mRNA_Ecto-sp13_S_contig12552.2114.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12552.2114.1
Unique NamemRNA_Ecto-sp13_S_contig12552.2114.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12552.2114.1 vs. uniprot
Match: A0A6H5LCA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LCA0_9PHAE)

HSP 1 Score: 207 bits (527), Expect = 3.380e-63
Identity = 177/228 (77.63%), Postives = 180/228 (78.95%), Query Frame = 1 
Query:    1 MSGSQWEALPQRARKRRPAASASATPAVENAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQHDPCRGNASSLVSGGGNACSLAKPTGGATPVDGSVVRDDGRGREDDWVVEGRGSAEDGGGEGGDKAAAVAARHAAVTAEVDARSKIKRFSGGLEGGAGADGGAEGANFEYLD 684
            MS SQWEALPQRARKRRPA +ASATPAV N XXXXXXXXXXXXXXXXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXX                               DQHDPCRGNASSLVS G NACSLAKPTG ATPVDG VVRDDGRGREDD VVEGRGSAED GG+GGDKAAAVAARHAAVTAEVDARSKIKRFSGGLEGGAGADGGAEGANFE+ D
Sbjct:    1 MSSSQWEALPQRARKRRPATAASATPAVGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXLASVTRXXXXXXXXXXXXXXXXXXXLVPVVGVAEGGHGNQQPRRTSSGGPKESGGRDQHDPCRGNASSLVSVGDNACSLAKPTGAATPVDGGVVRDDGRGREDDRVVEGRGSAEDTGGKGGDKAAAVAARHAAVTAEVDARSKIKRFSGGLEGGAGADGGAEGANFEWGD 228
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BLAST of mRNA_Ecto-sp13_S_contig12552.2114.1 vs. uniprot
Match: D8LMN9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMN9_ECTSI)

HSP 1 Score: 105 bits (261), Expect = 3.170e-24
Identity = 59/78 (75.64%), Postives = 59/78 (75.64%), Query Frame = 1 
Query:  475 REDDWVVEGRGSAEDGGGEGGDKAAAVAARHAAVTAEVDARSKIKRFSGGLEGGAGADGGAEGANFEYLDHTADVQLH 708
            REDD V EGRGSA D              RHAAV AEVDARSKI RFSGGLEGGAGADGGAEGANFEYLDHTADVQLH
Sbjct:  105 REDDRVAEGRGSAADSXXXXXXXXXXXXXRHAAVAAEVDARSKIPRFSGGLEGGAGADGGAEGANFEYLDHTADVQLH 182
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12552.2114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LCA0_9PHAE3.380e-6377.63Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMN9_ECTSI3.170e-2475.64Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12552contigEcto-sp13_S_contig12552:3081..5011 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size708
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-02_002510.1
Cds size708
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.307616-CDS-Ecto-sp13_S_contig12552:3080..31621681462669.307616-CDS-Ecto-sp13_S_contig12552:3080..3162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12552 3081..3162 +
1681462669.322044-CDS-Ecto-sp13_S_contig12552:3559..41531681462669.322044-CDS-Ecto-sp13_S_contig12552:3559..4153Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12552 3560..4153 +
1681462669.3386583-CDS-Ecto-sp13_S_contig12552:4979..50111681462669.3386583-CDS-Ecto-sp13_S_contig12552:4979..5011Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12552 4980..5011 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12552.2114.1prot_Ecto-sp13_S_contig12552.2114.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12552 3081..5011 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12552.2114.1

>prot_Ecto-sp13_S_contig12552.2114.1 ID=prot_Ecto-sp13_S_contig12552.2114.1|Name=mRNA_Ecto-sp13_S_contig12552.2114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=236bp
MSGSQWEALPQRARKRRPAASASATPAVENAPPQPPPPDQQRQREEKVAS
AAPPAPPKLAAVARATPASGAAAAAAAATVAAGLVPVAGVAEGGHGNQQP
RRTSSGGREESGGGDQHDPCRGNASSLVSGGGNACSLAKPTGGATPVDGS
VVRDDGRGREDDWVVEGRGSAEDGGGEGGDKAAAVAARHAAVTAEVDARS
KIKRFSGGLEGGAGADGGAEGANFEYLDHTADVQLH
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mRNA from alignment at Ecto-sp13_S_contig12552:3081..5011+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12552.2114.1 ID=mRNA_Ecto-sp13_S_contig12552.2114.1|Name=mRNA_Ecto-sp13_S_contig12552.2114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1931bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12552:3081..5011+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCAGCCAATGGGAAGCTCTTCCACAGAGAGCAAGAAAGCGCCG
GCCGGCCGCGTCTGCTAGTGCCACTCCGGCAGGTGTGACTAACTCTCCTC
ACGCTCGCAACGCCGAGACACACGTGCGCGACGGCATGGTACATACTTTG
CGGAATTGTGTGTTGGCTTAGAACATGTAGGCTGTCTCTGCTGGGCTTGT
AAACCCGCCAACCTTCGCTCCCCCTGCCATAGCGATGGAGATCGCTTGGG
GTGTGTCGCGTATTAGATGCCACGAGATTCAATCTCCGACTTTTATGGGT
GCGTATCCCCCTACTTCTGTTGCCGCCGCTGTTGGTGTTGGTGTGATGGT
GTGACGGGCTTGCGCTGAACTTTGCTGCAGAGTGTTGGGTCCTTGAGGCA
TTCCACACGCTCTCCCCCGCTCCCGATCGTTCCGATTATTTTCCGTTTGA
ATTTCGTGGCGGATGGCGAACTGCCGCAGTCGAGAATGCTCCGCCTCAGC
CTCCCCCACCAGACCAGCAGCGGCAGCGGGAGGAGAAGGTTGCTTCAGCG
GCGCCACCAGCACCACCAAAGCTGGCGGCGGTAGCACGAGCAACACCAGC
ATCGGGAGCGGCCGCGGCAGCAGCGGCCGCAACGGTAGCTGCAGGCTTGG
TTCCGGTTGCTGGCGTCGCCGAAGGCGGCCACGGCAACCAACAGCCTCGA
CGGACCTCCAGTGGTGGGCGCGAGGAGAGCGGAGGAGGAGACCAGCACGA
TCCATGCCGCGGTAACGCTTCGTCCCTAGTCAGCGGCGGCGGTAACGCTT
GTTCTCTAGCAAAACCCACCGGCGGCGCCACTCCCGTCGACGGGAGTGTT
GTCCGTGATGACGGCCGTGGGAGGGAAGATGATTGGGTGGTGGAGGGAAG
GGGATCCGCAGAGGACGGTGGGGGGGAGGGGGGGGACAAGGCAGCGGCCG
TAGCAGCGCGGCACGCCGCCGTGACGGCGGAAGTGGACGCGAGGTCGAAA
ATCAAGCGGTTTTCGGGAGGGCTGGAGGGCGGTGCCGGCGCGGACGGGGG
CGCGGAGGGGGCCAACTTCGAGTGTGAGCATTCATGCACATTACGTTTTG
GAAGAACGCCCCATGTGTCTTGCGAACACCCGTAACGTGATTCGGAGAAG
CGGCCCAGCGTCCTGTAGTCGAATGTCTTTCGGGCTTCTTGCCACAACGG
CGTGGAGCTTACAGGTGCTGCGGCGCGCTGATGCTCTCCCCCCCGCCCCC
CTCCCTCCACACTGGCGGCTTGCACCTCCCCCCAAGGAGATTCGGGACGA
AACAAGTGTTCGCCGCCGCGCACATTGGCTCACACTTTTCCCGAACAGAT
TTTTTAACCTTCTTTCTCTTTATGTGCATCTCTATCGCCTTGTTTTGTAG
AACGAAGCTGTGGATATTATTGCCCCTTGTTTGATGGATAATATCTGTGG
ACGTGCCCTTCAAAGAGCGAAACATCTCCGAAACGTAGGTTTGGACCGAT
TCCCTCAATCCACACATCTACCTGGTGTTTGTTCTTGCTGCCCGTCCGGC
CGCTTGCGCGGAAACAGATAGCCCGCCCTTCATGACGGGCGGCAATATTA
TTCCCCGGGAATGCCTCTCTCACGCTTGCTTCTCATCGCCAAGAAACGAG
ATTTTCCACCTCTCGCCACACTCATGTAGTCGCCTGCTGCCTGACTGCGC
GGGCAGCGAGGTGCTCACTTTTGATTAATATACGGTGCGTATTTCACCAC
ACGTTTGTGTGTAACTGGAAGAAGTGGATCGATTTCGTTCTTGTCCTCCT
CTTGGCTCTTGTGTTGACTCATACGTCTCCGTTCACGCCCCCCCCCTCCT
CACCCGTCCCCCTACGCCGCCGCCGCTCTGGCACTTGCTTGCACATCAGA
TTTGGACCATACGGCCGACGTCCAGCTTCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12552:3081..5011+

>mRNA_Ecto-sp13_S_contig12552.2114.1 ID=mRNA_Ecto-sp13_S_contig12552.2114.1|Name=mRNA_Ecto-sp13_S_contig12552.2114.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=708bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12552:3081..5011+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCGGCAGCCAATGGGAAGCTCTTCCACAGAGAGCAAGAAAGCGCCG
GCCGGCCGCGTCTGCTAGTGCCACTCCGGCAGTCGAGAATGCTCCGCCTC
AGCCTCCCCCACCAGACCAGCAGCGGCAGCGGGAGGAGAAGGTTGCTTCA
GCGGCGCCACCAGCACCACCAAAGCTGGCGGCGGTAGCACGAGCAACACC
AGCATCGGGAGCGGCCGCGGCAGCAGCGGCCGCAACGGTAGCTGCAGGCT
TGGTTCCGGTTGCTGGCGTCGCCGAAGGCGGCCACGGCAACCAACAGCCT
CGACGGACCTCCAGTGGTGGGCGCGAGGAGAGCGGAGGAGGAGACCAGCA
CGATCCATGCCGCGGTAACGCTTCGTCCCTAGTCAGCGGCGGCGGTAACG
CTTGTTCTCTAGCAAAACCCACCGGCGGCGCCACTCCCGTCGACGGGAGT
GTTGTCCGTGATGACGGCCGTGGGAGGGAAGATGATTGGGTGGTGGAGGG
AAGGGGATCCGCAGAGGACGGTGGGGGGGAGGGGGGGGACAAGGCAGCGG
CCGTAGCAGCGCGGCACGCCGCCGTGACGGCGGAAGTGGACGCGAGGTCG
AAAATCAAGCGGTTTTCGGGAGGGCTGGAGGGCGGTGCCGGCGCGGACGG
GGGCGCGGAGGGGGCCAACTTCGAGTATTTGGACCATACGGCCGACGTCC
AGCTTCAC
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