mRNA_Ecto-sp13_S_contig12438.2023.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12438.2023.1
Unique NamemRNA_Ecto-sp13_S_contig12438.2023.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JHT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT8_9PHAE)

HSP 1 Score: 283 bits (725), Expect = 1.270e-85
Identity = 175/454 (38.55%), Postives = 234/454 (51.54%), Query Frame = 1
Query:   73 DGNPVGRRGAGKVFGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAA-VTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKF-----------------------------------RSVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            DG PVG  GA KV  +  K   +W   E +L     +     K + +H G +  T  AE      ++      A  +    VM KLL   P   GGMP+   PE+   F+  +N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K                                     SV  ++FE + NMDQ P+Q +M  ETT++ TGAK  RISTGG  EK R+T+VL V  DG+KV PRII++GTPF                           R   G+P  G+S GVQ+  W D  + + W++  +  RP + S   +RP +LVLDDF+CH +E F   L   A T V+   GGLTP+ QPLDR +NK+ KR  R KYT +        RSG +  P RG+V+TW KE W  I+ +T+ +  K+CGLTL L GSEDH
Sbjct:  113 DGQPVGNNGAAKVLQVPRKRIIEWLKPEAQLREKVSANPKLSKAKQVHSGGKVSTVDAEQPFPCGLHQRATQAAPRLGNREVMNKLLELKPDALGGMPANAKPEEAIDFKFKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLCEALVKRAGEIYARRHPPAPDESPIKGEDLNSEQLASVEAEVFEEVGNMDQMPVQHEMPVETTLDKTGAKDARISTGGGNEKERFTLVLAVTADGKKVSPRIIFEGTPFIPPTVSGKGKSTRPRKNPVAWEMHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPRILVLDDFKCHNDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSPSAVADARSGKLKPPERGVVSTWCKEAWESITPETVKTCSKICGLTLALDGSEDH 566          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JTG5_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTG5_9PHAE)

HSP 1 Score: 276 bits (707), Expect = 1.240e-83
Identity = 175/458 (38.21%), Postives = 234/458 (51.09%), Query Frame = 1
Query:   85 VGRRGAGKV-FGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGSSPRDR---------RPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            VG +G+  +   +  K   +W  QEG+L     +     K + +H G ++ T  AE A+ D IN  RK         VM KLL   P   GGMP+   PE+   F+  +N+WY RF KR+ FSI+R+ SVGQK P+G+EG AWA + K R  L K                                   +FE L NMDQTP+Q +M  ETT+E TG K  RISTGG+ EK R+T+VL V  DG+ V P II+KGTPF                           R   G+P  G+S GVQ+  W    + + W+   +   P +    R         RP +LVLDDF+CH++E F   L   A T V+   GGLTP+ QPLDR +NK+ KR  R KYT +        RSG +  P RG+V+TW KE W  ++++T+ + FK+CGLTL L GSEDH
Sbjct:   77 VGGKGSYPIRLQVPRKRIIEWLKQEGQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYINEQRKLHRGCGNREVMNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRASVGQKLPKGYEGMAWATVTKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQPASVEAEVFEELGNMDQTPVQHEMPVETTLEDTGGKDARISTGGK-EKERFTLVLAVMADGKMVSPCIIFKGTPFIPPTVSGKGKSTLPRKNSVAWEVHPANRAKHGHPANGMSFGVQEKSWSGQQECNGWIPGSWKLCPNNGSMXRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALNRDANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSAPAVADARSGKLKPPERGVVSTWCKEAWEFVTSETVNTCFKICGLTLALDGSEDH 533          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KRZ8_9PHAE (DDE-1 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRZ8_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 7.530e-83
