mRNA_Ecto-sp13_S_contig12447.2028.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12447.2028.1
Unique NamemRNA_Ecto-sp13_S_contig12447.2028.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A6H5KL39_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KL39_9PHAE)

HSP 1 Score: 462 bits (1189), Expect = 6.840e-151
Identity = 255/309 (82.52%), Postives = 258/309 (83.50%), Query Frame = 1
Query:    1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            VSMGWE EESTAALEASGGDVVAAAEALAAQEEEDLERYEE                                 EEEDRR      A VLSMQFEKSIEE          ARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKAST+KKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILD+YAEWCGPCKQLTPALEEAA+RSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG
Sbjct:  371 VSMGWETEESTAALEASGGDVVAAAEALAAQEEEDLERYEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEEDRR------AGVLSMQFEKSIEEXXXXXXXXXXARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTSKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDVYAEWCGPCKQLTPALEEAAIRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 673          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: D8LN57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN57_ECTSI)

HSP 1 Score: 421 bits (1081), Expect = 2.440e-135
Identity = 236/309 (76.38%), Postives = 238/309 (77.02%), Query Frame = 1
Query:    1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            VSMGWE EESTAALEASGGDVVAAAEALAAQEEEDLERYEE                                                                      RKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKK+EPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILD+YAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG
Sbjct:  362 VSMGWEAEESTAALEASGGDVVAAAEALAAQEEEDLERYEEXXXXXXXXXXXXXXXXXXXXXXXXXXX---------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKSEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDVYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 661          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A836CN35_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CN35_9STRA)

HSP 1 Score: 206 bits (523), Expect = 2.220e-56
Identity = 130/317 (41.01%), Postives = 175/317 (55.21%), Query Frame = 1
Query:    1 VSMGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVA--RKALLMQWQKDIEGKGGSRKDQKQFE------KTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            V MGW+ E +  AL A   DVV AAEALAA+EEED ER+ E L           VAM+A                                                      R+ALL QW +DIE +GGS +  KQ++      ++         K   A+  K   P  P PA ++DVVFE T +TLQ++V+ESPVPV+LD+YA+WCGPCKQLTP LE+ A+RSGGMFR+ K+D++++RSIAE+L + A PSVF +++G I++NFVGGL  DEMQ+FMM  + G  P  D  L+E Q +Q + +  S  L  +AG
Sbjct:  115 VKMGWDPERAALALSAHNNDVVQAAEALAAEEEEDRERFSEAL-----------VAMAAKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRQALLAQWLRDIEKQGGSERALKQYQMAGGKLRSAAPAAAAPQKAKPAAKPKDKGPAGPKPAAKKDVVFEATSETLQQLVVESPVPVLLDVYADWCGPCKQLTPMLEDMAVRSGGMFRLVKLDSQQERSIAELLKVEALPSVFALRNGAIINNFVGGLDADEMQTFMMDFLTGKTPAADAPLKERQLTQRQRKDCSFALQQMAG 420          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: W7TFJ6_9STRA (Thioredoxin n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TFJ6_9STRA)

HSP 1 Score: 179 bits (453), Expect = 8.550e-47
Identity = 110/274 (40.15%), Postives = 154/274 (56.20%), Query Frame = 1
Query:  115 YEEGLADLQQRGWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQK--DIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMP-PPKDQALREHQKSQAELRGISRKLAHVAG 927
            Y +G+  L  +G   + A+  +  A G+   AL  L+++            ++   E ++EEMV  GWDE+VAR+ALL Q +K  D+                  G  Q                    PA   DVVFEVT+  LQK+V+ESPVPV+LD+YAEWCGPCKQL P LE  A+++GG+FR+AKVD++K R I+E+LG+ A PSVF  +DG ++DNFVG   Q  +Q+FM  ++M  P PP D     H K+  +L  +  KLAH+AG
Sbjct:  346 YVDGVNALIGKGLSREDALELLTLAKGDLPTALEILDQD-----------AMARDLEAAVEEMVGEGWDEDVARQALLAQREKTKDLPPPAPVAGTASPSRGPPSGPLQXXXXXXXXXXXXXXXXXPVPPAAHADVVFEVTESDLQKIVIESPVPVLLDVYAEWCGPCKQLGPMLEAMAVKAGGLFRLAKVDSDKNRGISEMLGVQALPSVFAFRDGALVDNFVGMPQQATLQAFMTRLLMRSPRPPVDPLKDPHAKTAEDLEKMGSKLAHLAG 608          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S2FXE5_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2FXE5_9STRA)

