mRNA_Ecto-sp13_S_contig12487.2065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12487.2065.1
Unique NamemRNA_Ecto-sp13_S_contig12487.2065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12487.2065.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.510e-75
Identity = 205/228 (89.91%), Postives = 208/228 (91.23%), Query Frame = 1 
Query:  232 RQTFASGGXXXXXXDEPEKVAATGTIFAYEWYDGQWKAGAFHGQGEYHFADSGDVFVGXXXXXXXXXXXXXXXXXXXGEYQGDLWCDLRHGHGVHSGPDSTYXXXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 915
            RQTFASGG      DEPEKVAATG     EWYDGQWK+GAFHGQGEYHFA+SGDV+V XXXXXXXXXXXXXXXXXXX      LWCDLRHGHGVHSGPDSTY  XXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY
Sbjct:  134 RQTFASGGGGGGRGDEPEKVAATGG--ENEWYDGQWKSGAFHGQGEYHFANSGDVYVXXXXXXXXXXXXXXXXXXXXXXXXXXLWCDLRHGHGVHSGPDSTYDGXXXXXXXXXXXKLSDKDGNVFEGFFREXXXXXXXXXXXXXXXXXXXXXXXXXXERGRRSGEGTMFAAKTXXXXXXXXXXXXXXXXXRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEWNDPSY 359
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12487.2065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G0U8_ECTSI1.510e-7589.91Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12487contigEcto-sp13_S_contig12487:469..3622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score246.1
Seed ortholog evalue2.1e-62
Seed eggNOG ortholog2880.D7G0U8
Model size918
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.Translation initiation factor IF-2, N-terminal region
EggNOG OGsCOG5253@1,KOG0229@2759
Ec32 ortholog descriptionMORN motif
Ec32 orthologEc-23_002230.1
Cds size918
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12487.2065.1prot_Ecto-sp13_S_contig12487.2065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12487 469..3622 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462665.634305-CDS-Ecto-sp13_S_contig12487:468..5381681462665.634305-CDS-Ecto-sp13_S_contig12487:468..538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 469..538 +
1681462665.64739-CDS-Ecto-sp13_S_contig12487:1349..14381681462665.64739-CDS-Ecto-sp13_S_contig12487:1349..1438Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 1350..1438 +
1681462665.655838-CDS-Ecto-sp13_S_contig12487:1582..17871681462665.655838-CDS-Ecto-sp13_S_contig12487:1582..1787Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 1583..1787 +
1681462665.6642535-CDS-Ecto-sp13_S_contig12487:2094..22051681462665.6642535-CDS-Ecto-sp13_S_contig12487:2094..2205Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 2095..2205 +
1681462665.6731875-CDS-Ecto-sp13_S_contig12487:2366..25161681462665.6731875-CDS-Ecto-sp13_S_contig12487:2366..2516Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 2367..2516 +
1681462665.6852238-CDS-Ecto-sp13_S_contig12487:3123..32501681462665.6852238-CDS-Ecto-sp13_S_contig12487:3123..3250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 3124..3250 +