Identity = 184/489 (37.63%), Postives = 244/489 (49.90%), Query Frame = 1
Query:    7 GRSAHENMQKLEVLKYSRSKC-ADGNPVGRRGAGKVFGIDPKLARDWETQEGEL--VAFSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF--RTSFGYPPAGISLGVQKSW--------------------------------------WCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            G+ ++    KL    Y+R  C  DG PVG  GA  V  +  K   +W  QE +L     +     K + +H G ++ T  AE A+ D +N  RK         VM KLL   P   GGM +   PE+   F+  +N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K R  L K                                   +FE L NMDQTP+Q +M  ETT+E TGAK  RISTGGE EK R+T+VL V  DG+KV PRII+KGTPF   T  G   + +      +W                                      W D  + + W+   +  RP + S   +RP +LVLDDF+CH++E F   L   AKT V+   GGLT + QPLDR +NK+ KR  R KYT          RSG ++ P  G+V+TW KE W  I+++T+ + FK+CGLTL L GSE H
Sbjct:   79 GKGSYPIRFKLNAATYTRKICPCDGQPVGNNGAAIVLQVPWKRIIEWLKQEEQLREKVSANPKLSKAKQVHSGGKASTVDAEQALVDYMNEQRKQHRDCGNREVMNKLLELKPDALGGMSTNAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGE-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPTVSGKVKSTLPRKNSVAWEIHSANXARSGCHGGRQNDVSPRIIFKGTPFIPPTEKSWSDQRECNGWIPGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRGAKT-VIFIPGGLTSLLQPLDRMLNKQMKRLLRGKYTACSASAVADARSGKLNPPEHGVVSTWCKEAWESITSKTVETCFKICGLTLALDGSEHH 565          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K6L9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6L9_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 8.670e-81
Identity = 156/372 (41.94%), Postives = 203/372 (54.57%), Query Frame = 1
Query:  310 MAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            M KLL   P   GGMP+   PE+   F+  +N+WY RF KR+ FSI+R+TSVGQK P+G EG AWA + K R  L K                                   +FE L NMDQTP+Q ++  ETT+E TGAK  RISTGG+ EK R+T+VL V  DG+KV PRII+KGTPF                           R   G+P  G+S GVQ+  W D  + + W++  +  RP + S   +RP +LVLDDF+CH++E F   L   A T V+   G LTP+ QPLDR +NK+ KR  R KYT +        RSG +  P RG+V+TW KE W   + +T+ + F +CGLTL L GSEDH
Sbjct:    1 MNKLLELKPDALGGMPANAKPEEALAFKVKFNSWYQRFRKRNGFSIRRRTSVGQKLPKGDEGMAWATVMKLREALVKRAGEIYARRHPPAPDESPIKGEDLTSEQLASVEAEVFEELGNMDQTPVQHEIPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFTPPTVSGKGKSTLPRKNSVAWEIHPANRAKHGHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGRLTPLLQPLDRMLNKQMKRLLRRKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESSTPETVKTCFMICGLTLALDGSEDH 371          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K8Y4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Y4_9PHAE)

HSP 1 Score: 267 bits (682), Expect = 1.730e-76
Identity = 171/461 (37.09%), Postives = 231/461 (50.11%), Query Frame = 1
Query:   34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVA--FSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWI----RDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTL 1206
