mRNA_Ecto-sp13_S_contig12640.2187.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12640.2187.1
Unique NamemRNA_Ecto-sp13_S_contig12640.2187.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12640.2187.1 vs. uniprot
Match: A0A6H5KVB4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVB4_9PHAE)

HSP 1 Score: 275 bits (704), Expect = 2.400e-90
Identity = 142/165 (86.06%), Postives = 147/165 (89.09%), Query Frame = 2 
Query:  311 MVYCCSSSGSNGCLPAQAFVASPATHLRSAPAFAFRGRGRGGSTTWAPEMAFPAGGRRCFDTGLAFTRQQMIDMGLVPPEGAEQEAQDLLLSRPPSTEGKEGAGGHPAAMADDTEEPAEAVGLIGHFEASRLLAQKGKAGTFVGSLDMSMTERELVSTEEGVGEG 805
            M+YCCSSSG NGC  AQAFVASP TH RSAPA AFRGRGRGGST WA EMAFPAG   CF+T LAFTRQQMIDMGLVPPE +EQEAQDLL SRPPSTE +EGAGGHPAA+ADD EEPAEAVGLIGHFEASRLL QKGK GTFVGSLDMSMTERELVSTEEGVGEG
Sbjct:    1 MLYCCSSSGRNGCPSAQAFVASPTTHERSAPALAFRGRGRGGSTNWAAEMAFPAGRLWCFNTALAFTRQQMIDMGLVPPEASEQEAQDLLPSRPPSTEEEEGAGGHPAAIADDAEEPAEAVGLIGHFEASRLLVQKGKEGTFVGSLDMSMTERELVSTEEGVGEG 165
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BLAST of mRNA_Ecto-sp13_S_contig12640.2187.1 vs. uniprot
Match: D8LS47_ECTSI (Predicted methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS47_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 5.710e-51
Identity = 108/157 (68.79%), Postives = 113/157 (71.97%), Query Frame = 2 
Query:  458 MAFPA---GGRRCFDTGLAFTRQQMIDMGLVPPEGAEQEAQDLLLSRPPSTEGKEGAG------GHPAAMADDTEEPAEAVGLIGHFEASRLLAQKGKAGTFVGSLDMSMTERELVSTEEGVGEGIQIGLFCFFA*HPRPCT-DGGGDP*KGVFSSF 898
            MAFPA   GGRRC +T LAFTRQQMIDMGLVPPEGAEQEAQ+LLLSRP STE            GHPAAMADD EEPAEAVGLIGHFEASRLLAQKGK GTFVGSLDMSMTERELVSTEEGV            A  P P   DG GD    + +S+
Sbjct:    1 MAFPAPNTGGRRCSNTALAFTRQQMIDMGLVPPEGAEQEAQNLLLSRPYSTEXXXXXXXXXXXXGHPAAMADDAEEPAEAVGLIGHFEASRLLAQKGKEGTFVGSLDMSMTERELVSTEEGV------------ALPPSPAAADGDGDAESNLVASW 145
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12640.2187.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KVB4_9PHAE2.400e-9086.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LS47_ECTSI5.710e-5168.79Predicted methyltransferase n=1 Tax=Ectocarpus sil... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12640contigEcto-sp13_S_contig12640:941..4091 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score181.0
Seed ortholog evalue6.1e-43
Seed eggNOG ortholog2880.D8LS47
Model size953
KEGG koko:K06983
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.Pfam:Methyltransf_26
EggNOG OGs2S1AS@2759,COG2521@1
Ec32 ortholog descriptionS-adenosyl-L-methionine-dependent methyltransferase
Ec32 orthologEc-12_004840.1
Cds size678
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.136469-UTR-Ecto-sp13_S_contig12640:940..11001681462675.136469-UTR-Ecto-sp13_S_contig12640:940..1100Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12640 941..1100 +
