mRNA_Ecto-sp13_S_contig1242.2008.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_Ecto-sp13_S_contig1242.2008.1
Unique Name	mRNA_Ecto-sp13_S_contig1242.2008.1
Type	mRNA
Organism	Ectocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)

Homology

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BLAST of mRNA_Ecto-sp13_S_contig1242.2008.1 vs. uniprot
Match: D7FQ92_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ92_ECTSI)

HSP 1 Score: 206 bits (524), Expect = 4.890e-58
Identity = 108/114 (94.74%), Postives = 110/114 (96.49%), Query Frame = 1

Query:  238 MARRNATGAQPLGRRKRKIGSDAACGGVVGGVLRRQATGGRGRRRSTGQSFVLSATGNFHRRLRKDLEGVPELIADVRKSLTSGDNAALFTAIIEVRSKLIEGNSAPFDLPIRS 579
            MARRNATGAQPLGRRKRKIGSDA CGGVVGGV RRQATGGRGRRRSTGQSFVLSATGNFHRRLR+DLEGVPELIADVRKSL SG NAALFTA+IEVRSKLIEGNSAPFDLPIRS
Sbjct:    1 MARRNATGAQPLGRRKRKIGSDADCGGVVGGVFRRQATGGRGRRRSTGQSFVLSATGNFHRRLRRDLEGVPELIADVRKSLISGANAALFTAVIEVRSKLIEGNSAPFDLPIRS 114

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BLAST of mRNA_Ecto-sp13_S_contig1242.2008.1 vs. uniprot
Match: A0A6H5L4F9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4F9_9PHAE)

HSP 1 Score: 199 bits (506), Expect = 6.500e-56
Identity = 105/114 (92.11%), Postives = 106/114 (92.98%), Query Frame = 1

Query:  238 MARRNATGAQPLGRRKRKIGSDAACGGVVGGVLRRQATGGRGRRRSTGQSFVLSATGNFHRRLRKDLEGVPELIADVRKSLTSGDNAALFTAIIEVRSKLIEGNSAPFDLPIRS 579
            MARRNATG QPLGRRKRKIGSDA CGGVVGGV RRQATGGRGRRRSTGQSFVLSATGNFHRRLRKDLEGVPELIADVRKSL S DNAAL  A+IEVRSKLIEGNSAPFD PIRS
Sbjct:    1 MARRNATGVQPLGRRKRKIGSDADCGGVVGGVFRRQATGGRGRRRSTGQSFVLSATGNFHRRLRKDLEGVPELIADVRKSLISRDNAALIAAVIEVRSKLIEGNSAPFDRPIRS 114

The following BLAST results are available for this feature:

BLAST of mRNA_Ecto-sp13_S_contig1242.2008.1 vs. uniprot

BLAST of mRNA_Ecto-sp13_S_contig1242.2008.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D7FQ92_ECTSI	4.890e-58	94.74	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A6H5L4F9_9PHAE	6.500e-56	92.11	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
Ecto-sp13_S_contig1242	contig	Ecto-sp13_S_contig1242:15507..16880 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 vs UniRef90	2022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.0	2022-07-08

Properties


Property Name	Value
Taxonomic scope	Eukaryota
Stop	0
Start	0
Seed ortholog score	207.2
Seed ortholog evalue	6.8e-51
Seed eggNOG ortholog	2880.D7FQ92
Preferred name	TRPC4AP
Model size	582
KEGG ko	ko:K11796
Hectar predicted targeting category	signal peptide
GOs	GO:0000151,GO:0001942,GO:0003674,GO:0005215,GO:0005216,GO:0005261,GO:0005262,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0007275,GO:0008150,GO:0008152,GO:0008324,GO:0008544,GO:0009056,GO:0009057,GO:0009888,GO:0009987,GO:0015075,GO:0015085,GO:0015267,GO:0015318,GO:0016020,GO:0016567,GO:0019538,GO:0019899,GO:0019902,GO:0019941,GO:0021700,GO:0022404,GO:0022405,GO:0022803,GO:0022838,GO:0022857,GO:0022890,GO:0030001,GO:0030163,GO:0031461,GO:0031464,GO:0032446,GO:0032501,GO:0032502,GO:0032991,GO:0034220,GO:0036211,GO:0042303,GO:0042633,GO:0043170,GO:0043412,GO:0043588,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044464,GO:0046873,GO:0048513,GO:0048731,GO:0048820,GO:0048856,GO:0051179,GO:0051234,GO:0051603,GO:0055085,GO:0060429,GO:0070588,GO:0070647,GO:0070838,GO:0071695,GO:0071704,GO:0071944,GO:0072511,GO:0080008,GO:0098655,GO:0098660,GO:0098662,GO:0098773,GO:1901564,GO:1901565,GO:1901575,GO:1902494,GO:1990234
Exons	2
EggNOG free text desc.	hair follicle maturation
EggNOG OGs	2CMDE@1,2QQ1C@2759
Cds size	579
COG Functional cat.	S
Best tax level	Eukaryota
Best eggNOG OG	NA\|NA\|NA
BRITE	ko00000,ko01009,ko04121

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1681462661.2277248-CDS-Ecto-sp13_S_contig1242:15506..15993	1681462661.2277248-CDS-Ecto-sp13_S_contig1242:15506..15993	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1242 15507..15993 +
1681462661.2424154-CDS-Ecto-sp13_S_contig1242:16787..16879	1681462661.2424154-CDS-Ecto-sp13_S_contig1242:16787..16879	Ectocarpus species13 EcNAP12_S_4_19m	CDS	Ecto-sp13_S_contig1242 16788..16879 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_Ecto-sp13_S_contig1242.2008.1	prot_Ecto-sp13_S_contig1242.2008.1	Ectocarpus species13 EcNAP12_S_4_19m	polypeptide	Ecto-sp13_S_contig1242 15507..16879 +

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at Ecto-sp13_S_contig1242:15507..16880+
coding sequence from alignment at Ecto-sp13_S_contig1242:15507..16880+

protein sequence of mRNA_Ecto-sp13_S_contig1242.2008.1

>prot_Ecto-sp13_S_contig1242.2008.1 ID=prot_Ecto-sp13_S_contig1242.2008.1|Name=mRNA_Ecto-sp13_S_contig1242.2008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=193bp
AFCVSLSQTAPVCASLWSACCLARDCPWVEIDSQTRGDIEGAEVWQHADQ
LVKAKKRKEKRGLRRDTRDRQQAAEAPREMARRNATGAQPLGRRKRKIGS
DAACGGVVGGVLRRQATGGRGRRRSTGQSFVLSATGNFHRRLRKDLEGVP
ELIADVRKSLTSGDNAALFTAIIEVRSKLIEGNSAPFDLPIRS

