mRNA_Ecto-sp13_S_contig12595.2142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12595.2142.1
Unique NamemRNA_Ecto-sp13_S_contig12595.2142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: D7FNX5_ECTSI (CRAL-TRIO domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX5_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 9.720e-76
Identity = 119/120 (99.17%), Postives = 119/120 (99.17%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLSSNW 360
            DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAA LVDNRQRKRVLLLSSNW
Sbjct:  265 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAARLVDNRQRKRVLLLSSNW 384
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A835Z1B7_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1B7_9STRA)

HSP 1 Score: 143 bits (360), Expect = 2.970e-35
Identity = 58/113 (51.33%), Postives = 85/113 (75.22%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRV 339
            D +G PT+ LR + H+PG +D  +F RY ++L+E+GR+ WG+G+  Q N++VDRV +G+ NQDP LL+ MLP+FRD YP+I+ R Y+AP++W+F  +W +A  LVD RQR RV
Sbjct:  387 DSEGLPTLCLRGVHHHPGVLDPSKFMRYLVYLVEKGRREWGVGSHYQANMVVDRVDSGLHNQDPELLKVMLPIFRDNYPEIIHRAYIAPSNWVFMLIWAVARVLVDARQRARV 499
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A7S0LX31_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0LX31_9CRYP)

HSP 1 Score: 111 bits (277), Expect = 7.000e-24
Identity = 54/122 (44.26%), Postives = 75/122 (61.48%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLSSNWCG 366
            DK GRP ++ RS  H PG ID + F RY +   E+ R  + LG   Q  +IVDR+G+G+KNQDP LL+ +LPV  + YP+ V   YVAP S +F  +W I   L+D+  R+R  LL  ++ G
Sbjct:  330 DKLGRPVLLYRSALHKPGKIDPQRFTRYVIQQTERARLQYRLGTEVQSIVIVDRIGSGLKNQDPALLKVLLPVIVEHYPEYVGFAYVAPISVVFNVIWKIIQLLLDDAARQRFFLLQGDYTG 451
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A7S0F3A4_9CRYP (Hypothetical protein n=1 Tax=Hanusia phi TaxID=3032 RepID=A0A7S0F3A4_9CRYP)

HSP 1 Score: 110 bits (276), Expect = 2.430e-23
Identity = 52/119 (43.70%), Postives = 76/119 (63.87%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLSSN 357
            DK GRP +V R+  H PG ID + + RY +  +EQGR+ +GLG   Q  ++VDR+G+G+KNQDP LL+ +LP F   +P IV   Y+AP + +F FVW + + L+D   +  V LL  +
Sbjct:  598 DKAGRPILVYRAATHVPGKIDEKLYCRYVVQRVEQGRKKYGLGKNVQACVVVDRIGSGLKNQDPALLRELLPCFTTHFPGIVGNIYIAPVNNVFFFVWSLLSLLLDEDTKNSVKLLGKS 716
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A7S4ULM1_GUITH (Hypothetical protein n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4ULM1_GUITH)

HSP 1 Score: 108 bits (271), Expect = 5.570e-23
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLL 348
            DK GRP +V R+ +H PG I+ + + RY +  +EQGR+ +GLG   Q  ++VDR+G+G+KNQDP LL+ +LP F   +P IV   Y+AP + +F FVW + + L+D   +  V LL
Sbjct:  340 DKAGRPILVYRAASHVPGKINEKLYCRYVVQRVEQGRKKYGLGKNVQACVVVDRIGSGLKNQDPALLRELLPCFTTHFPGIVGNIYIAPVNNVFFFVWSLLSLLLDEDTKNSVKLL 455
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A7S4PA60_GUITH (Hypothetical protein n=2 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4PA60_GUITH)