1681462675.1790516-UTR-Ecto-sp13_S_contig12640:3976..40911681462675.1790516-UTR-Ecto-sp13_S_contig12640:3976..4091Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12640 3977..4091 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462675.1481826-CDS-Ecto-sp13_S_contig12640:1100..14101681462675.1481826-CDS-Ecto-sp13_S_contig12640:1100..1410Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12640 1101..1410 +
1681462675.1652062-CDS-Ecto-sp13_S_contig12640:3608..39761681462675.1652062-CDS-Ecto-sp13_S_contig12640:3608..3976Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12640 3609..3976 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12640.2187.1prot_Ecto-sp13_S_contig12640.2187.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12640 1101..3976 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12640.2187.1

>prot_Ecto-sp13_S_contig12640.2187.1 ID=prot_Ecto-sp13_S_contig12640.2187.1|Name=mRNA_Ecto-sp13_S_contig12640.2187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=226bp
MQEESPSFSDAYRAPTAMRRQRRRRRRRRRRPWRFENRSSNCSILLACSS
MVYCCSSSGSNGCLPAQAFVASPATHLRSAPAFAFRGRGRGGSTTWAPEM
AFPAGGRRCFDTGLAFTRQQMIDMGLVPPEGAEQEAQDLLLSRPPSTEGK
EGAGGHPAAMADDTEEPAEAVGLIGHFEASRLLAQKGKAGTFVGSLDMSM
TERELVSTEEGVGEGIQIGLFCFFA*
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mRNA from alignment at Ecto-sp13_S_contig12640:941..4091+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12640.2187.1 ID=mRNA_Ecto-sp13_S_contig12640.2187.1|Name=mRNA_Ecto-sp13_S_contig12640.2187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3151bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12640:941..4091+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTGCCTCTCTGTCTGTATTATACCTTGCTCCCGCTTTTAAGGGTCCCAAC
CAGAGAGACTAACTACAGAGTACCGGGGGGGACCGGGGGGCAGCGGTGTG
TCGACGAGTCACCACTTACATCACGCCCATGCATACATATCCGGCTGTGT
ACCAGAGACGATGCAGGAAGAGTCTCCTTCTTTTAGCGATGCGTATCGGG
CCCCGACAGCAATGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGG
CGGCCATGGCGTTTCGAAAACCGTTCATCAAACTGCAGCATCTTGCTCGC
GTGTAGTAGCATGGTGTACTGCTGCAGCAGCAGCGGCAGCAATGGTTGTC
TTCCTGCGCAAGCCTTCGTCGCCTCGCCAGCAACACACCTACGATCTGCT
CCCGCGTTTGCTTTCCGTGGGCGTGGACGAGGAGGATCAACCACCTGGGC
CCCGGAGATGGCGTTCCCTGGTGAGAAACTGCTCCCGAAAGTAAGTGACT
ACCGCTGTAAAGTCATCATCATTTGAATGTTTGTTCATGTGGCAAAGCAA
ACTGCCTTGTAGAGCACTGGTGTATGCACAACCGACATAGTTTACTGCTG
TAGTATGCACACTGGAGTACGCTGCCCACCCAAGACTGCTGTCGCACAAG
CCTGCAGCAGTAGTGGGGCTGGACTGCGCGACCGATTGTGGATTGACTGC
TGCTGAACCCTTTGCGTGTTGTAACTGCTGCTGAAGATGATACACAGATT
ACTTGCCGGATCACAACTGCTGGTGTTATCTGTTATCTACACCGCCTGGT
GTGTAACTGCCGCAACAAGTAATTTGTTTGTTTCATCCACCGCGGCAACG
CGCTACAACCGGCTTGAAAAGACACCAAAGCGCGTGTGTGCGTGTATATG
TAGGAGGAGGGTGAGAGGCTACGTGTGAGCGCTGCTGTCGGTGGTGCTGC
TGCTGTACACCAATAACCAGTCACCGAAACTCGCGAAAGGCCCGTGTTTT
AGTGCACATGTAAAGAAGTCTACACTACTTCAAAGTCGCGAGGGAAGGAA
TTGCTGTACCCTCCTCGCGATAAGAGTATCTCAGGCAAGAACCGCAGGAG
GGGGTCCAACCCACCCCTCCTTTGTGACCCCGGTTGGGTCGTCTAGCTAG
TAGAAGTGGAGGATGGGGGCCAGAGGGGGCAGACGACAGAGTCCAATGAT
GGGAGAAAAAAAAAGCTACGTTATTAATAGTCGGTTGCTGAAAAGGTCTC
GCGGAGTAGGTTTCTGCAGCAAGGTATAGTGTACTGCTGTGTACAAATAA
GACTCAAAACGACATTCCGGATCCGAAAGTGTTCATCTTCGATACAAAAT