HSP 1 Score: 168 bits (426), Expect = 3.330e-43
Identity = 113/315 (35.87%), Postives = 169/315 (53.65%), Query Frame = 1
Query:   10 GWEVEESTAALEASGGDVVAAAEALAAQEEE-DLERYEEGLADLQQR-GWDSDVAMS-----AMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGKASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPK--DQALREHQKSQAELRGISRKLAHVAG 927
            GW+  E+   L+ + GDV AAAE LA+ EE   L+R +  LA L+   G+D D A       A+++A GNST A    +EE               Q +K++  MV +GWD E A++ L  +    I+ + G + +                          N    P P  R+DV + VT  + Q +V+ SPVPV++DI+A WCGPCK L P LE+  MR+GG FRVA+VDA+ +R + E L + A P+VF +    I+D+FVG   Q+++Q F+M +VM +P P+  + A  E   +  +L+ +SR LA+V G
Sbjct:   84 GWDETEAVEGLQQTDGDVAAAAEVLASGEEALILKRTDAALATLRALPGFDDDFASEDFAKLAIKQALGNSTVARELFKEE---------MGAFRSQMDKAVARMVGNGWDAEEAKETLKRE---QIQRRNGEKVE--------------------------NSVDMPPPVDRDDVFYNVTMNSFQSMVMNSPVPVVIDIHASWCGPCKALNPILEDVVMRAGGQFRVARVDADVERELVEALEVKALPTVFVVSGCQIIDSFVGVPTQEDLQQFLMRLVMDVPRPETTEIAANETGHTDVQLKALSRSLANVVG 360          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7R9U210_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U210_9STRA)

HSP 1 Score: 154 bits (388), Expect = 4.380e-39
Identity = 103/288 (35.76%), Postives = 151/288 (52.43%), Query Frame = 1
Query:  148 GWDSDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMVEHGWDEEVARKALLMQWQKDIEGKGGSRKDQK--------QFEKTVQG---VHQKGVKEGKA--------------STTKKNEPPAPTPAKREDVVFEVTDKT-LQKVVLE--SPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            GWD+  A +A+ +  GN+T AL  LE E+         A +  +FEK +E M  +GWD +VAR+AL  Q+  D +   G    Q+        Q   T++    + ++  K  KA              + T   +PP     KREDVVFE+T    LQ ++ +   P  V++D+YA+WCGPCKQLTP LEEAAM+ GG  RV K++++K   ++   G+ A PSVF   DG ++DN VG   Q  +Q F++   M  P  +     E + S AE   ++R LA +AG
Sbjct:   58 GWDAGAAAAAVEQCDGNATAALIVLEAEE---------ATIQSEFEKGVESMCTNGWDADVARQALYHQYVLDQKRARGEPLPQQGEMPNSVAQMRPTLRAQPVLPKEKPKAPKAXXXXXXXXXXXXXLAETPAEKPPQTPTVKREDVVFELTSVAQLQPLIFDYTGPGSVLVDVYADWCGPCKQLTPVLEEAAMKLGGYMRVVKINSDKFPQLSRAFGVSALPSVFRFTDGELVDNMVGVPGQAALQKFLIDSAMSKPNAEPNPTEERKLSAAERLQMTRSLALIAG 336          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S3VBH3_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3VBH3_9STRA)

HSP 1 Score: 144 bits (363), Expect = 1.420e-35
Identity = 73/149 (48.99%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  487 APTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDE--MQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            AP PAK+EDV+F+ T +TLQK+VLESPVPV+LD+YA+WCGPCK LTPALE+ A++ GGMFR+ K++ +++R+I+  L + + P+VFG++DG I+ +F G + +DE  MQ+FMMG+ +G          E +++  EL   S+KL  + G
Sbjct:   64 APGPAKKEDVIFQATSETLQKLVLESPVPVLLDVYADWCGPCKALTPALEQMAIKGGGMFRLVKLNTDEERNISAALEVQSLPTVFGIRDGKIVHHFKG-MPRDEKMMQNFMMGL-LGAAKFNPLVTAEEKENYEEL---SKKLIKIGG 207          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S3Q836_9STRA (Hypothetical protein n=2 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q836_9STRA)