HSP 1 Score: 108 bits (271), Expect = 1.110e-22
Identity = 51/116 (43.97%), Postives = 76/116 (65.52%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLL 348
            DK GRP +V R+ +H PG I+ + + RY +  +EQGR+ +GLG   Q  ++VDR+G+G+KNQDP LL+ +LP F   +P IV   Y+AP + +F FVW + + L+D   +  V LL
Sbjct:  603 DKAGRPILVYRAASHVPGKINEKLYCRYVVQRVEQGRKKYGLGKNVQACVVVDRIGSGLKNQDPALLRELLPCFTTHFPGIVGNIYIAPVNNVFFFVWSLLSLLLDEDTKNSVKLL 718
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: K8YSK8_NANGC (Sec14p-like phosphatidylinositol transfer family protein n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YSK8_NANGC)

HSP 1 Score: 107 bits (267), Expect = 3.980e-22
Identity = 45/118 (38.14%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLSS 354
            D++G P +V R+  H PG   +EE+  Y L+L+E+GR+L+GLG   Q++ +VDR G G+ NQDP ++ +++PV +  YP+ + + ++AP + IF+F+W +   ++      RV LLS+
Sbjct:  627 DREGDPVLVFRTALHQPGRFTTEEYLAYLLYLIEKGRELYGLGQRTQISFLVDRKGGGLANQDPKVVLALVPVLQAHYPECLKKTFIAPVNVIFQFIWKVFTLVLAKDTANRVRLLSA 744
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A4D9D201_9STRA (CRAL-TRIO domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D201_9STRA)

HSP 1 Score: 107 bits (266), Expect = 5.260e-22
Identity = 45/118 (38.14%), Postives = 78/118 (66.10%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLSS 354
            D++G P +V R+  H PG   +EE+  Y L+L+E+GR+L+GLG   Q++ +VDR G G+ NQDP ++ +++PV +  YP+ + + ++AP + IF+F+W +   ++      RV LLS+
Sbjct:  681 DREGDPVLVFRTALHQPGRFTTEEYLAYLLYLIEKGRELYGLGQRTQISFLVDRKGGGLANQDPKVVLALVPVLQAHYPECLKKTFIAPVNVIFQFIWKVFTLVLAKDTADRVRLLSA 798
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A7S2F3B8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F3B8_9STRA)

HSP 1 Score: 87.4 bits (215), Expect = 1.640e-17
Identity = 36/92 (39.13%), Postives = 58/92 (63.04%), Query Frame = 1 
Query:   76 QRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLS 351
            + Y+++L+E  R  WG+G      ++VDRVG+G+KN DPLL+   LP  +  YP+IV R ++ P +W+F  +W I   L+  R R+R  L++
Sbjct:    2 EEYWVYLMEYARNAWGVGECMGFELLVDRVGSGLKNNDPLLVSYALPRAQSHYPEIVERVFIGPINWVFWLIWRICRLLLQERVRQRFELIT 93
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BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Match: A0A4D9D2X2_9STRA (CRAL-TRIO domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2X2_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 3.770e-9
Identity = 37/120 (30.83%), Postives = 64/120 (53.33%), Query Frame = 1 
Query:    1 DKDGRPTMVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGAGIKNQDPLLL---QSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDNRQRKRVLLLS 351
            DK GRP +   +  H   A +++   R  + LLE+        A   + +I+D+ G G KN D  L      ++ + ++ YP+ +  CY+  TSWIFR +W I +P +D + R++V +L+
Sbjct:  190 DKQGRPCIYALNRNHIIDAENNDSNLRTIVNLLEKTTVESTRTADGFIAVIIDQEGVGRKNMDTNLFVGKPGLVQILQEYYPERLGSCYILHTSWIFRLMWAIISPFLDEKTRRKVHVLA 309