CGGCAGGAGACCATGGAGCAGTGACACGCGCGTTGGAGCAGTGACACGCG
CGTGGCACGCGACTCTGCACCTCTTTCCTTACATTCACCTCGAAGCTGTG
TGGAACTTGTCCCACCACAGACGCAGGTTATTGTTGCTTCCCTTTGTTCT
CTCTTCGAGGATGCTCTCCTATCGCCTAGCATATAAACCATGGAGCCGGA
ATCCAACACAAACCAGGCCCAAATGCACACTGACCAGAAGGGCAGAATGA
AACTGGAATCTTGCATGACGTCATACATAGCACAACATCCGATAAAACGC
ACATAACCATGGTAACGCACCATCACATGGCTACCTCCAAAAATCATGAC
ACCCAGATCTGTTTCTTTGGTCGTGCTGTCGAAGGCTGCAGCTGCGGTCG
TAACAGTCCGTAAATCTGGGTCCATTCCATTCACGGTCCACCACTGTCCT
ACGCACCGTCACAGACCCTTTCAATCTCAATACCCCTTAACTGTGAGTCT
TCCAAGGTAGCTTGTAGCGGTGTGAGCTACCGCTTATGCATACGACACGA
GGTAACGCACCGACGGAAGATAAGGTACGCACCCACAGAGTACAACACCC
GTTGATGTATTTTTATGAACAGCCAACAGTTGTTCCCCCGGGGGTGTAGT
ATCTTGTCTGGTATACGGCTGCTGTAGTTTACACCAGCGCTTCGGACGCT
GACAGAGACAAGAGACAAGTTCTAACCGCCGCTCGACGCGGCATCTTGGA
GGATCTTTCGTTTGTTCTTGTGCAGCACTTCCCACCGTGTCTTACGAATC
TTGTGTGTGATCGTTGGGTGCTTGCGCTTGCTGATTTCGTTTTCGAAATC
AGTCCATCATCAAGATCTCTCTTGACAACCCCCCTTGAAGCAAGCGGTGT
CTCTTAGACTGCCACGGAGAGTTAAGGGACTACATAGCAGTATCAAACGT
AAAGAGAGTTCACGTTTTTGTTCCACATGGTGAACATGGTGAAAAGCAGG
TGTGAGTTTGATCCGTGCAGGTAATTCTGACAGTCTACGGTAGTGACCGG
GTGCGCATGCAACTTCATACCTACTCTTTCGCTGTGCAGATGGTAGCGAC
GACCACCCGACAAACCGGTGCTGCTCCTCCTGGGAGTGGCCGTTTAAGAC
TCATGCCCTGAAAGATGAAAATAACATGCCAGTAAGCAGAAGCTCTCGTC
TTTTTCCCTGTTCGATTATTTCCCTAGACCTATATTCCGCAAAGACCGTT
GGGTTCGGTATCCCCATTGGGTAATATGCGTGCACGCGCGACACCCCTTT
TATCACGAAAACCTGCAGCGGGGGGGCGTCGGTGCTTCGACACCGGGCTG
GCCTTCACGCGACAGCAGATGATCGACATGGGTCTCGTGCCGCCAGAGGG
GGCCGAGCAAGAGGCACAAGACCTGCTACTATCGCGCCCCCCCTCCACGG
AGGGGAAGGAGGGCGCAGGAGGTCATCCGGCGGCAATGGCTGATGACACC
GAGGAGCCGGCGGAGGCTGTAGGCCTAATCGGGCACTTCGAGGCCTCGCG
CCTCTTGGCCCAGAAGGGCAAGGCGGGGACCTTCGTGGGATCGTTGGACA
TGAGCATGACGGAGCGGGAGCTCGTCTCGACGGAGGAGGGTGTCGGTGAG
GGTATACAAATAGGGTTGTTCTGCTTTTTTGCGTGACATCCGCGGCCTTG
CACCGATGGTGGCGGTGATCCGTAAAAAGGCGTTTTTTCTTCCTTCTTGT
TGTCGGTGCAGGTGTAAACTCGACGCAGTTGCTGCAGGCGATGTGTGCAT
G
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12640:941..4091+

>mRNA_Ecto-sp13_S_contig12640.2187.1 ID=mRNA_Ecto-sp13_S_contig12640.2187.1|Name=mRNA_Ecto-sp13_S_contig12640.2187.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12640:941..4091+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGGAAGAGTCTCCTTCTTTTAGCGATGCGTATCGGGCCCCGACAGC
AATGCGGCGGCAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCCATGGC
GTTTCGAAAACCGTTCATCAAACTGCAGCATCTTGCTCGCGTGTAGTAGC
ATGGTGTACTGCTGCAGCAGCAGCGGCAGCAATGGTTGTCTTCCTGCGCA
AGCCTTCGTCGCCTCGCCAGCAACACACCTACGATCTGCTCCCGCGTTTG
CTTTCCGTGGGCGTGGACGAGGAGGATCAACCACCTGGGCCCCGGAGATG
GCGTTCCCTGCGGGGGGGCGTCGGTGCTTCGACACCGGGCTGGCCTTCAC
GCGACAGCAGATGATCGACATGGGTCTCGTGCCGCCAGAGGGGGCCGAGC
AAGAGGCACAAGACCTGCTACTATCGCGCCCCCCCTCCACGGAGGGGAAG
GAGGGCGCAGGAGGTCATCCGGCGGCAATGGCTGATGACACCGAGGAGCC
GGCGGAGGCTGTAGGCCTAATCGGGCACTTCGAGGCCTCGCGCCTCTTGG
CCCAGAAGGGCAAGGCGGGGACCTTCGTGGGATCGTTGGACATGAGCATG
ACGGAGCGGGAGCTCGTCTCGACGGAGGAGGGTGTCGGTGAGGGTATACA
AATAGGGTTGTTCTGCTTTTTTGCGTGA
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