HSP 1 Score: 144 bits (363), Expect = 6.950e-35
Identity = 73/149 (48.99%), Postives = 109/149 (73.15%), Query Frame = 1
Query:  487 APTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVGGLAQDE--MQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVAG 927
            AP PAK+EDV+F+ T +TLQK+VLESPVPV+LD+YA+WCGPCK LTPALE+ A++ GGMFR+ K++ +++R+I+  L + + P+VFG++DG I+ +F G + +DE  MQ+FMMG+ +G          E +++  EL   S+KL  + G
Sbjct:  358 APGPAKKEDVIFQATSETLQKLVLESPVPVLLDVYADWCGPCKALTPALEQMAIKGGGMFRLVKLNTDEERNISAALEVQSLPTVFGIRDGKIVHHFKG-MPRDEKMMQNFMMGL-LGAAKFNPLVTAEEKENYEEL---SKKLIKIGG 501          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A7S2YE07_9STRA (Hypothetical protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YE07_9STRA)

HSP 1 Score: 143 bits (361), Expect = 1.220e-34
Identity = 73/149 (48.99%), Postives = 102/149 (68.46%), Query Frame = 1
Query:  481 PPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVG-GLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISRKLAHVA 924
            PPAP  AK+ DVVFE T   +Q++VLESPVPV+LDIYA+WCGPCK L PALEE A++SGGMFR+ KV+++ +R ++  L + A P+VFG+KDG I+  F G   + ++MQ+FMMG+++G    K     E +    EL     K+A  +
Sbjct:  307 PPAPKEAKKSDVVFEATTAQIQELVLESPVPVLLDIYADWCGPCKVLGPALEEMAVKSGGMFRLVKVNSDNERPVSTALEVTALPTVFGVKDGRIVHMFQGMPKSPEDMQNFMMGLMVGESSFKPPLTTEQKDKYVELTNKLVKMASTS 455          
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Match: A0A448ZQ02_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQ02_9STRA)

HSP 1 Score: 140 bits (353), Expect = 1.340e-33
Identity = 69/133 (51.88%), Postives = 96/133 (72.18%), Query Frame = 1
Query:  457 ASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCGPCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKDGIILDNFVG-GLAQDEMQSFMMGVVMGMP--PP 846
            A  +  N    P PAK+EDVVFE T   LQK+VLESPVPV+LD+YA+WCGPCK L PALE+ A++SGGMFR+ K++++ +R +++ L + A P+VFG+KDG I+  F G   ++D M++FMMG+    P  PP
Sbjct:  277 APASSSNSDNMPKPAKKEDVVFEATTDQLQKLVLESPVPVLLDVYADWCGPCKVLGPALEDMAIKSGGMFRLVKINSDNERPVSQALEVAALPTVFGIKDGKIVHKFEGMPKSEDMMRNFMMGLFGAAPFSPP 409          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12447.2028.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KL39_9PHAE6.840e-15182.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN57_ECTSI2.440e-13576.38Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CN35_9STRA2.220e-5641.01Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
W7TFJ6_9STRA8.550e-4740.15Thioredoxin n=2 Tax=Monodopsidaceae TaxID=425072 R... [more]
A0A7S2FXE5_9STRA3.330e-4335.87Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7R9U210_9STRA4.380e-3935.76Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S3VBH3_9STRA1.420e-3548.99Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
A0A7S3Q836_9STRA6.950e-3548.99Hypothetical protein n=2 Tax=Chaetoceros debilis T... [more]
A0A7S2YE07_9STRA1.220e-3448.99Hypothetical protein n=1 Tax=Amphiprora paludosa T... [more]
A0A448ZQ02_9STRA1.340e-3351.88Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12447contigEcto-sp13_S_contig12447:744..4575 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score419.9
Seed ortholog evalue1.1e-114
Seed eggNOG ortholog2880.D8LN57
Model size930
KEGG koko:K03671
KEGG Pathwayko04621,ko05418,map04621,map05418
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.glycerol ether metabolic process
EggNOG OGsCOG0526@1,KOG0910@2759
Cds size924
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03110
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12447.2028.1prot_Ecto-sp13_S_contig12447.2028.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12447 744..4569 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.646081-CDS-Ecto-sp13_S_contig12447:743..8721681462662.646081-CDS-Ecto-sp13_S_contig12447:743..872Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 744..872 -
1681462662.6561682-CDS-Ecto-sp13_S_contig12447:1671..18331681462662.6561682-CDS-Ecto-sp13_S_contig12447:1671..1833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 1672..1833 -
1681462662.6639373-CDS-Ecto-sp13_S_contig12447:2338..24281681462662.6639373-CDS-Ecto-sp13_S_contig12447:2338..2428Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 2339..2428 -
1681462662.6717582-CDS-Ecto-sp13_S_contig12447:2767..28931681462662.6717582-CDS-Ecto-sp13_S_contig12447:2767..2893Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 2768..2893 -
1681462662.6832845-CDS-Ecto-sp13_S_contig12447:3428..35881681462662.6832845-CDS-Ecto-sp13_S_contig12447:3428..3588Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 3429..3588 -
1681462662.6968079-CDS-Ecto-sp13_S_contig12447:3930..40801681462662.6968079-CDS-Ecto-sp13_S_contig12447:3930..4080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 3931..4080 -
1681462662.704992-CDS-Ecto-sp13_S_contig12447:4462..45691681462662.704992-CDS-Ecto-sp13_S_contig12447:4462..4569Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12447 4463..4569 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.7163577-UTR-Ecto-sp13_S_contig12447:4569..45751681462662.7163577-UTR-Ecto-sp13_S_contig12447:4569..4575Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12447 4570..4575 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12447.2028.1

