mRNA_Ecto-sp13_S_contig12473.2050.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: D7G0B7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0B7_ECTSI) HSP 1 Score: 394 bits (1013), Expect = 3.530e-130 Identity = 217/266 (81.58%), Postives = 228/266 (85.71%), Query Frame = 1
Query: 1 EAVIPTSGPALSVAXXXXXXAGSRGLPGTQGPTSTPTSASPPPALAISGGTPSPTLEPIDFPDVVHAPSSSPEIAASSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWTLTGEAEYESILVGAYLDEDTEEEGDSSPWYLIFISEDDDATVIYCNSNEQGILVHPADATWQCDLDGTGEYSDVTDEEVSFTCGCTGTPAXXXASSAIAAPESPTGTSPPIEPESGDGSMLGRRLSTSALVAGATSVLAIALALAVG 798
EAV PTS P SVA A S+GLP TQGPTSTPTSA ISGGTPSPTLEPIDFPDVVHAPSS PEIA SSPTCGDTESFQIISSELP +QGCFQATSTLFSTPESTEEYW+LTGEAE+ESILVG+ LDEDTEEEGDS+PWYLIF+SEDDDATV+YC SNEQGILVHPADATW+CDLDGTG YSDVT EEVSFTCGCTGTPA A IA PESP GTSPPIEPES DG +LGRRLSTSALVAGATSVLAI LAL +G
Sbjct: 477 EAVTPTSEPVPSVAPTPDPAAESQGLPPTQGPTSTPTSA-------ISGGTPSPTLEPIDFPDVVHAPSSPPEIAPSSPTCGDTESFQIISSELPDIQGCFQATSTLFSTPESTEEYWSLTGEAEFESILVGSILDEDTEEEGDSTPWYLIFLSEDDDATVLYCYSNEQGILVHPADATWRCDLDGTGVYSDVTAEEVSFTCGCTGTPAP--APGPIATPESPAGTSPPIEPESDDGGILGRRLSTSALVAGATSVLAIGLALGMG 733
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: A0A6H5JQX7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQX7_9PHAE) HSP 1 Score: 271 bits (693), Expect = 5.020e-89 Identity = 144/176 (81.82%), Postives = 152/176 (86.36%), Query Frame = 1
Query: 16 TSGPALSVAXXXXXXAGSRGLPGTQGPTSTPTSASPPPALAISGGTPSPTLEPIDFPDVVHAPSSSPEIAASSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWTLTGEAEYESILVGAYLDEDTEEEGDSSPWYLIFISEDDDATVIYCNSNEQGILVHPADATWQ 543
T G SVA AGSRGL GTQGPTS PTS SPPPALAI GGTPSPTL+PIDFPDVVHAPSS PEIA SSPTCGDTESFQIISSELP VQGCFQATSTLFSTPESTEEYW+LTGEAE+ESILV + LD DTEEE DS+PWYL+F+S DDDATV+YC SNEQGILVHP DATWQ
Sbjct: 14 TPGTTFSVAPTPGPAAGSRGLLGTQGPTSIPTSVSPPPALAIWGGTPSPTLKPIDFPDVVHAPSS-PEIAPSSPTCGDTESFQIISSELPDVQGCFQATSTLFSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWYLVFLSADDDATVVYCYSNEQGILVHPTDATWQ 188
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: A0A6H5JLC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLC2_9PHAE) HSP 1 Score: 283 bits (723), Expect = 7.650e-88 Identity = 155/179 (86.59%), Postives = 163/179 (91.06%), Query Frame = 1
Query: 7 VIPTSGPALSVAXXXXXXAGSRGLPGTQGPTSTPTSASPPPALAISGGTPSPTLEPIDFPDVVHAPSSSPEIAASSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWTLTGEAEYESILVGAYLDEDTEEEGDSSPWYLIFISEDDDATVIYCNSNEQGILVHPADATWQ 543
V PTSGPA SVAXXXXXXAGSRGLPGTQGPTSTPTS SPPPA AISGGTPSP L IDFPDVV APSSSPEIA SSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYW+LTGEAE+ESILV + LD DTEEE DS+PW+L+F+S DDDATV+YC SNEQGILVHP DATWQ
Sbjct: 464 VTPTSGPAPSVAXXXXXXAGSRGLPGTQGPTSTPTSVSPPPAPAISGGTPSPMLGSIDFPDVVPAPSSSPEIAPSSPTCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWSLTGEAEFESILVASILDLDTEEEDDSTPWFLVFLSADDDATVVYCYSNEQGILVHPTDATWQ 642