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12595.2142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
D7FNX5_ECTSI9.720e-7699.17CRAL-TRIO domain-containing protein n=1 Tax=Ectoca... [more]
A0A835Z1B7_9STRA2.970e-3551.33CRAL-TRIO domain-containing protein n=1 Tax=Tribon... [more]
A0A7S0LX31_9CRYP7.000e-2444.26Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A7S0F3A4_9CRYP2.430e-2343.70Hypothetical protein n=1 Tax=Hanusia phi TaxID=303... [more]
A0A7S4ULM1_GUITH5.570e-2343.97Hypothetical protein n=1 Tax=Guillardia theta TaxI... [more]
A0A7S4PA60_GUITH1.110e-2243.97Hypothetical protein n=2 Tax=Guillardia theta TaxI... [more]
K8YSK8_NANGC3.980e-2238.14Sec14p-like phosphatidylinositol transfer family p... [more]
A0A4D9D201_9STRA5.260e-2238.14CRAL-TRIO domain-containing protein n=2 Tax=Monodo... [more]
A0A7S2F3B8_9STRA1.640e-1739.13Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9D2X2_9STRA3.770e-930.83CRAL-TRIO domain-containing protein n=1 Tax=Nannoc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12595contigEcto-sp13_S_contig12595:1369..3108 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score232.3
Seed ortholog evalue1.4e-58
Seed eggNOG ortholog2880.D7FNX5
Model size950
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.intermembrane phospholipid transfer
EggNOG OGsKOG1470@1,KOG1470@2759
Cds size399
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12595.2142.1prot_Ecto-sp13_S_contig12595.2142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12595 1390..2562 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.7106369-UTR-Ecto-sp13_S_contig12595:1368..13891681462671.7106369-UTR-Ecto-sp13_S_contig12595:1368..1389Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12595 1369..1389 +
1681462671.7515755-UTR-Ecto-sp13_S_contig12595:2562..27711681462671.7515755-UTR-Ecto-sp13_S_contig12595:2562..2771Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12595 2563..2771 +
1681462671.7620277-UTR-Ecto-sp13_S_contig12595:2787..31081681462671.7620277-UTR-Ecto-sp13_S_contig12595:2787..3108Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12595 2788..3108 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462671.7220254-CDS-Ecto-sp13_S_contig12595:1389..14731681462671.7220254-CDS-Ecto-sp13_S_contig12595:1389..1473Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12595 1390..1473 +
1681462671.7324438-CDS-Ecto-sp13_S_contig12595:1776..19221681462671.7324438-CDS-Ecto-sp13_S_contig12595:1776..1922Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12595 1777..1922 +
1681462671.7420495-CDS-Ecto-sp13_S_contig12595:2393..25621681462671.7420495-CDS-Ecto-sp13_S_contig12595:2393..2562Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12595 2394..2562 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12595.2142.1

