mRNA_Ecto-sp13_S_contig12596.2143.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12596.2143.1
Unique NamemRNA_Ecto-sp13_S_contig12596.2143.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12596.2143.1 vs. uniprot
Match: D8LG76_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG76_ECTSI)

HSP 1 Score: 384 bits (986), Expect = 2.400e-130
Identity = 208/227 (91.63%), Postives = 210/227 (92.51%), Query Frame = 1 
Query:  193 TAARSAYSSGGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTGTYDHDTAAGGSMASFQGGGGDSGRGHRRPGSGLSDAPSPGQRMLGYHEGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSGVRGGDGCRVGFPGVRACV 873
            TAARSAYSSGGTVQSGRHGTSPVVREVDVYD VSSEASMSSAGTEAASRVQSE+TGTYDHDTAAGGS  SFQ GGGDSGRGHRRPGSG S APSPGQRMLGY + YGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGA AGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSGVRGG     GF   RACV
Sbjct:   76 TAARSAYSSGGTVQSGRHGTSPVVREVDVYDDVSSEASMSSAGTEAASRVQSEVTGTYDHDTAAGGSTTSFQAGGGDSGRGHRRPGSGASGAPSPGQRMLGYQQAYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGALAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSGVRGGVVAEFGF---RACV 299
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BLAST of mRNA_Ecto-sp13_S_contig12596.2143.1 vs. uniprot
Match: A0A6H5KYK9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYK9_9PHAE)

HSP 1 Score: 355 bits (910), Expect = 1.240e-107
Identity = 193/208 (92.79%), Postives = 195/208 (93.75%), Query Frame = 1 
Query:  193 TAARSAYSSGGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTGT--YDHDTAAGGSMASFQGGGGDSGRGHRRPGSGLSDAPSPGQRMLGYHEGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAGGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRG 810
            TAARSAYSSGGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMT T  YDHDTAAGGS ASFQGGGGDSGR HRRPG G+   PSP Q MLGY +GYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASA GGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRG
Sbjct: 2317 TAARSAYSSGGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTSTSTYDHDTAAGGSTASFQGGGGDSGRAHRRPGPGVRVPPSPSQPMLGYQQGYGSSRSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAEGGIERVLSGETTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRG 2524
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12596.2143.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG76_ECTSI2.400e-13091.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KYK9_9PHAE1.240e-10792.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12596contigEcto-sp13_S_contig12596:1588..3015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size986
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-17_004020.1
Cds size828
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.797502-UTR-Ecto-sp13_S_contig12596:1587..16561681462671.797502-UTR-Ecto-sp13_S_contig12596:1587..1656Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12596 1588..1656 +
1681462671.8385746-UTR-Ecto-sp13_S_contig12596:2926..30151681462671.8385746-UTR-Ecto-sp13_S_contig12596:2926..3015Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12596 2927..3015 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.812831-CDS-Ecto-sp13_S_contig12596:1656..23951681462671.812831-CDS-Ecto-sp13_S_contig12596:1656..2395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12596 1657..2395 +
1681462671.8236868-CDS-Ecto-sp13_S_contig12596:2837..29261681462671.8236868-CDS-Ecto-sp13_S_contig12596:2837..2926Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12596 2838..2926 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12596.2143.1prot_Ecto-sp13_S_contig12596.2143.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12596 1657..2926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12596.2143.1