mRNA from alignment at Ecto-sp13_S_contig1242:15507..16880+

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_Ecto-sp13_S_contig1242.2008.1 ID=mRNA_Ecto-sp13_S_contig1242.2008.1|Name=mRNA_Ecto-sp13_S_contig1242.2008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1374bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1242:15507..16880+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTCTGTGTCTCGCTCTCTCAGACGGCACCTGTCTGCGCCTCTCTCTG
GTCTGCGTGTTGTCTTGCGCGAGATTGTCCTTGGGTAGAAATCGACAGTC
AAACAAGAGGAGATATCGAAGGCGCAGAGGTGTGGCAGCACGCGGACCAA
CTCGTGAAGGCCAAGAAGAGAAAGGAAAAAAGAGGCTTGAGACGAGACAC
GCGAGACAGACAACAAGCAGCGGAGGCTCCTAGGGAGATGGCTCGTAGAA
ACGCCACGGGCGCGCAACCTCTAGGCAGACGGAAGCGGAAGATAGGATCA
GATGCAGCCTGCGGCGGGGTCGTGGGGGGGGTGTTGAGGAGGCAAGCCAC
CGGAGGGAGGGGCAGGAGGCGGAGCACCGGGCAGAGCTTCGTGTTGTCAG
CCACCGGGAATTTTCATCGGCGTCTTCGGAAGGATTTGGAAGGGGTGCCA
GAGTTGATAGCCGACGTCAGGAAGAGCCTCACATCAGGTGAGCGACGTGT
TAGTCATGCTGTAGGCCGTGCAAGGTACTTGTACTTTTTTCTCTTTTCGT
TCGTCGTGCGGTACATCTGTAGCACCAAAAACCTGCTGACGACCCGCCCC
CCCCCCAAAGACTGAAAAATGAAATCCAGATCGCGGAGATGCCCGAGTCA
TTTCACGCCCATGCTGAGGAATGCCGATGCGTCGTCGAGGTTGAGAGGCG
GAGTCTGCGTATGGGATTGATACAGCTTGGTACCGACATCTTTGCTTTTT
CGCGGCTTGAGCGAACCGCGTCCGTTTTTTTTTTTTCTGGGGGGGGCATC
GGGAGTGGTCTTATTCTACAGAAGTAAACATACAGCAGTCTCTTCGGCTA
CACGCTGCTGCTGTGCGGGCGTGTATCATGATGAGGAAAAAACACGTACG
TGACATCGGCCGAGCGGAAGATTTTCCGCGTTTACGCTATACTTCCTCGC
AGCGCGGGATGTTGGCCCTTTTTTTTTTTGTTTGCCGATGGCGAAGATTG
TCAGGTGTTCCATCGCCTGTATCATCGAACCTTCACACATTCTACTTCGA
ACACATTCTGAGCGGAGTGTTTCTTGCCGCGCGCTCGCCCCAACCGCTCT
GCTGTCCAGCCGCTCGTGGCCGGAGGGAAAGAAACAGACACTGTCTACAG
GCCGTGCCCTCACAGCGGTCTGCCGCGACGCCTGTCGTCTTCAACGATTT
TTTATTTTTTACCCGTAAAAACGTAATCGTGACACAATCGTGGTAACTTC
ATGTGTCGCATTTTTTTTCTCGTCTTCCCAGGCGACAACGCAGCCTTGTT
TACAGCCATTATCGAGGTGCGCAGCAAGCTTATCGAAGGCAACAGCGCCC
CGTTTGATTTGCCCATACGGTCGA

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1242:15507..16880+

>mRNA_Ecto-sp13_S_contig1242.2008.1 ID=mRNA_Ecto-sp13_S_contig1242.2008.1|Name=mRNA_Ecto-sp13_S_contig1242.2008.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=579bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1242:15507..16880+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCTTTCTGTGTCTCGCTCTCTCAGACGGCACCTGTCTGCGCCTCTCTCTG
GTCTGCGTGTTGTCTTGCGCGAGATTGTCCTTGGGTAGAAATCGACAGTC
AAACAAGAGGAGATATCGAAGGCGCAGAGGTGTGGCAGCACGCGGACCAA
CTCGTGAAGGCCAAGAAGAGAAAGGAAAAAAGAGGCTTGAGACGAGACAC
GCGAGACAGACAACAAGCAGCGGAGGCTCCTAGGGAGATGGCTCGTAGAA
ACGCCACGGGCGCGCAACCTCTAGGCAGACGGAAGCGGAAGATAGGATCA
GATGCAGCCTGCGGCGGGGTCGTGGGGGGGGTGTTGAGGAGGCAAGCCAC
CGGAGGGAGGGGCAGGAGGCGGAGCACCGGGCAGAGCTTCGTGTTGTCAG
CCACCGGGAATTTTCATCGGCGTCTTCGGAAGGATTTGGAAGGGGTGCCA
GAGTTGATAGCCGACGTCAGGAAGAGCCTCACATCAGGCGACAACGCAGC
CTTGTTTACAGCCATTATCGAGGTGCGCAGCAAGCTTATCGAAGGCAACA
GCGCCCCGTTTGATTTGCCCATACGGTCG