            KL+V+ ++R  C DG P G  GA KV  +  +   +W   E  L A   +     K + +H   ++     E A+ + IN  RK+         M KLL   P   GG+ +   PE+       + +WY RF KR++FSI+R+TSVGQK P+G EG AWA + K R  L +                                   +FE L NMDQTP+Q +M  ETT+E TGAK  RI+TGG+ EK R+T+ L V  DG+KV  RII+KGTPF                           R+  G P  G+S GVQ+  WCD  +   W+   +  RP  GS  R RR  +LVLDDF+CH+++ F   L   A T V+   GGL P+ QPLDR +NK+ KR  R  YT       RD   ++G +  P RG VATW K  WA I+ + + + FK+CGLTL
Sbjct:   61 KLKVVAFTRVVCEDGKPGGNSGAAKVLDVPRRRIVEWVRDEESLRAKVSANPKLSKAKQIHARGKASRADIEEALVEFINDQRKHHVGCGSMAAMNKLLELKPDALGGLAAKPKPEEALALNSKFKSWYQRFCKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLENTGAKDARIATGGK-EKERFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVGGMSFGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLIPLFQPLDRMLNKQMKRLLRGMYTAHTAKAARDP--KTGKLVPPGRGAVATWCKNAWASITPEIVKTCFKICGLTL 517          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5JUK2_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUK2_9PHAE)

HSP 1 Score: 251 bits (641), Expect = 5.350e-76
Identity = 156/401 (38.90%), Postives = 205/401 (51.12%), Query Frame = 1
Query:  310 MAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFR-----------------------------------SVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSY-----------------------------FKVCGLTLNLRGSEDH 1230
            M KLL   P   GGM +   P +   F+   N+WY RF KR+ FSI+R+TSVGQK P+G+EG AWA + K R                                   SV  ++F+ L NMDQTP+Q +M  ETT+E TGAK  RISTGG+ EK R+T+VL V  DG+KV PRII+KGTPF                           R    +P  G+S GVQ+  W D  + + W++  +  RP + S   +RP +LVLDDF+CH++E +   L   A T V++  GGLTP+ QPLDR +NK+ KR  R KYT +        RSG +  P RG+V+TW KE W  I+ +T+ S                              FK+CGLTL L GSEDH
Sbjct:    1 MNKLLELKPNALGGMSANAKPTEALAFKVKINSWYQRFRKRNGFSIRRRTSVGQKLPKGYEGMAWATVMKLREALVRRAGEIYARRHPPAPDESPIKGEDLTFEQLASVEAEVFKELGNMDQTPVQHEMPVETTLEKTGAKDARISTGGK-EKERFTLVLAVMADGKKVSPRIIFKGTPFIPPAVSGKGKSTLPRKNSVAWEIHPANRAKHDHPANGMSFGVQEKSWSDQRECNGWISGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGYIAALKRDANTIVIVIPGGLTPLLQPLDRMLNKQMKRLLRGKYTAYSASAVADARSGKLKPPERGVVSTWCKEAWESITPETVSSVRKERFALGDVRAWSGENPACSVXETVKTCFKICGLTLALDGSEDH 400          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5K583_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K583_9PHAE)

HSP 1 Score: 243 bits (619), Expect = 7.050e-68
Identity = 174/513 (33.92%), Postives = 229/513 (44.64%), Query Frame = 1
Query:   34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVAFSKQSA--GKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFR-----------------------------------SVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPG-SSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKY------------------------------------------------TIWIRDNFG--RSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSED 1227