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: A0A6H5L7T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7T2_9PHAE) HSP 1 Score: 138 bits (348), Expect = 1.630e-33 Identity = 71/142 (50.00%), Postives = 93/142 (65.49%), Query Frame = 1
Query: 238 TCGDTESFQIISSELPGVQGCFQATSTLFSTPESTEEYWTLTGEAEYESILVGAYLDEDTEEEGDS-SPWYLIFISEDDDATVIYCNSNEQGILVHPADATWQCDLDGTGEYSDVTDEEVSFTCGCTGTPAXXXASSAIAAP 660
+CGD ESF+I S LP V+GC+Q T F + EEY T++G + +E I + +++GD P+YL F+SE+DD T++YC SNE + VHP DATW CDL GTG + DVTDEE+S CGCTGTPA A S +A P
Sbjct: 442 SCGDGESFRITSDVLPVVEGCYQQTDWSFDEGDEYEEY-TVSGMSGWEHIAILGMSSAFADDDGDVIMPFYLAFVSEEDDGTIVYCVSNEDAVTVHPVDATWTCDLGGTGTFEDVTDEEISMDCGCTGTPAPVVADSPVAPP 582
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: A0A6H5JQR0_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQR0_9PHAE) HSP 1 Score: 114 bits (286), Expect = 7.260e-29 Identity = 66/84 (78.57%), Postives = 69/84 (82.14%), Query Frame = 1
Query: 547 DLDGTGEYSDVTDEEVSFTCGCTGTPAXXXASSAIAAPESPTGTSPPIEPESGDGSMLGRRLSTSALVAGATSVLAIALALAVG 798
DLDGTGEYSDVT EEVSFTCGCTGTPA A+ PTGTSPPIEPES DG +LGRRLSTSALVAGATSVLAIALAL +G
Sbjct: 20 DLDGTGEYSDVTAEEVSFTCGCTGTPAPAPDPIAV-----PTGTSPPIEPESDDGGLLGRRLSTSALVAGATSVLAIALALGMG 98
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Match: A0A6H5J9N6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9N6_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 4.890e-7 Identity = 48/166 (28.92%), Postives = 72/166 (43.37%), Query Frame = 1
Query: 241 CGDTESFQIISSELPGVQGCFQAT-------STLFSTPESTEEYWTLTGEAEYESILVGAYLDEDTEEEGDSSPWYL--IFISEDDDATVIYCNSNEQGILVHPADATWQCDLDGTGEYSDVTDEEVSFTCGCTGTPAXXXASSAIAAPESPTGTSPPIEPESGDG 711
C D +SF + S +P +GC+ + ++ST +ST + Y T++ + W + + + D T+ + +HPA A+WQCD+DG+GE V D+E CGC GT A +SS A P SP P S DG
Sbjct: 120 CSDGDSFTVTSPSIPSTEGCYTSVPGTSFGEGFMYSTEDST--------------VTTTIYPKIITKDGTSNFFWAVSELAVFSGDSVTIDCLSVETTSTYIHPAAASWQCDVDGSGELLPVEDDEFFLVCGC-GTSATSGSSSDGADPVQTPTASPVSNPSSVDG 270 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12473.2050.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12473.2050.1 >prot_Ecto-sp13_S_contig12473.2050.1 ID=prot_Ecto-sp13_S_contig12473.2050.1|Name=mRNA_Ecto-sp13_S_contig12473.2050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=268bp EAVIPTSGPALSVAPTPGPAAGSRGLPGTQGPTSTPTSASPPPALAISGGback to top mRNA from alignment at Ecto-sp13_S_contig12473:1..4199+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12473.2050.1 ID=mRNA_Ecto-sp13_S_contig12473.2050.1|Name=mRNA_Ecto-sp13_S_contig12473.2050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4199bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12473:1..4199+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12473:1..4199+ >mRNA_Ecto-sp13_S_contig12473.2050.1 ID=mRNA_Ecto-sp13_S_contig12473.2050.1|Name=mRNA_Ecto-sp13_S_contig12473.2050.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=804bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12473:1..4199+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |