mRNA_Ecto-sp13_S_contig12427.2016.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12427.2016.1
Unique NamemRNA_Ecto-sp13_S_contig12427.2016.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A6H5K1P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1P9_9PHAE)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:   22 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA 141
            MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA
Sbjct:    1 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA 40          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: D8LMX5_ECTSI (Heat shock protein 40 like protein/ DnaJ domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMX5_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 1.240e-16
Identity = 40/40 (100.00%), Postives = 40/40 (100.00%), Query Frame = 1
Query:   22 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA 141
            MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA
Sbjct:    1 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA 40          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: F0Y9M6_AURAN (J domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y9M6_AURAN)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 28/47 (59.57%), Postives = 36/47 (76.60%), Query Frame = 1
Query:    1 LPPLEKRMKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA 141
            +PPLE       AAA+LGV VD   +T++AAYRRLA++WHPDKCK+A
Sbjct:  155 VPPLEDA---HVAAALLGVRVDDGEQTIRAAYRRLAIKWHPDKCKDA 198          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A7S1U9Q7_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U9Q7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.620e-8
Identity = 25/37 (67.57%), Postives = 31/37 (83.78%), Query Frame = 1
Query:   22 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKC 132
            M++E AA +LGV  + D +T+KAAYRRLALRWHPDKC
Sbjct:    4 MRIEDAARILGVEPNDDLDTIKAAYRRLALRWHPDKC 40          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A7S1UKL2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UKL2_9STRA)

HSP 1 Score: 47.8 bits (112), Expect = 1.470e-5
Identity = 21/32 (65.62%), Postives = 26/32 (81.25%), Query Frame = 1
Query:   43 AVLGVAVDADPETLKAAYRRLALRWHPDKCKE 138
            A LGVA DAD  T++ AYR++ALRWHPDK K+
Sbjct:   16 AALGVAPDADVSTMRKAYRKMALRWHPDKNKD 47          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A2U8H523_9RHOO (Molecular chaperone DnaJ n=1 Tax=Azoarcus communis TaxID=41977 RepID=A0A2U8H523_9RHOO)

HSP 1 Score: 49.3 bits (116), Expect = 1.660e-5
Identity = 23/36 (63.89%), Postives = 29/36 (80.56%), Query Frame = 1
Query:   22 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDK 129
            +K  AA  VLGVA DADP ++K A+RRLA+RWHPD+
Sbjct:    2 LKDVAAHDVLGVAADADPASIKKAFRRLAMRWHPDR 37          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A7S3NIB2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NIB2_9STRA)

HSP 1 Score: 48.9 bits (115), Expect = 2.300e-5
Identity = 22/39 (56.41%), Postives = 32/39 (82.05%), Query Frame = 1
Query:   22 MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKE 138
            MKL+ AA+VLGV  +   ++++AAYRRLA++WHPDK K+
Sbjct:    1 MKLKRAASVLGVNTEDGEQSIRAAYRRLAIKWHPDKNKD 39          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A1X0QVM7_RHIZD (DnaJ-domain-containing protein n=1 Tax=Rhizopus microsporus var. microsporus TaxID=86635 RepID=A0A1X0QVM7_RHIZD)

HSP 1 Score: 48.5 bits (114), Expect = 2.990e-5
Identity = 21/32 (65.62%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   43 AVLGVAVDADPETLKAAYRRLALRWHPDKCKE 138
            A+LGV  DAD ET+K AYR+LAL+WHPD+ K+
Sbjct:    7 AILGVPRDADDETIKKAYRKLALKWHPDRNKD 38          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A7S0E6R0_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E6R0_9EUKA)

