTGTGCTCCAGGTGGCCATGGTGACGGCGAAAGTAGCAATAA
AGGCAACGTCAGGGCTGGACGTAGATCTGTCGGACTTCCTCAAGGACGTG
AACGATGGGTTGGTCGATGAGCTAGTCGACCGAACGCTCGACGAGGACGA
GCTACGTCGTGTTGTATCGGGTGAAGAGGACGTCGGTACCGATATGCAGA
AGCAAACAAGGGCCTCGTATGAAGCCCTGACAGAGTTCGTGGCGAAACTG
GAAAGACGTAAGGATGCCAGGGATGGTGATGGCTACGTAGACTTCAGGGA
AAACATGCAGCGCCTATCGGACGGATGGGGAGGGGAGGTATGGGTTCGTA
ACGAAAACGTTCAAAAATGGTTGGACTCACACTCGAGCACTACTCCATCG
CGGTAG
back to top