1681462665.694383-CDS-Ecto-sp13_S_contig12487:3456..36221681462665.694383-CDS-Ecto-sp13_S_contig12487:3456..3622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12487 3457..3622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12487.2065.1

>prot_Ecto-sp13_S_contig12487.2065.1 ID=prot_Ecto-sp13_S_contig12487.2065.1|Name=mRNA_Ecto-sp13_S_contig12487.2065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=306bp
GKLTFTNGSTYSGSWDKDARRGQDGKACGTGTQTFGNGDRYDGDWKDGMM
SGKGTYVSANGDKYEGEWTDDEKNGKGRQTFASGGGGGGGGDEPEKVAAT
GTIFAYEWYDGQWKAGAFHGQGEYHFADSGDVFVGSWVGNQMHGKGKIVY
GGDGGEYQGDLWCDLRHGHGVHSGPDSTYEGAWSNDRRHGDGKLSDKDGN
VFEGFFREGVWDNGQLTGQATVQYKNGDRYTGGFERGRRSGEGTMFAAKT
GYEFTGTFEKGVKNGSGRLRLPCGASVEGLWILGNLVGNSKFSFAPDSEW
NDPSY*
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mRNA from alignment at Ecto-sp13_S_contig12487:469..3622+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12487.2065.1 ID=mRNA_Ecto-sp13_S_contig12487.2065.1|Name=mRNA_Ecto-sp13_S_contig12487.2065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3154bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12487:469..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAAACTCACTTTCACGAACGGTTCGACCTACAGCGGCTCCTGGGATAA
AGATGCAAGACGAGGCCAAGGTGTGCAATGGAGATTTCGGGATATGGGGA
TGTGCGCTTCGTTCCGCAATGTCGACGGCCCAATTAGCATTCAAGGCGAA
ATGGAATGTGCTCGGAGTGGAAGTGATATCGAAGCCTCCAGACCAGAGGA
TGGGTCGTCGGGATGATGCTTACCAAATGATATAAGTATTTCGCTTCTGA
TTTCTGCAGCATTTGGTTCACGTGGGGTTCTCTTTTCGCAATATAACATA
TAACTAGGTTTTGACTACCCTCAAATCTCGAGTTGCGATCGAGAGGAAGA
CGGTCCACATCTAGATTATCGATGGATGAAGGATGATGTCATGCTTTGTA
TACGTTTGGACTCGACGTTGCTATAGGTCTCCATGACGTTCGCACCCACA
CGGCCACAAGAGGCTTCGAGATCACGGACCGACGCATCCGTACATTCCCA
CCACAAAACTGGCCTGTTGTGGCCACGCACGAGTTGTTCGAATTCGAATC
GAGATACCCACGAATCATTCCGACCCTCTCAAAGTTGACTATTGCCACCG
GTGATTACCCGCACTGATGTTCCAAACCACAACCATATGTGGTCACTCAT
AGTATATACTTCTCAGGAGCCGATATTCACAGGGGACGCGTTCTCAGCAC
ATGGCTCAAACGCGTGCTTTTTTCGCTGACGACCAAGTCCACAGTTGGAA
TCCCTGCATGCTGCCTTTTGTGAAGTATTCCGAGGGAGTGAAAAGGGCAA
GAATCGCGTCAACGTGTTTGTGCTTGCCTCCAGGGACATGCCACTACACA
AACGGAAATACCTACACGGGTTCATGGAAAGATGGAAAAGCGTGTGGTAC
CGGGACGCAGACCTTCGGTAACGGTGATCGATACGACGGAGATTGGAAAG
ATGGCATGATGAGCGGCAAGGTAGGTTCCGCCCGCATGCTACTTAACGTA
TGCAGCAGTGAGTTTTTAAAGAAATCATGCCGCCGTGGCGTCAGACGATC
CCGCTGAAGATACTTCGCCGCTCGCCGCGTCGAATTCGGCGGATCGCTGG
GTGGTGTTCACCAGGGTACCTACGTGAGTGCAAATGGAGATAAATACGAA
GGGGAGTGGACGGACGATGAGAAGAACGGCAAGGGGCGTCAGACGTTTGC
CAGCGGCGGCGGGGGCGGCGGCGGAGGGGATGAGCCCGAGAAGGTGGCAG
CTACCGGTACCATCTTCGCATACGAGTGGTACGACGGGCAGTGGAAAGCT
GGAGCATTTCACGGTCAAGGTGAGCCTTCCTCCTTCTAACGCCGACAGAG
GAAGCAAGAATGGAAATGTCTGTCTTACACTGTGTGAAACACGTCTGACC
CTTGTCCACACGTGGACGGCTTACCCGCCCACTGCAGACAGCAAGTAGAT
AAATGCGCCCTGACTACAAAACGTTTTCCTTTGTGTCCATCCACCCGCGT
AAAAAACGGGTTTGCCTCTTGGGAACACAATGCAGCACGGGCGCGATCTT
CGCACACTATCGTGGCGGTCACTCCGAAGTTGACGCTGACATATTTGCAT
GCCGCAAGCGCACGTTTGATACACAGGAGAATATCACTTCGCCGATAGCG
GCGACGTGTTTGTCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAAGGG
AAGATCGTGTATGGCGGTGATGGTGGAGAGTACCAAGGTGAGCTTGCGTC
AAACTATTGTAGAACATTGAATAGAGCAGGGCATCTCACAACACAAACTG
GACCGAAGATCGAGTGAATGGTCGAGTGAACCGTCTGAATGTGGGGGCAT
CCTATCATTCGCATGGGGTGTTGCTGACGAACCGCCCATACTCGACAGGC
GACCTATGGTGTGATCTTCGACACGGTCACGGCGTACACAGCGGCCCCGA
CTCCACCTATGAGGGTGCCTGGAGCAATGACCGTAGGCACGGCGATGGAA
AGCTCAGTGACAAGGACGGGAACGTATTCGAGGGCTTTTTCAGAGAAGGT
TTGCACCGGAATCACCATGGGGACCGGAAATTCCGCGCGCAGGGCGACGA
GGCAGTGATACAAGAGGTAGTTGAGGATATGTGGGTATGAGCGCAGCTGC
CGGTGGCGACACGACGATGGCGATCGTCGCGTGTCGCACATTTACTACGG
TACTACCCTAACGCTTTACCGCCGGCAGCACTGTTCGGTGATTTTTCCAC
GTCCCTCTCGACGCAGGAGAAAAGCATGGCAACGGTCAACTTAAGTCCGC
GGCAGGCGACGAGATTGAAGGTGGTGACATGGCCGTTCTCGTCTGTACTC
GGAGGACCGTCGTGTCGCGTGCGCACGTAGCGTTCATGAGATTTTGTCGT
TGCTGTCCCGCAACAGAGTGAAGCTTTACGTTGTTAGCGATGATGAGTGT
CTTGGCCTTTTTCACACAGTCGCACGTGGTACCTGTGGTTGACGGTACTC
GTCCTCTCGGCGTGGACTTGGTTTCACAGGGACTGTATCGTACGCTTCAA
CTGGCCAGGCAGTGAAAGTTGCTTTGATCCTTGTACTATCTTCCTGATAT
CTTCCTAGTATTTCGGTAACGCGCAATGCTTCCGTGAATTATGTCGGGTG
GAAAGGTGTGTGGGACAACGGGCAGCTCACCGGCCAAGCGACGGTTCAGT
ACAAGAACGGTGATCGGTACACTGGCGGCTTCGAGAGGGGCCGGAGGAGC
GGCGAGGGAACTATGTTCGCCGCCAAAACAGGGTGAGGCAATAATGGAAA
ATCATGATTGCTAAAATGCTGCCCGAACGGACTATTCAGTACGACCTCTG
GAATGAATGTTCGCAATGTCGTGGTTCGCTGTCGTCGTCTGGGGGAAATC
GATGATTGTCAGCTCCAGATCGAAACATCCTCGAGCCCGACCGAAAGTTC
CCGCTGCTGTTTCTCGCTTGAAATCATGCTCATGAAAGCTACGAGTTCAC
CGGCACCTTCGAGAAGGGCGTAAAAAACGGTTCAGGACGTTTGCGCCTTC
CGTGCGGCGCGAGCGTGGAAGGGCTATGGATACTGGGCAATCTCGTCGGC
AACTCGAAATTTTCATTTGCACCTGACTCCGAGTGGAACGACCCGAGTTA
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12487:469..3622+

>mRNA_Ecto-sp13_S_contig12487.2065.1 ID=mRNA_Ecto-sp13_S_contig12487.2065.1|Name=mRNA_Ecto-sp13_S_contig12487.2065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=918bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12487:469..3622+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGTAAACTCACTTTCACGAACGGTTCGACCTACAGCGGCTCCTGGGATAA
AGATGCAAGACGAGGCCAAGATGGAAAAGCGTGTGGTACCGGGACGCAGA
CCTTCGGTAACGGTGATCGATACGACGGAGATTGGAAAGATGGCATGATG
AGCGGCAAGGGTACCTACGTGAGTGCAAATGGAGATAAATACGAAGGGGA
GTGGACGGACGATGAGAAGAACGGCAAGGGGCGTCAGACGTTTGCCAGCG
GCGGCGGGGGCGGCGGCGGAGGGGATGAGCCCGAGAAGGTGGCAGCTACC
GGTACCATCTTCGCATACGAGTGGTACGACGGGCAGTGGAAAGCTGGAGC
ATTTCACGGTCAAGGAGAATATCACTTCGCCGATAGCGGCGACGTGTTTG
TCGGCTCCTGGGTGGGGAACCAAATGCACGGGAAAGGGAAGATCGTGTAT
GGCGGTGATGGTGGAGAGTACCAAGGCGACCTATGGTGTGATCTTCGACA
CGGTCACGGCGTACACAGCGGCCCCGACTCCACCTATGAGGGTGCCTGGA
GCAATGACCGTAGGCACGGCGATGGAAAGCTCAGTGACAAGGACGGGAAC
GTATTCGAGGGCTTTTTCAGAGAAGGTGTGTGGGACAACGGGCAGCTCAC
CGGCCAAGCGACGGTTCAGTACAAGAACGGTGATCGGTACACTGGCGGCT
TCGAGAGGGGCCGGAGGAGCGGCGAGGGAACTATGTTCGCCGCCAAAACA
GGCTACGAGTTCACCGGCACCTTCGAGAAGGGCGTAAAAAACGGTTCAGG
ACGTTTGCGCCTTCCGTGCGGCGCGAGCGTGGAAGGGCTATGGATACTGG
GCAATCTCGTCGGCAACTCGAAATTTTCATTTGCACCTGACTCCGAGTGG
AACGACCCGAGTTACTGA
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