            KL   +++R  C DG PVG  GA KV G+D +    W  +E  +    K+     K +S+H G    T + E  +ED IN                    ++   AG         ++  FR  +  WY+ F +RH FSI+R+TSVGQK P G+EG A+A + K R                                   SV  K+FE L NMDQTP+Q +M  ETT+E  G K  RISTGG+ EK R+T  L V  DG KV  RII+KG PF                           RT FGYP +G+   VQ+  WCD  +   W+++ +  RP   S   +R S+LVLDDFRCHR E F + L     T V++  GGLTP+ QPLDR +NKE KR  R                                                   T ++       ++G +  P RGLV+T  KE WA I+ +T+   FKVCGLTL L GSED
Sbjct:    4 KLTAAEFTRVLCEDGQPVGNSGAAKVLGVDRRRVITWIGEEATMKKLVKEKPKLSKAKSIHVGMAPTTAEVEQDLEDCINE-------------------QLAASAG---------EILAFRTKFKNWYHCFRERHGFSIRRRTSVGQKLPTGYEGLAFATLMKLRTALLERAGEIYARRNPPASGESPIKGKDLTPAQLESVAAKVFEELGNMDQTPVQQEMPVETTLEKRGVKDARISTGGK-EKDRFTPCLAVMADGGKVPQRIIFKGKPFIPPSTAGREKNTQTRKGYIAAEVLLANRTKFGYPVSGMFFVVQEKSWCDARECTLWLSESWRFRPNHGSVIKQRHSILVLDDFRCHRSESFVKDLRRRTNTTVILIPGGLTPLLQPLDRMLNKEMKRLMRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTQYMASAIADPKTGKLQPPGRGLVSTRYKESWAAITPETVKMCFKVCGLTLALDGSED 487          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KEE8_9PHAE (DDE-1 domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEE8_9PHAE)

HSP 1 Score: 225 bits (574), Expect = 2.410e-64
Identity = 156/467 (33.40%), Postives = 213/467 (45.61%), Query Frame = 1
Query:   34 KLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVA--FSKQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKR--GFRAKYTIWIRDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            KL+ + ++R  C DG PVG  GA KV  +  +   +W   E  L A   +     K + +H G ++ T   E A+ + IN  RK+       L                           F+  + +WY RF KR++F+I+R+TSVGQK P+G EG AWA + K R  L +                                   +FE L NMDQTP+Q               H R + G E E  R+T+ L V  DG+KV  RII+KGTPF                           R+  G P  G+S GVQ+  WCD  +   W+   +  RP  GS  R RR  +LVLDDF+CH+++ F   L   A T V+   GGLTP+ Q LDR +NK+ KR                 ++G ++ P RG VATW K  WA I+ +T+ + FK+CGLTL L GSEDH
Sbjct:   74 KLKAVAFTRVVCEDGKPVGNSGAAKVLDVPRRRIVEWVRDEESLRANVSANPKLSKAKQIHAGGKASTADIEEALVEFINDQRKHHVGCEEALA--------------------------FKSKFKSWYQRFRKRNKFNIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQ---------------HERDAGGKEKE--RFTLCLAVSADGKKVPLRIIFKGTPFVPPATPGKGKATQPRKNSIAWEVLPANRSKHGLPVEGMSFGVQEKSWCDLRECKLWIKGSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALKREANTIVIFIPGGLTPLLQLLDRMLNKQMKRLLXXXXXXXXXXXXXXPKTGKLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 496          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KII4_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KII4_9PHAE)

HSP 1 Score: 212 bits (540), Expect = 7.900e-61
Identity = 119/268 (44.40%), Postives = 158/268 (58.96%), Query Frame = 1
Query:  514 QKFRSVLRKIFELLYNMDQTPIQADMRSETTVETTGAKHVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPF---------------------------RTSFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRPGS-SPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRD-NFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            ++  SV  ++FE L NMDQTP+Q +M  ETT+E TGAK  R+STGGE EK R+T+VL V  DG+KV  RII+ GTPF                           R   G+P  G+S GVQ+  W D  + + W +  +  RP + S   +RP +LVLDDF+CH++E F   L   A T V+   GGLTP+ QPLDR +NK+ KR  R+KYT +       RSG +  P RG+V+TW K  W  I+ +T+ + FK+CGLTL L GSEDH