>prot_Ecto-sp13_S_contig12447.2028.1 ID=prot_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=308bp
MGWEVEESTAALEASGGDVVAAAEALAAQEEEDLERYEEGLADLQQRGWD
SDVAMSAMREAGGNSTEALHALEEEDRRVSPQGGAAVLSMQFEKSIEEMV
EHGWDEEVARKALLMQWQKDIEGKGGSRKDQKQFEKTVQGVHQKGVKEGK
ASTTKKNEPPAPTPAKREDVVFEVTDKTLQKVVLESPVPVILDIYAEWCG
PCKQLTPALEEAAMRSGGMFRVAKVDAEKQRSIAEVLGIHAFPSVFGMKD
GIILDNFVGGLAQDEMQSFMMGVVMGMPPPKDQALREHQKSQAELRGISR
KLAHVAG*
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mRNA from alignment at Ecto-sp13_S_contig12447:744..4575-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12447.2028.1 ID=mRNA_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3832bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12447:744..4575- (Ectocarpus species13 EcNAP12_S_4_19m)
GTTTCAATGGGCTGGGAGGTGGAGGAGTCAACCGCCGCGCTTGAGGCGTC CGGGGGAGACGTCGTGGCAGCCGCTGAGGCTCTCGCCGCCCAGGAGGAAG AGGACCTGGAAAGGTGCGTATCGGCGGGGAGAATTATTTGCGTCGTTGGC ACACAGAAGCATCTCTTCCTTGCACCTTCGAGTGAAATGTGAGACTGCTG TGGTTGCCGCCGCACGAAGCAACGCAGCGAAAAAATCGCCATGCGCATCG TACTGACCGTTCGGAGGTGTAACGTAGGTTACTGGCTGCAACCTCTTCTC ATGTTTCCATTTTTCACACGCGTGTGGTGTCGCCGTGCGCCAAAATGAAT GCAGCAATCGTATATTTTCACTTTTGTTCACACGTTGTTCACTTTTCATA CGAGTGTGTGGTGGTAGCGTATGAATGCAGTCACTGATTTTTGGATTCTT CTGGATTTTGATGCACGCTGTCCAACGCTTCGATTGGTGCGATAGGTACG AGGAAGGGCTCGCCGACCTGCAGCAGCGGGGGTGGGACTCTGACGTGGCC ATGTCCGCCATGAGAGAGGCCGGCGGCAATAGCACGGAGGCGTTGCACGC CCTCGAGGAGGAGGACAGGCGAGTCTCCCCGCAGGGAGGAGCTGCGTCTT TTGCCGAGGTCGTATAGTCGCATCTAGCGTGTTCCTTGACGTTGTTCTCC TGGATGGAATGTTTTCGCTTGTTCGGTTCACTACGTTGTCTGCGTAGGGA TGATGCATCGAGCTGCTGTGGCCGCATGCGTAGTTTCCCCCACCAACACT CGTTGTGCAAGGATAACATAATAGCTAGCCAGCTCTTGGTTCAACCCTGT GAAACGTAGGCGGGGTCGGTGAACACTCGGCAAGTCGCTCCCTCTTGGTG TTGTAGAGATGCGAGATAAATGGTCTGCCTACATCAATGGCATTCGATTG CTCTCTTGGCACCGATGTCTCACTCGGTCGCGAACAGGGTGCTGTCGATG CAGTTCGAGAAGAGCATCGAGGAGATGGTTGAGCACGGCTGGGACGAGGA GGTGGCGCGCAAGGCGCTCTTGATGCAGTGGCAGAAGGATATCGAGGGCA AGGGCGGCAGCCGCAAGGACCAGAAGCAGTTCGAGAAGACCGTCCAGGTG CAAGCAACCACGACAGACTGACAATTGATTGCGAAGGGATGGATGGCTTG ACTGAAGCAACAGCCAACAGCTTCATAGGCAACAAGACGAACAGCTCCAT TGACAAACGCCTTGTTCGCGACGGATACAACTCCGTTGCCAAGATGGCTG ACGATTGATTGCAACGCGATGGACGGCGTGATTGATGAAACCGCCAGCGC CACAGACGAATCATGCCCTGTGGCGGACGCATACTTCATTGGTGATTTTT GTTGGTGTTAACAAAGATCCATCGTGTTGTGGAACTGGTGATCAGGTTGC CTGCCTGAATGCGGCGATCGTCCAAGAGCCACCACATTGTGTCCTCTTGC GAAAGCAGGGTGGGCAATGCTGAGCCGCTCTATGTGAAACAGTTGCCGCC