mRNA_Ecto-sp13_S_contig12547.2109.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12547.2109.1
Unique NamemRNA_Ecto-sp13_S_contig12547.2109.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D8LJ42_ECTSI (FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ42_ECTSI)

HSP 1 Score: 198 bits (503), Expect = 1.620e-55
Identity = 90/97 (92.78%), Postives = 94/97 (96.91%), Query Frame = 1
Query:    1 PESECDMACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            PESECDMACAGASD+ CGGYDRMSVWSY TTS TGTGFTCDGIQRGDFCCSAGCGECGG+GCSNRGEGLDGDDCCQS+I+DNGNMCSVTGKAPCMID
Sbjct:  595 PESECDMACAGASDQTCGGYDRMSVWSYGTTSVTGTGFTCDGIQRGDFCCSAGCGECGGDGCSNRGEGLDGDDCCQSDIKDNGNMCSVTGKAPCMID 691          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JIY0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIY0_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 1.030e-41
Identity = 93/215 (43.26%), Postives = 93/215 (43.26%), Query Frame = 1
Query:    1 PESECDMACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCS----------------------------------------------------------------------------------------------------------------------AGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            PESECDMACAGASDEACGGYDRMSVWSY TTS T T FTCDGIQRGDFCCS                                                                                                                      AGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID
Sbjct:   11 PESECDMACAGASDEACGGYDRMSVWSYRTTSVTDTDFTCDGIQRGDFCCSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGGVFPYNERFLVGGWVCSARFGVSPNQTAPLLKTMVVLGGLWWTTSVTDTDFTCDGIQRGDFCCSVGGVFPYNERFLVGGWAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 225          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FWE8_ECTSI (Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI)

HSP 1 Score: 89.7 bits (221), Expect = 9.220e-17
Identity = 41/63 (65.08%), Postives = 50/63 (79.37%), Query Frame = 1
Query:  112 FTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*ET 300
            FTCDG+ +GD+CCSAGC ECGG GCS+RG GL G DCC S+I    N+CSVTG APC++D +T
Sbjct:  238 FTCDGVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDT 297          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FRL2_ECTSI (Endo alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 87.8 bits (216), Expect = 4.340e-16
Identity = 42/69 (60.87%), Postives = 49/69 (71.01%), Query Frame = 1
Query:   91 TSGTGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*E 297
            TS + + FTCDGI  G  CC   C  CGG GCSNRG GL GDDCC SNIE++G +CSV G+APC +D E
Sbjct:   66 TSPSDSPFTCDGILNGQACCRHECRSCGGVGCSNRGGGLTGDDCCVSNIEEHGALCSVAGQAPCFVDGE 134          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5K646_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 2.300e-14
Identity = 38/69 (55.07%), Postives = 48/69 (69.57%), Query Frame = 1
Query:   97 GTGTGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            G  T  TCD    G+ +G++CC+ GCG CGG GCS+R EGL GDDCC SNI  NG +C+ +G APC+ D
Sbjct:   18 GVATAQTCDNGLAGVSKGEYCCTLGCGTCGGSGCSSRAEGLTGDDCCTSNIASNGILCADSGAAPCIGD 86          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JW06_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 2.340e-14
Identity = 38/70 (54.29%), Postives = 48/70 (68.57%), Query Frame = 1
Query:  106 TGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*ETE 303
            T  TCD    G+  GD+CC+ GCG CGG GCS R EGLDG+DCC +NI  NG +C+ +G APC+ D E +
Sbjct:    6 TAQTCDNGLAGVSNGDYCCTLGCGTCGGPGCSTRAEGLDGNDCCTANIAQNGILCAESGAAPCIGDVEDD 75          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JU45_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 5.740e-14
Identity = 38/69 (55.07%), Postives = 47/69 (68.12%), Query Frame = 1
Query:   97 GTGTGFTCD----GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            G  T  TCD    G+  G +CC+ GCG CGG GCS+R EGL+GDDCC SNI  NG +C+ +G APC+ D
Sbjct:   18 GVTTAQTCDNGLAGVSTGVYCCTLGCGTCGGSGCSSRAEGLNGDDCCTSNIASNGILCADSGAAPCIGD 86          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: A0A6H5JEN4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEN4_9PHAE)