Sbjct:   38 EQLASVEAEVFEDLGNMDQTPVQHEMPVETTLEKTGAKDARVSTGGE-EKERFTLVLAVTADGKKVSLRIIFMGTPFIPPTVSGKGKSTLPRKNSVAWEMHPTNRAKHGHPANGMSFGVQEKSWSDQRECNGWTSGSWKLRPNNGSIVQQRPCILVLDDFKCHKDEGFIAALKRDANTIVIFIPGGLTPLLQPLDRMLNKQTKRLLRSKYTAYSASATDARSGKLKPPERGVVSTWCKGAWESITPETVKTCFKICGLTLALDGSEDH 304          
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Match: A0A6H5KYG9_9PHAE (DDE-1 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYG9_9PHAE)

HSP 1 Score: 215 bits (548), Expect = 2.360e-60
Identity = 152/413 (36.80%), Postives = 204/413 (49.39%), Query Frame = 1
Query:  196 QRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLAEMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKKPEGWEGKAWAFIQKFRSVLRK-----------------------------------IFELLYNMDQTPIQADMRSETTVETTGAKHVRISTG-GE----------------------AEKLRYTVVLTVRGDGQKVLPRIIYKGTPF--RT--SFGYPPAGISLGVQKSWWCDGTQSDDWVTQDFTRRP--GSSPRDRRPSVLVLDDFRCHREEKFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTI----WIRDNFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSEDH 1230
            +RS   G+++D    E A+ + IN  RK+        VM KLL   P   GG+ +   PE+   F+  + +WY RF KR++FSI+R+TSVGQK P+G EG AWA + K R  L +                                   +FE L NMDQTP+Q +M  ETT+E  GAK  RI+TG GE                      + ++R +  L   G               +  RT  S G P      GVQ+  WCD  +   W+   +  RP  GS  R RR  +LVLDDF+CH+++ F   L   A T V+   GGLTP+ QPLDR +NK+ KR  R  YT       RD   ++GN++ P RG VATW K  WA I+ +T+ + FK+CGLTL L GSEDH
Sbjct:  115 ERSGAVGKKADI---EEALVEFINDQRKHHVGCGSMAVMNKLLELKPDALGGLTAKPKPEEALAFKSKFKSWYQRFRKRNKFSIRRRTSVGQKLPKGHEGMAWATLMKLRKALLERAGEIYAQRYPPAPGESPIRGEDLSSSQLELVTDELFEELGNMDQTPVQHEMPVETTLEKAGAKDARIATGAGEKRRNASRSAWLPRRMARSRLASSSRVRLSFRLPRPGXXXXXXXXXXXXXXXYFPRTAPSTGSPWEACPSGVQEKSWCDLRECKLWIKDSWKLRPNNGSIVRQRR-CILVLDDFKCHKDDGFIAALNKEANTIVIFIPGGLTPLLQPLDRMLNKQMKRLLRGMYTANTAKAARDP--KTGNLAPPGRGAVATWCKNAWASITPETVKTCFKICGLTLALDGSEDH 521          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12438.2023.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHT8_9PHAE1.270e-8538.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTG5_9PHAE1.240e-8338.21DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KRZ8_9PHAE7.530e-8337.63DDE-1 domain-containing protein n=3 Tax=Ectocarpus... [more]
A0A6H5K6L9_9PHAE8.670e-8141.94DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K8Y4_9PHAE1.730e-7637.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JUK2_9PHAE5.350e-7638.90DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K583_9PHAE7.050e-6833.92Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KEE8_9PHAE2.410e-6433.40DDE-1 domain-containing protein n=2 Tax=Ectocarpus... [more]
A0A6H5KII4_9PHAE7.900e-6144.40DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5KYG9_9PHAE2.360e-6036.80DDE-1 domain-containing protein n=1 Tax=Ectocarpus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12438contigEcto-sp13_S_contig12438:2643..4622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeMetazoa
Stop0
Start1
Seed ortholog score175.6