>prot_Ecto-sp13_S_contig12596.2143.1 ID=prot_Ecto-sp13_S_contig12596.2143.1|Name=mRNA_Ecto-sp13_S_contig12596.2143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=276bp
MSSPSESDGSSAWNDTDAQSSNPPAFGGGGGGGNYAAAQFTTAARSAYSS
GGTVQSGRHGTSPVVREVDVYDGVSSEASMSSAGTEAASRVQSEMTGTYD
HDTAAGGSMASFQGGGGDSGRGHRRPGSGLSDAPSPGQRMLGYHEGYGSS
RSSIVSRVAGAESEMGSHRLVPPQDSWQNSPGPGGGASAGGGIERVLSGE
TTDSSILEQQARDRHGSGQQEDGDFGRVWLADRAHARQFDDADEDRGRSG
VRGGDGCRVGFPGVRACVTIKRVVH*
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mRNA from alignment at Ecto-sp13_S_contig12596:1588..3015+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12596.2143.1 ID=mRNA_Ecto-sp13_S_contig12596.2143.1|Name=mRNA_Ecto-sp13_S_contig12596.2143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1428bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12596:1588..3015+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGCTCGGATGTCGACGACGACGATGGCGGCGGCGGGCAGGACAGCGGCTC
CGGCGCAAGGGGCGCCGCGATGTCGTCCCCGTCGGAGAGCGATGGGTCCT
CGGCGTGGAACGACACGGACGCGCAGTCGTCGAACCCCCCGGCCTTCGGC
GGCGGCGGTGGTGGCGGAAACTACGCGGCGGCGCAGTTCACGACCGCCGC
GAGGTCGGCGTACTCGTCCGGGGGCACCGTGCAATCGGGCAGACACGGCA
CTTCCCCCGTGGTGCGGGAGGTAGACGTGTATGATGGCGTGTCGTCGGAG
GCGTCCATGTCGTCCGCAGGCACGGAGGCCGCGTCGAGGGTGCAGAGCGA
GATGACGGGCACGTACGACCACGACACGGCGGCCGGCGGTAGCATGGCCT
CCTTCCAGGGCGGAGGCGGCGACAGCGGCCGCGGCCACCGCCGCCCAGGG
TCCGGCCTTAGCGACGCCCCCTCCCCGGGCCAGCGCATGCTGGGCTACCA
CGAAGGGTACGGCTCCTCGAGGTCCTCGATAGTGTCGAGGGTGGCCGGGG
CGGAGTCGGAGATGGGTTCTCACCGCCTGGTTCCCCCGCAGGACAGCTGG
CAGAACTCGCCGGGACCCGGGGGCGGGGCGTCGGCGGGGGGTGGGATCGA
GCGGGTGCTATCCGGGGAGACGACGGACTCCAGCATCCTGGAGCAGCAGG
CGAGGGACAGACACGGCAGCGGTCAGCAGGAGGACGGGGACTTTGGTAGG
GTATGGCTGGCTGATCGAGCGCACGCGAGACAGTTCGATGATGCAGACGA
GGATCGGGGTTGAAAGGATTTTACAGAAGTAGGATTTTTTTCTCTCGTCT
CCATTCCTGCTCTCTTTTTTGGGCTTGGACTTGATTTTCCGTACTTTTTT
TGTTTTTTGTAGTTTGAGACACGCGAAGAGAAGAACAGAGCTGGCCAGAA
GGTGCCAGGCAGTGATCGTGTGATGACGTCGAAGAAAGTTTGCGGAGCGC
GCTCTTTCAGCTCGCGGCTTCATGACGTAGCGTAGCGGGCTGATGTTTTC
AATGTTGCGGCCTTAGTTCCCGCTGAGAAAATAGCCGTCGGTGGTGTTCT
CCTCTGGTTTGCTCTGCCGTTCTACCTGCAAGAGGCGGGTTGGACAGGGG
CGTTTGGGAGAAGACGAGTAGTCAGTCCTTTTGTGTCAGGCCGTTATAAT
CATGGCCTCGTTTTGCTTGGTGTTGTATTTGTCTTCTTGTCCGTGTTGAG
GTCGGTCGGGTGTCCGAGGGGGGGATGGTTGCAGAGTTGGGTTTCCGGGC
GTGCGTGCTTGCGTTACAATCAAACGAGTCGTCCATTAGCGAATCGACAG
CAGGCACCTGCAAGAAAAATAAAAGAAGAAACACAAGCAAGTCGGCGACG
CTACGCCGTCTGGGCACTCGTGGCGTTT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12596:1588..3015+

>mRNA_Ecto-sp13_S_contig12596.2143.1 ID=mRNA_Ecto-sp13_S_contig12596.2143.1|Name=mRNA_Ecto-sp13_S_contig12596.2143.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=828bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12596:1588..3015+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGTCCCCGTCGGAGAGCGATGGGTCCTCGGCGTGGAACGACACGGA
CGCGCAGTCGTCGAACCCCCCGGCCTTCGGCGGCGGCGGTGGTGGCGGAA
ACTACGCGGCGGCGCAGTTCACGACCGCCGCGAGGTCGGCGTACTCGTCC
GGGGGCACCGTGCAATCGGGCAGACACGGCACTTCCCCCGTGGTGCGGGA
GGTAGACGTGTATGATGGCGTGTCGTCGGAGGCGTCCATGTCGTCCGCAG
GCACGGAGGCCGCGTCGAGGGTGCAGAGCGAGATGACGGGCACGTACGAC
CACGACACGGCGGCCGGCGGTAGCATGGCCTCCTTCCAGGGCGGAGGCGG
CGACAGCGGCCGCGGCCACCGCCGCCCAGGGTCCGGCCTTAGCGACGCCC
CCTCCCCGGGCCAGCGCATGCTGGGCTACCACGAAGGGTACGGCTCCTCG
AGGTCCTCGATAGTGTCGAGGGTGGCCGGGGCGGAGTCGGAGATGGGTTC
TCACCGCCTGGTTCCCCCGCAGGACAGCTGGCAGAACTCGCCGGGACCCG
GGGGCGGGGCGTCGGCGGGGGGTGGGATCGAGCGGGTGCTATCCGGGGAG
ACGACGGACTCCAGCATCCTGGAGCAGCAGGCGAGGGACAGACACGGCAG
CGGTCAGCAGGAGGACGGGGACTTTGGTAGGGTATGGCTGGCTGATCGAG
CGCACGCGAGACAGTTCGATGATGCAGACGAGGATCGGGGTCGGTCGGGT
GTCCGAGGGGGGGATGGTTGCAGAGTTGGGTTTCCGGGCGTGCGTGCTTG
CGTTACAATCAAACGAGTCGTCCATTAG
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