>prot_Ecto-sp13_S_contig12595.2142.1 ID=prot_Ecto-sp13_S_contig12595.2142.1|Name=mRNA_Ecto-sp13_S_contig12595.2142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MVLRSIAHNPGAIDSEEFQRYFLFLLEQGRQLWGLGAVQQLNIIVDRVGA
GIKNQDPLLLQSMLPVFRDAYPDIVFRCYVAPTSWIFRFVWIIAAPLVDN
RQRKRVLLLSSNWCGVAGVVGSVAVFYRSSYK*
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mRNA from alignment at Ecto-sp13_S_contig12595:1369..3108+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12595.2142.1 ID=mRNA_Ecto-sp13_S_contig12595.2142.1|Name=mRNA_Ecto-sp13_S_contig12595.2142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1740bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12595:1369..3108+ (Ectocarpus species13 EcNAP12_S_4_19m)
GATAAGGATGGAAGGCCTACCATGGTGCTTCGAAGCATTGCGCACAACCC
CGGCGCCATCGACTCCGAGGAGTTTCAGCGGTACTTTCTGTTTTTGCTGG
AGCAGGTGCGGAAAAATTTAGATTGTGATTCCATGCGAAAAAGTCATCGT
CCTCCTCGGCACTACATTTTTTCATTTTTAGAACTTATAGATACCGTACT
CTCCCCAGAGAACAAACTGCCAGCTGGAACGGATAGAGTTCTCATCAAGA
CGCGGCTGGAACGGATAGAATTCTCATTAAGACGCGAGTACTTTCGACCT
CATGATTTCGCGTCGCCGTATTTTGTTGGTATTATTCTCCTCTCGCGGGG
ATTCTTGACTCTCTTCTGTGCCGGTCGTTCCTGTCACCATCGGGGGGGCG
AAAATCAGGGGAGACAGCTGTGGGGGCTAGGGGCCGTCCAGCAGCTGAAC
ATCATCGTTGATCGGGTCGGCGCCGGTATCAAGAATCAGGACCCGCTGTT
GCTGCAGTCCATGCTGCCGGTGTTTCGAGACGCATACCCCGACATTGTCT
TCCGGTGAGGCAACCGACCTGGTTAGGATCCGGTCTCAGAAGCAAGGCCG
GACGCAAACCAATTTTTTTATCCCTTCATTGGGCATATTGTTCGTTGGGC
ACAGGCAGCGAACGGGGGCGACGGAACATGATGCACCCGGTAGATAGCCA
CCCGAAGAAAACATGGCCGGAAATGTGAACCCCAAGAAAACGCGTGACGT
TATGATGATTTTTCGCCCGAAGTGTAGATTATTGCCGGGTTATTGGCCCC
ACCAGAAAAATCAGACAGTGTTGAAATGGGTTTGCGACTGAATGGCTGGA
ACACCGCACAGTTTACAAGGACTAAGACATTGGACTCTAAAGTAAGGTTA
CCGATGAGTGTGCCACACCTCTTCATAGGGAGCGATATGGGTAAAAGTCA
CATGTCGGGGAAAAGTCAACATGCTTCGGTCTACAAAACGTGCATCAAGA
GAGCTCAATTTGTGATCGGCCTCAGGTGCTACGTGGCGCCGACCAGCTGG
ATTTTTCGCTTTGTGTGGATCATCGCAGCGCCGCTGGTCGACAACCGGCA
GCGGAAGCGGGTGCTCTTGTTGAGCTCGAACTGGTGCGGTGTTGCCGGAG
TTGTGGGGAGCGTGGCCGTTTTTTATCGGTCCAGCTACAAGTGAAGCGTG
ACATTGTGGCCTGTCCTGTTTGTTCCTGTGGCAATGTTGATGAGTCGCTA
GAGCTTGCACAGTTCGTAGGTGCGGAAAACTTGAGGATGTGGGTCGTTTT
TCTCGCAACCGAACGGCAAATAGGAGTACGGCAACCATCCCTCAGTCAGA
GACCTATATGTCTACTCTGTCTATGATTATCTAGTCGGTGGTGTGGAGCA
ACGCATTTACCCATTTACCCATTTACCCATTTACCCATTTACTCCGTGTA
GGTCACTCAGAAGAAACAAGTCGTCCTCTGACGCGCCTTTTTATGCACCG
TGCCAACAACAGCAAAAGAGGGGCATTGATACACGATTGCACGAACCGAA
CCATTTTTCGCTGCGAGTTATCTCCTTACTGAGTTCGAGGTCGAGATTCA
CGCCCCTTTCCCCACGACCGCCACACTCTTTAATGGAACCCTGCGGCGAC
AACAACAACAGGCAAGAGCGTCTGCTGGAAGACTTCGATGCGTCTGTCCT
TCCGCCACACCTCGGAGGCACGATGGTGAACTACCCTCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12595:1369..3108+

>mRNA_Ecto-sp13_S_contig12595.2142.1 ID=mRNA_Ecto-sp13_S_contig12595.2142.1|Name=mRNA_Ecto-sp13_S_contig12595.2142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12595:1369..3108+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGTGCTTCGAAGCATTGCGCACAACCCCGGCGCCATCGACTCCGAGGA
GTTTCAGCGGTACTTTCTGTTTTTGCTGGAGCAGGGGAGACAGCTGTGGG
GGCTAGGGGCCGTCCAGCAGCTGAACATCATCGTTGATCGGGTCGGCGCC
GGTATCAAGAATCAGGACCCGCTGTTGCTGCAGTCCATGCTGCCGGTGTT
TCGAGACGCATACCCCGACATTGTCTTCCGGTGCTACGTGGCGCCGACCA
GCTGGATTTTTCGCTTTGTGTGGATCATCGCAGCGCCGCTGGTCGACAAC
CGGCAGCGGAAGCGGGTGCTCTTGTTGAGCTCGAACTGGTGCGGTGTTGC
CGGAGTTGTGGGGAGCGTGGCCGTTTTTTATCGGTCCAGCTACAAGTGA
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