HSP 1 Score: 46.6 bits (109), Expect = 3.110e-5
Identity = 20/32 (62.50%), Postives = 27/32 (84.38%), Query Frame = 1
Query:   46 VLGVAVDADPETLKAAYRRLALRWHPDKCKEA 141
            VLGVA DAD + +K AYR+LA+RWHPDK +++
Sbjct:   33 VLGVARDADEQQIKRAYRKLAVRWHPDKNRDS 64          
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Match: A0A7V1R1K6_9BACT (Chaperone protein DnaJ n=2 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A7V1R1K6_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 3.130e-5
Identity = 21/29 (72.41%), Postives = 27/29 (93.10%), Query Frame = 1
Query:   43 AVLGVAVDADPETLKAAYRRLALRWHPDK 129
            A+LGV+ DADPET+K AYRRLA+++HPDK
Sbjct:    7 AILGVSRDADPETIKRAYRRLAVQYHPDK 35          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12427.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K1P9_9PHAE1.240e-16100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LMX5_ECTSI1.240e-16100.00Heat shock protein 40 like protein/ DnaJ domain co... [more]
F0Y9M6_AURAN1.700e-859.57J domain-containing protein n=1 Tax=Aureococcus an... [more]
A0A7S1U9Q7_9STRA6.620e-867.57Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A7S1UKL2_9STRA1.470e-565.63Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
A0A2U8H523_9RHOO1.660e-563.89Molecular chaperone DnaJ n=1 Tax=Azoarcus communis... [more]
A0A7S3NIB2_9STRA2.300e-556.41Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A1X0QVM7_RHIZD2.990e-565.63DnaJ-domain-containing protein n=1 Tax=Rhizopus mi... [more]
A0A7S0E6R0_9EUKA3.110e-562.50Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A7V1R1K6_9BACT3.130e-572.41Chaperone protein DnaJ n=2 Tax=Bacteroidetes bacte... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12427contigEcto-sp13_S_contig12427:4599..4739 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score80.5
Seed ortholog evalue2e-13
Seed eggNOG ortholog2880.D8LMX5
Model size141
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.protein folding
EggNOG OGsCOG0484@1,KOG0714@2759
Cds size120
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.7725313-UTR-Ecto-sp13_S_contig12427:4598..46191681462661.7725313-UTR-Ecto-sp13_S_contig12427:4598..4619Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12427 4599..4619 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462661.785565-CDS-Ecto-sp13_S_contig12427:4619..47391681462661.785565-CDS-Ecto-sp13_S_contig12427:4619..4739Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12427 4620..4739 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12427.2016.1prot_Ecto-sp13_S_contig12427.2016.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12427 4620..4739 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12427.2016.1

>prot_Ecto-sp13_S_contig12427.2016.1 ID=prot_Ecto-sp13_S_contig12427.2016.1|Name=mRNA_Ecto-sp13_S_contig12427.2016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=40bp
MKLEAAAAVLGVAVDADPETLKAAYRRLALRWHPDKCKEA
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mRNA from alignment at Ecto-sp13_S_contig12427:4599..4739+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12427.2016.1 ID=mRNA_Ecto-sp13_S_contig12427.2016.1|Name=mRNA_Ecto-sp13_S_contig12427.2016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=141bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12427:4599..4739+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGCCGCCTCTCGAGAAAAGGATGAAGCTGGAAGCCGCCGCGGCGGTGCT CGGGGTGGCCGTCGACGCCGACCCGGAGACGCTCAAGGCGGCCTATCGAC GGCTGGCGTTGAGATGGCACCCGGACAAGTGCAAGGAGGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12427:4599..4739+

>mRNA_Ecto-sp13_S_contig12427.2016.1 ID=mRNA_Ecto-sp13_S_contig12427.2016.1|Name=mRNA_Ecto-sp13_S_contig12427.2016.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=120bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12427:4599..4739+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGCTGGAAGCCGCCGCGGCGGTGCTCGGGGTGGCCGTCGACGCCGA
CCCGGAGACGCTCAAGGCGGCCTATCGACGGCTGGCGTTGAGATGGCACC
CGGACAAGTGCAAGGAGGCC
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