AAGCTGTTGCTTCGACCGCATTCGCTCGACGAACTTGGCGCGAGCGGACC TTGAACCATGTCATGCTGGCCTATTATGTTAGCTTTGGTGTGTGCTAATG TTGTGCCCGCTCCCGACGTTGTCTTCACTCAGGGTGTGCACCAGAAGGGT GTGAAGGAGGGCAAGGCTAGCACCACCAAGAAGAACGAACCCCCCGCGCC CACGCCAGCGAAGCGCGAGGACGTGGTGTTCGAGGTCACGGACAAGACGC TGCAGAAGGTGCGACCCCCGTACTCCATCCCTTCCCTCGGAATTACTCTA TTTCAGTACAGCCTGGTCCTCGTGCGATGGCTCATTTTTTCCCTAGTGAC GTTATATATTCACGACGATACCTTCTGTTGATATTGAATTTTGGATGCCT CTCCTCGGTATTTAGTGTTCGATGACGAACTAGGAAACACGCGGTCTCTC TATCGTTGCTATTGCGGATGATGGGTCGTTTCATGTTGTGGGGCGCGTTA GGGGGTGCCCTTTTTGCGCGTATGAGTGACGGAACGTCCACTTCGTTCCC TTCTTTTTAGTCTCCCGAGCGACGTCCGTTGATGTTTCTTCTTCCAGGTG GTTCTCGAGTCTCCCGTGCCGGTCATCCTGGACATCTACGCCGAGTGGTG CGGCCCTTGCAAGCAGCTCACGCCGGCTCTCGAAGAGGTTCGTGGCAAAC ATGTGTAGTGGACGACCTTTCGTACTTGGCGAGATAGCGTCCAGCTCATT TTTGACGGCTATCGATTTTGATCTGTGAAAACAATGGTTGTCAATGGGTA TATCTTTCTGCCTTCGACCCAACCCTTGTGTCTTGACCTGAAAGTAATTT TAGCTTCCATCAACGTTGTTTTCACCGAGCCCGATTTCTTCCAGTGTTTC ACCTACGTTTGACACTTCCCAGGCACTTTCCATTGACACTCTGGTTTTTC ATTGTAGACTATGCCGTTGGTGCGTTGTTCTTGTTCCCACCACTCGCAGT GTCGATGTGAATGTGTCGTTGCACGAGCAGTCTTGGTGTTGACTCTTTCT TGCATTCAACGCCCAACCAAGGTTAACTGTGGTATGCCCGATGTATTGGA TGCGGATGCGACGAAACAGAGAGCATGGCCAGAAGAAACAATGCAATATT TAAATTTATAAAGTGTCGAACACAATTGTCGCTTGCCTTTAGGCGGCCAT GAGATCTGGAGGCATGTTCCGGGTGGCCAAGGTGGACGCCGAGAAGCAGA GGAGCATCGCTGAAGTGCTGGGCATCCACGCCTTTCCCTCCGTGTTCGGC ATGAAGGACGGTATTATCTTGGACAACTTCGTCGGGGGGCTTGCGCAGGA CGAGGTATGCAGTAGGTGTGTGGTCTAGTCACTATCTGCTGATGCCCCAG GCGCGGCTTACCAGGAGTGTGAGGAGAGGGGTAGGCCGTGCCACCAAGCC CCCTTGGAGAGGGTATTGTAGTGGCCTCCAGAAATGCAAGCTGTTTTAGA TAGTCTTGTATTATGTAGGAAGAGTCGTTTTCGTGCCGATGCGTCTATCA GCGGGGGGTGACGACGACGACAACGATGATGATGATGACATCATACTCGC TGCTTGGCATGCCTTGGCAGTTGGTTGTCGAAGAGGGTTGGGTTCGTGAG ATATGCTTACTGTCGCGAGACGTGGCTCCAGTGTTCGAAGGCCTTTGGAC GAATGTGGACGTCGCTTCGGGAGAGGATGAGCTTTGGAACTTACTTGATG GTCTGCTTCGCGTGGCGTGATGTGACGCCAGTGTTATGCCCTGTACACGT CAAGGTCTGCTCCGAGAATGCTCTACACGTAGATATGCTCCCAAGCTTCC GCATGGATGCGACGATGTACCGTAGCGTCGATCGCGTCGTGGATGCATGA ATAACTTTGTCCGACCCCTGAGAGACTAGCAGAAGTCGTCTGGTGGGATC AAAGTCGCCCTGCACATGCTGCACGTATGGCGATGCTGTACGTGGGTCCG TTACCCCCTCGATATCTGTCGCTCCTCATCGCCCTGAACGTGCTTGTGTT TTTCTTTGCGGCGGCTTCAGATTTTGCCAAAGGGATAGCTGCTGACTCAT CAGCAACCGCCCTTGTGTATCCAACCCTTGATTGAATGAATCTTGTGGTT CAGATGCAGTCCTTCATGATGGGCGTGGTGATGGGGATGCCGCCACCCAA GGACCAGGCGCTGCGGGAACACCAGAAGAGCCAGGCGGAGCTCAGGGGCA TCAGCCGGAAGTTGGCTCATGTGGCAGGTTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12447:744..4575-