Seed ortholog evalue4.5e-41
Seed eggNOG ortholog13735.ENSPSIP00000006614
Model size1230
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Brinker DNA-binding domain
EggNOG OGs38I47@33154,3BMCH@33208,3CYY1@33213,48700@7711,4949I@7742,4CCEH@8459,KOG3105@1,KOG3105@2759
Cds size1203
COG Functional cat.BD
Best tax levelTestudines
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.353746-UTR-Ecto-sp13_S_contig12438:2642..26691681462662.353746-UTR-Ecto-sp13_S_contig12438:2642..2669Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12438 2643..2669 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462662.3654244-CDS-Ecto-sp13_S_contig12438:2669..31761681462662.3654244-CDS-Ecto-sp13_S_contig12438:2669..3176Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12438 2670..3176 +
1681462662.3763204-CDS-Ecto-sp13_S_contig12438:3299..34221681462662.3763204-CDS-Ecto-sp13_S_contig12438:3299..3422Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12438 3300..3422 +
1681462662.3842306-CDS-Ecto-sp13_S_contig12438:3971..40581681462662.3842306-CDS-Ecto-sp13_S_contig12438:3971..4058Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12438 3972..4058 +
1681462662.3936558-CDS-Ecto-sp13_S_contig12438:4136..46221681462662.3936558-CDS-Ecto-sp13_S_contig12438:4136..4622Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12438 4137..4622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12438.2023.1prot_Ecto-sp13_S_contig12438.2023.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12438 2670..4622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12438.2023.1

>prot_Ecto-sp13_S_contig12438.2023.1 ID=prot_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=401bp
MQKLEVLKYSRSKCADGNPVGRRGAGKVFGIDPKLARDWETQEGELVAFS
KQSAGKQRSLHPGRESDTQKAEAAVEDEINTLRKNGAAVTRDLVMAKLLA
EMPTFAGGMPSADDPEKMEKFRRLYNAWYYRFLKRHRFSIQRKTSVGQKK
PEGWEGKAWAFIQKFRSVLRKIFELLYNMDQTPIQADMRSETTVETTGAK
HVRISTGGEAEKLRYTVVLTVRGDGQKVLPRIIYKGTPFRTSFGYPPAGI
SLGVQKSWWCDGTQSDDWVTQDFTRRPGSSPRDRRPSVLVLDDFRCHREE
KFQQKLASMAKTQVVMRGGGLTPVCQPLDRNINKEFKRGFRAKYTIWIRD
NFGRSGNVSAPSRGLVATWVKEVWAGISAQTILSYFKVCGLTLNLRGSED
H
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mRNA from alignment at Ecto-sp13_S_contig12438:2643..4622+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12438.2023.1 ID=mRNA_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1980bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12438:2643..4622+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAAAGCGGGCGCAGCGCACACGAGAACATGCAGAAGCTGGAGGTACTGAA GTACAGCCGGAGCAAGTGTGCCGATGGGAACCCAGTCGGAAGGCGTGGTG CTGGGAAGGTGTTCGGCATCGATCCGAAGCTTGCCCGGGATTGGGAGACC CAGGAGGGGGAGCTTGTGGCGTTTTCCAAGCAGAGCGCAGGCAAGCAGCG GTCGTTACACCCTGGACGCGAGTCTGACACACAGAAGGCGGAGGCGGCGG TGGAGGACGAGATCAACACCCTCAGGAAGAACGGTGCTGCTGTGACCCGG GACCTCGTCATGGCCAAGCTACTCGCCGAGATGCCAACCTTTGCAGGGGG CATGCCGTCCGCAGACGATCCCGAGAAGATGGAAAAATTTCGGAGGCTTT ACAACGCCTGGTACTACAGGTTCCTCAAGCGGCACCGGTTCTCGATCCAA CGCAAGACAAGCGTGGGGCAGAAGAAACCGGAAGGATGGGAGGGCAAGGC GTGGGCGTTCATCCAGAAGTTTCGCTCGGTGCTAGTTCGGCACGCGGAGG AAGCCGTTATCGTGGAGAGAGCAGCCCAGGCAGCGAAGAACGGAGGGACC