HSP 1 Score: 78.6 bits (192), Expect = 4.460e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  100 TGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGE-GLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            T   FTCDG++R +FCCS+GC +CGG  CS + + GL G+DCCQ+ I  +G +CSVT +APC +D
Sbjct:    7 TAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQSGLTGEDCCQNRITASGRLCSVTREAPCYMD 71          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D8LL13_ECTSI (Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL13_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 6.250e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 1
Query:  100 TGTGFTCDGIQRGDFCCSAGCGECGGEGCSNRGE-GLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            T   FTCDG++R +FCCS+GC +CGG  CS + + GL G+DCCQ+ I  +G +CSVT +APC +D
Sbjct:  774 TAGAFTCDGVERNNFCCSSGCRQCGGSNCSKQEQIGLTGEDCCQNRITASGRLCSVTQEAPCYMD 838          
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Match: D7FJ68_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ68_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 3.530e-11
Identity = 34/56 (60.71%), Postives = 41/56 (73.21%), Query Frame = 1
Query:  124 GIQRGDFCCSAGCGECGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID 291
            GIQ G+ CC A CG CGG GC+  G GL  D+CCQS IED G +CSVT +APC++D
Sbjct: 2698 GIQTGNACCLAECGTCGGRGCAEYGGGLGEDNCCQSEIEDFGELCSVTMEAPCVVD 2753          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12547.2109.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LJ42_ECTSI1.620e-5592.78FirrV-1-B30 n=2 Tax=Ectocarpus siliculosus TaxID=2... [more]
A0A6H5JIY0_9PHAE1.030e-4143.26Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWE8_ECTSI9.220e-1765.08Mannuronan C-5-epimerase n=2 Tax=Ectocarpus TaxID=... [more]
D7FRL2_ECTSI4.340e-1660.87Endo alpha-1,4 polygalactosaminidase precusor n=1 ... [more]
A0A6H5K646_9PHAE2.300e-1455.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW06_9PHAE2.340e-1454.29WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JU45_9PHAE5.740e-1455.07WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5JEN4_9PHAE4.460e-1353.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LL13_ECTSI6.250e-1353.85Endo-1,3(4)-beta-glucanase n=1 Tax=Ectocarpus sili... [more]
D7FJ68_ECTSI3.530e-1160.71WSC domain-containing protein n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12547contigEcto-sp13_S_contig12547:375..1535 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score80.5
Seed ortholog evalue4.6e-13
Seed eggNOG ortholog2880.D8LL13
Model size748
KEGG koko:K01180
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.chitin catabolic process
EggNOG OGsCOG5498@1,KOG2254@2759
EC3.2.1.6
Cds size276
COG Functional cat.M
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.023517-UTR-Ecto-sp13_S_contig12547:374..3921681462669.023517-UTR-Ecto-sp13_S_contig12547:374..392Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12547 375..392 +
1681462669.0597332-UTR-Ecto-sp13_S_contig12547:1081..15351681462669.0597332-UTR-Ecto-sp13_S_contig12547:1081..1535Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12547 1082..1535 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462669.0343292-CDS-Ecto-sp13_S_contig12547:392..5271681462669.0343292-CDS-Ecto-sp13_S_contig12547:392..527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12547 393..527 +
1681462669.0445209-CDS-Ecto-sp13_S_contig12547:940..10811681462669.0445209-CDS-Ecto-sp13_S_contig12547:940..1081Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12547 941..1081 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12547.2109.1prot_Ecto-sp13_S_contig12547.2109.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12547 393..1081 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12547.2109.1