>mRNA_Ecto-sp13_S_contig12447.2028.1 ID=mRNA_Ecto-sp13_S_contig12447.2028.1|Name=mRNA_Ecto-sp13_S_contig12447.2028.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=924bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12447:744..4575- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTGGGAGGTGGAGGAGTCAACCGCCGCGCTTGAGGCGTCCGGGGG
AGACGTCGTGGCAGCCGCTGAGGCTCTCGCCGCCCAGGAGGAAGAGGACC
TGGAAAGGTACGAGGAAGGGCTCGCCGACCTGCAGCAGCGGGGGTGGGAC
TCTGACGTGGCCATGTCCGCCATGAGAGAGGCCGGCGGCAATAGCACGGA
GGCGTTGCACGCCCTCGAGGAGGAGGACAGGCGAGTCTCCCCGCAGGGAG
GAGCTGCGGTGCTGTCGATGCAGTTCGAGAAGAGCATCGAGGAGATGGTT
GAGCACGGCTGGGACGAGGAGGTGGCGCGCAAGGCGCTCTTGATGCAGTG
GCAGAAGGATATCGAGGGCAAGGGCGGCAGCCGCAAGGACCAGAAGCAGT
TCGAGAAGACCGTCCAGGGTGTGCACCAGAAGGGTGTGAAGGAGGGCAAG
GCTAGCACCACCAAGAAGAACGAACCCCCCGCGCCCACGCCAGCGAAGCG
CGAGGACGTGGTGTTCGAGGTCACGGACAAGACGCTGCAGAAGGTGGTTC
TCGAGTCTCCCGTGCCGGTCATCCTGGACATCTACGCCGAGTGGTGCGGC
CCTTGCAAGCAGCTCACGCCGGCTCTCGAAGAGGCGGCCATGAGATCTGG
AGGCATGTTCCGGGTGGCCAAGGTGGACGCCGAGAAGCAGAGGAGCATCG
CTGAAGTGCTGGGCATCCACGCCTTTCCCTCCGTGTTCGGCATGAAGGAC
GGTATTATCTTGGACAACTTCGTCGGGGGGCTTGCGCAGGACGAGATGCA
GTCCTTCATGATGGGCGTGGTGATGGGGATGCCGCCACCCAAGGACCAGG
CGCTGCGGGAACACCAGAAGAGCCAGGCGGAGCTCAGGGGCATCAGCCGG
AAGTTGGCTCATGTGGCAGGTTAG
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