mRNA_Ecto-sp13_S_contig12505.2086.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12505.2086.1
Unique NamemRNA_Ecto-sp13_S_contig12505.2086.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12505.2086.1 vs. uniprot
Match: D7FRZ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRZ3_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 1.800e-13
Identity = 38/57 (66.67%), Postives = 38/57 (66.67%), Query Frame = 1 
Query:    1 MSARTFGSYCAGGEQLPKPT-------------WYLQVDSANQRAFSIPALIITSER 132
            MSARTFGSYCAG  QLP  T              YLQVDSANQRAFS PALIITSER
Sbjct:    1 MSARTFGSYCAGRGQLPTQTSPSSSGQAEAPAALYLQVDSANQRAFSTPALIITSER 57
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12505.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FRZ3_ECTSI1.800e-1366.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12505contigEcto-sp13_S_contig12505:1687..2165 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size135
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size135
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462667.3065712-CDS-Ecto-sp13_S_contig12505:1686..17201681462667.3065712-CDS-Ecto-sp13_S_contig12505:1686..1720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12505 1687..1720 +
1681462667.3162036-CDS-Ecto-sp13_S_contig12505:2064..21651681462667.3162036-CDS-Ecto-sp13_S_contig12505:2064..2165Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12505 2065..2165 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12505.2086.1prot_Ecto-sp13_S_contig12505.2086.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12505 1687..2165 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12505.2086.1

>prot_Ecto-sp13_S_contig12505.2086.1 ID=prot_Ecto-sp13_S_contig12505.2086.1|Name=mRNA_Ecto-sp13_S_contig12505.2086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=45bp
MSARTFGSYCAGGEQLPKPTWYLQVDSANQRAFSIPALIITSERQ
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mRNA from alignment at Ecto-sp13_S_contig12505:1687..2165+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12505.2086.1 ID=mRNA_Ecto-sp13_S_contig12505.2086.1|Name=mRNA_Ecto-sp13_S_contig12505.2086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=479bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12505:1687..2165+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCGCGCACCTTTGGTTCATACTGTGCCGGTGAGTGGAGAGAGAA
AGCAAACAGCACCACATGGAAGAGATGACATGTATGTAGCTGTGCAGTAG
CAAAGTGCTTGTAAGCTAGCAGTGTGCAAATAGCCCGCTGCTGTAGCAGT
TGTACAGTAGCCAGCCGGCTGACATGTGTGTAGGAGGGGAGGTACCCAGG
GTTGACATTAACGTGGATCGGGTGCTTGGGAAGCGAATTGCGATGTTCTG
GTGGCTCGTGCGTGTGCGCTGTGACCGTCCGTTCTGTTTTCGTTCGTCAC
ATGTCTTCTTCCTCTTTCTTATCTTGATGCATGCCTCTGTGACTGCTCCT
CTTCTTCCGTTTGACCTCCGGTGAACAGGGGGAGAGCAACTACCCAAACC
GACATGGTACCTGCAAGTGGACTCCGCGAATCAGAGAGCCTTTAGTATCC
CTGCATTGATCATTACCTCGGAGAGGCAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12505:1687..2165+

>mRNA_Ecto-sp13_S_contig12505.2086.1 ID=mRNA_Ecto-sp13_S_contig12505.2086.1|Name=mRNA_Ecto-sp13_S_contig12505.2086.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=135bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12505:1687..2165+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGGCGCGCACCTTTGGTTCATACTGTGCCGGGGGAGAGCAACTACC
CAAACCGACATGGTACCTGCAAGTGGACTCCGCGAATCAGAGAGCCTTTA
GTATCCCTGCATTGATCATTACCTCGGAGAGGCAA
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