GTTGAGATCGAGATCGAAGGCAGCCCGCCGACTGCGGAGGAACTTCTGGC TGTTGAGCGCAAGATCTTCGAGCTGCTCTACAACATGGACCAGACCCCGA TCCAGGCTGACATGCGTTCGGAGACCACGGTGGAGACGACTGGTGCGAAG CACGTTCGTATCTCGACAGGAGGTGAGGCGGTGTGCTGTGTTGAGTTCAA ACCCAAGACGATTGAGATTTTGATATTTTTCTGGCAAATATCAAATTTGC CGACAGTGGAAATACGGGGAATAAGGATTTTGTGCATGGCTTCTGCCGTC ACGCTCGTCATCGTTCCGCGCACACCCGTTTTGCGTTCTTCTTCTTACAT ATGTACAGGTGCCGCGGTAAAGAGCATAAATCCTACACTTTTTCTGATTG TGTCTCGTTCGTTTATCCGACTTGCACTTTGTTTTCTTTTATCGGCGATT TATATAATTAATTATGTACTTCGAAGTACGCATACCGGTACCTACGGATA CCTATTTATATGTGTGGTGTTTTTTTATTATATTTTTTAATGTTGTGTTT TTTGCTGCAGTGAAAATGTACCTTGCTAGGCTAATGTGTTGTTTTGTTCG TCAATTGTTGCTGCTGTAGGTATGGTTGACTACCGTTGTTCCTCTCGTTA TTTTATTAACGGGGTATTATTTTTTGAACTCAATTTTCGTTGTTTACATG CCTAAATGACTATTTTCACACCAGGCAAGGAGAAGCTGCGGTACACCGTT GTGTTAACCGTCAGGGGTGATGGGCAGAAGGTGCTGCCGCGCATCATCTA CAAGGGGACCCCTTTCGTCGGGGGTACCAACAAGTCGGGCTCGTCCAAGA AGCCGGGCAAGAACAGCCTGTCGTACGAGCACCTCGCAGACAAGCGGACG TCCTTCGGCTACCCTCCTGCCGGCATCAGCCTCGGGGTGCAGAAGTCGTG GTGGTGCGACGGCACTCAGTCGGACGACTGGGTAACCCAGGACTTCACGC GCCGACCAGGTTCTAGCCCCCGAGACCGGCGTCCCAGCGTTCTCGTGCTC GACGACTTCAGGTGTCACCGGGAAGAGAAGTTCCAACAGAAGCTGGCGAG TATGGCGAAGACGCAGGTGGTGATGCGTGGGGGAGGGCTGACCCCGGTGT GCCAGCCGCTCGACCGGAACATCAACAAGGAGTTCAAGCGAGGCTTTCGG GCCAAGTACACCATCTGGATCCGGGACAACTTCGGGCGCTCGGGGAACGT GTCCGCGCCGAGCAGGGGGCTGGTCGCGACGTGGGTAAAGGAAGTGTGGG CCGGCATCTCGGCGCAGACCATCCTCTCGTACTTCAAGGTCTGCGGTCTC ACACTCAACCTTCGCGGCAGCGAGGACCAT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12438:2643..4622+

>mRNA_Ecto-sp13_S_contig12438.2023.1 ID=mRNA_Ecto-sp13_S_contig12438.2023.1|Name=mRNA_Ecto-sp13_S_contig12438.2023.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1203bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12438:2643..4622+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCAGAAGCTGGAGGTACTGAAGTACAGCCGGAGCAAGTGTGCCGATGG
GAACCCAGTCGGAAGGCGTGGTGCTGGGAAGGTGTTCGGCATCGATCCGA
AGCTTGCCCGGGATTGGGAGACCCAGGAGGGGGAGCTTGTGGCGTTTTCC
AAGCAGAGCGCAGGCAAGCAGCGGTCGTTACACCCTGGACGCGAGTCTGA
CACACAGAAGGCGGAGGCGGCGGTGGAGGACGAGATCAACACCCTCAGGA
AGAACGGTGCTGCTGTGACCCGGGACCTCGTCATGGCCAAGCTACTCGCC
GAGATGCCAACCTTTGCAGGGGGCATGCCGTCCGCAGACGATCCCGAGAA
GATGGAAAAATTTCGGAGGCTTTACAACGCCTGGTACTACAGGTTCCTCA
AGCGGCACCGGTTCTCGATCCAACGCAAGACAAGCGTGGGGCAGAAGAAA
CCGGAAGGATGGGAGGGCAAGGCGTGGGCGTTCATCCAGAAGTTTCGCTC
GGTGCTACGCAAGATCTTCGAGCTGCTCTACAACATGGACCAGACCCCGA
TCCAGGCTGACATGCGTTCGGAGACCACGGTGGAGACGACTGGTGCGAAG
CACGTTCGTATCTCGACAGGAGGTGAGGCGGAGAAGCTGCGGTACACCGT
TGTGTTAACCGTCAGGGGTGATGGGCAGAAGGTGCTGCCGCGCATCATCT
ACAAGGGGACCCCTTTCCGGACGTCCTTCGGCTACCCTCCTGCCGGCATC
AGCCTCGGGGTGCAGAAGTCGTGGTGGTGCGACGGCACTCAGTCGGACGA
CTGGGTAACCCAGGACTTCACGCGCCGACCAGGTTCTAGCCCCCGAGACC
GGCGTCCCAGCGTTCTCGTGCTCGACGACTTCAGGTGTCACCGGGAAGAG
AAGTTCCAACAGAAGCTGGCGAGTATGGCGAAGACGCAGGTGGTGATGCG
TGGGGGAGGGCTGACCCCGGTGTGCCAGCCGCTCGACCGGAACATCAACA
AGGAGTTCAAGCGAGGCTTTCGGGCCAAGTACACCATCTGGATCCGGGAC
AACTTCGGGCGCTCGGGGAACGTGTCCGCGCCGAGCAGGGGGCTGGTCGC
GACGTGGGTAAAGGAAGTGTGGGCCGGCATCTCGGCGCAGACCATCCTCT
CGTACTTCAAGGTCTGCGGTCTCACACTCAACCTTCGCGGCAGCGAGGAC
CAT
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