>prot_Ecto-sp13_S_contig12547.2109.1 ID=prot_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=92bp
MACAGASDEACGGYDRMSVWSYETTSGTGTGFTCDGIQRGDFCCSAGCGE
CGGEGCSNRGEGLDGDDCCQSNIEDNGNMCSVTGKAPCMID*
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mRNA from alignment at Ecto-sp13_S_contig12547:375..1535+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12547.2109.1 ID=mRNA_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1161bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12547:375..1535+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCGAGTCCGAGTGCGACATGGCGTGCGCCGGCGCCTCGGACGAGGCGTG CGGCGGCTACGACAGGATGTCTGTCTGGTCATACGAGACGACGTCTGGCA CCGGCACCGGCTTCACGTGCGACGGGATCCAGAGGGGTGACTTCTGTTGC TCGGTAAGTGGGGTCTTTTCGTGAAAGCAGTGCTTAGTTCGCGGGTGTGT ACGCAATGATAGATTCGGCGTCAGCCCAAATCGAGCCGCTCCCCTGCAGA AGAAGATGGTGGCATTGGTTGGATTGTGGGGGTGAGGTGAAAAGAGGCAC CGATCGCCCCATCCTTCTCGGTGATTGGTTGTGGTCGTGTTCCAAATGCC CGTTTGGGATAGACCGGACACTAGTTTGTGGTGTTGTGCCCCGTTTCGCG GTGTTCGAAGCAACACGGCTGTGCACGGTCGCGTTGGACGCGAACAGGGT TTCTTGTTGTTGGATGCCTGTTCTCCTGCAAACCTTGCTGTGCTGTAATA TTATAGTTTGTGCTTGAACCTTGGACACCTGCTGAACTCATTCCGTCACT GTTCGTCACGCGACAGGCCGGGTGCGGCGAGTGCGGCGGCGAGGGCTGCA GCAATCGCGGAGAGGGTTTGGACGGAGACGACTGCTGCCAGAGCAACATC GAGGACAACGGGAACATGTGCTCCGTCACCGGCAAGGCTCCTTGCATGAT CGACTAAGAAACGGAGCGTTACCTTCGTGTGTGGCGTCATTCTGCCTGTG CTCTCCCCGCCTTGTCACACGGTGGAACGGCGTTGATTGCTTACTCGCGA CAAGAGCATCATGTGGACCTACTGGTTCGGCACACATCACCATTAGCTCT ATGTTTGAATGTTATTATTTTAGCTGGAGGGGGGGCTGCGCTGTACAACC AATGTGATGGCTGATGATACATTTGTTGCTGACTTCATTGGGAGTATTAG GCTACTTTCAATATTGATAAGCCATTTCCTCTTCAGCTTGTTGCCGAGTA CCAGTCAAAATATGGAGCCCCTGTATTGCAGTGTAGTAGCGTGTGTGATC ACCCAGGTGAATGTCATCGCTTGAGTACTTCAGAGTTTTTGCTTGATGAT GATTATTTTGGGTGATGATCTGCTGTAGTGGTGACTTCACCCAACAGCAA AGATAGATATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12547:375..1535+

>mRNA_Ecto-sp13_S_contig12547.2109.1 ID=mRNA_Ecto-sp13_S_contig12547.2109.1|Name=mRNA_Ecto-sp13_S_contig12547.2109.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=276bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12547:375..1535+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTGCGCCGGCGCCTCGGACGAGGCGTGCGGCGGCTACGACAGGAT
GTCTGTCTGGTCATACGAGACGACGTCTGGCACCGGCACCGGCTTCACGT
GCGACGGGATCCAGAGGGGTGACTTCTGTTGCTCGGCCGGGTGCGGCGAG
TGCGGCGGCGAGGGCTGCAGCAATCGCGGAGAGGGTTTGGACGGAGACGA
CTGCTGCCAGAGCAACATCGAGGACAACGGGAACATGTGCTCCGTCACCG
GCAAGGCTCCTTGCATGATCGACTAA
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