mRNA_Ecto-sp13_S_contig1265.2192.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1265.2192.1
Unique NamemRNA_Ecto-sp13_S_contig1265.2192.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1265.2192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1265contigEcto-sp13_S_contig1265:4285..4785 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size502
Hectar predicted targeting categorysignal peptide
Exons1
Cds size333
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.4895768-CDS-Ecto-sp13_S_contig1265:4284..46171681462675.4895768-CDS-Ecto-sp13_S_contig1265:4284..4617Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1265 4285..4617 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.502936-UTR-Ecto-sp13_S_contig1265:4617..47851681462675.502936-UTR-Ecto-sp13_S_contig1265:4617..4785Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1265 4618..4785 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1265.2192.1prot_Ecto-sp13_S_contig1265.2192.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1265 4285..4617 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1265.2192.1

>prot_Ecto-sp13_S_contig1265.2192.1 ID=prot_Ecto-sp13_S_contig1265.2192.1|Name=mRNA_Ecto-sp13_S_contig1265.2192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=111bp
SRCCNSQPDFFGVCVFALAGQFVWLTFCRSAAQTPHIRLARSMLIKKTHT
HTHSHSFFLCTGAVDAVCIVLTCWESLRAMYRQLRVHALVRCRRAHTCVL
NVCVRVRRDR*
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mRNA from alignment at Ecto-sp13_S_contig1265:4285..4785+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1265.2192.1 ID=mRNA_Ecto-sp13_S_contig1265.2192.1|Name=mRNA_Ecto-sp13_S_contig1265.2192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=501bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1265:4285..4785+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCGTTGCTGTAATTCCCAACCTGATTTTTTCGGTGTGTGTGTGTTTGC
TCTTGCTGGCCAGTTTGTATGGCTAACTTTTTGTCGTTCGGCAGCTCAAA
CTCCACACATCCGGTTAGCGCGGTCGATGCTGATAAAGAAAACGCACACA
CACACACACAGCCACAGCTTCTTTCTTTGTACTGGTGCTGTAGACGCTGT
GTGTATTGTTCTTACCTGCTGGGAATCTCTCAGAGCTATGTACAGACAGC
TGCGTGTACACGCGTTAGTGAGATGCCGACGTGCACACACGTGCGTGCTG
AATGTATGCGTGCGTGTGCGAAGGGATAGGTAGAGGGAGTGAGGTGCTGC
GCTGTGAGGAGGGTTGGCTTACCAGAGCATAGAGAAACGGGCGTGCGAAG
TTATACGGGTCGGGCGTTGGTGTTTGCTGCTATCCTGAGAGAGGTTATCT
TGTGTGCCGTTGCTCGTTGTCGTTTCCTTCTTTTCTGACGACGGTTTGGG
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1265:4285..4785+

>mRNA_Ecto-sp13_S_contig1265.2192.1 ID=mRNA_Ecto-sp13_S_contig1265.2192.1|Name=mRNA_Ecto-sp13_S_contig1265.2192.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=333bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1265:4285..4785+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGTCGTTGCTGTAATTCCCAACCTGATTTTTTCGGTGTGTGTGTGTTTGC
TCTTGCTGGCCAGTTTGTATGGCTAACTTTTTGTCGTTCGGCAGCTCAAA
CTCCACACATCCGGTTAGCGCGGTCGATGCTGATAAAGAAAACGCACACA
CACACACACAGCCACAGCTTCTTTCTTTGTACTGGTGCTGTAGACGCTGT
GTGTATTGTTCTTACCTGCTGGGAATCTCTCAGAGCTATGTACAGACAGC
TGCGTGTACACGCGTTAGTGAGATGCCGACGTGCACACACGTGCGTGCTG
AATGTATGCGTGCGTGTGCGAAGGGATAGGTAG
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