mRNA_Ecto-sp13_S_contig1242.2007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1242.2007.1 vs. uniprot
Match: A0A6H5L2A2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2A2_9PHAE) HSP 1 Score: 1356 bits (3509), Expect = 0.000e+0 Identity = 1005/1214 (82.78%), Postives = 1028/1214 (84.68%), Query Frame = 1
Query: 100 MARYRTDLGSLFPVVGSKQHAFVVPASAISSKRRRVRQRTPSCSVEQQLPVAAGRVLSRDGNRHQQRMSTTTNYSNGATEAKRRVNGRLVVASRGGVGRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVTXXXXXXXXXXXXXXXXXXXXXXXXXLIGIKNRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGQHKRALELLEEMLESRVVPDAAVFTAAMTAVDGWGAAXXXXXXXXXXXXXXXXXXXXXXXSVVARSGREDVAXXXXXXXXXXXXXXXXXXXXXXXXXCASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXXGPTGSWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQXXXXXXXXXXXXXXXXXXXXXXXRLLSDGLQRRHRPAAVDEGNGGHGVVLGQGELEGETEALLERRQCAATAGGEKRHREESGVRARTRIRSSSEAGGECQGVVGEYSGVNEEAEDETRRTGRDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGVLLNPSMYRCALKACGNLGDYQQANDILLRMAKESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSFRRTNALNSEGQLDGSGDKQEPKVPQTCRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDEEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANTLLWVMLDAASPPASVQTSSTASSLRNCASGDHVAGGQRRHSPPPSPPQPRLEVRPWHLASAIAAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTTAARQLVEEARGLRLELARGYEG 3741
MA YRTDLGSLFPVVGSKQHAFVVPASAISSKRRRVRQRTPS V+QQ PVAAGR+LSRDG+RHQQR+STTT + N TEAKRRVNGRLV XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEV XXXXXXXXXXXXXXXXXXXXXXXXXL+GIK RGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MTAVDGWGAA SVVARSGREDVA XXXXXXXXXXXX CASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXX GPTG+WEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFD+ARYVHRIRPSLQIYGALLGALAEGERWADVLVY+DRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQ RLL DGLQRR RPAAVDEG+GG GVVLGQGELEGETEALL RRQ AATA GEKRH EES VRARTRIR EA E QGV+GE + V+EE+ED TRRTG DSDSVDDGVGG WEGVTPGLL SVLRALDEQDEDSAVLEAVKRGREKGVLLNPS+YRCALKACGNLGDY QANDIL+RMA+ESLTPDIVHWNHALRASAACARWQETRLRL+EMET GSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSS RR NALN EGQLDGSGDK+EPKVPQ CRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLD+EKGPPSADLRLAEA LLLFDRLVAAGETPTADAYAHALKACARTANPQRAN L W MLDAASPPA+VQTSS SSLRN ASG++VA GQRRHS PPSPPQPR EVRPWHLASAIAAYDAAGDW GAKQLWDEALRRGVSPRSPGYDAAVS ALRAGDT AARQLVEEARGLRLELARGYEG
Sbjct: 1 MASYRTDLGSLFPVVGSKQHAFVVPASAISSKRRRVRQRTPSRQVQQQTPVAAGRMLSRDGDRHQQRLSTTTKHDNSVTEAKRRVNGRLVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVRXXXXXXXXXXXXXXXXXXXXXXXXXLMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------------------------------------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXMTAVDGWGAALRLLEGVLPDVNTYNAAL-----SVVARSGREDVALALLNRMRIDGXXXXXXXXXXXXDACASREKWQEAVELLEVDMPAAKVKXXXXXXXXXXXXXAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDEARYVHRIRPSLQIYGALLGALAEGERWADVLVYMDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQREMVRDAGGEEGGGSDNRLLWDGLQRRRRPAAVDEGDGGRGVVLGQGELEGETEALLGRRQRAATAAGEKRHGEESEVRARTRIRPCPEAARERQGVLGEQNCVDEESEDGTRRTGGDSDSVDDGVGG-WEGVTPGLLISVLRALDEQDEDSAVLEAVKRGREKGVLLNPSIYRCALKACGNLGDYDQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLKEMETSGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSCRRKNALNGEGQLDGSGDKKEPKVPQACRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEAALLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWFMLDAASPPAAVQTSSNLSSLRNGASGNYVADGQRRHSRPPSPPQPRPEVRPWHLASAIAAYDAAGDWTGAKQLWDEALRRGVSPRSPGYDAAVSVALRAGDTAAARQLVEEARGLRLELARGYEG 1172
BLAST of mRNA_Ecto-sp13_S_contig1242.2007.1 vs. uniprot
Match: D7FQ90_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ90_ECTSI) HSP 1 Score: 1169 bits (3025), Expect = 0.000e+0 Identity = 673/757 (88.90%), Postives = 688/757 (90.89%), Query Frame = 1
Query: 1474 MPAAKVKXXXXXXXXXXXXXXGPTGSWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQXXXXXXXXXXXXXXXXXXXXXXXRLLSDGLQRRHRPAAVDEGNGGHGVVLGQGELEGETEALLERRQCAATAGGEKRHREESGVRARTRIRSSSEAGGECQGVVGEYSGVNEEAEDETRRTGRDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGVLLNPSMYRCALKACGNLGDYQQANDILLRMAKESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDKSSFRRTNALNSEGQLDGSGDKQEPKVPQTCRGKNAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDEEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANTLLWVMLDAASPPASVQTSSTASSLRNCASGDHVAGGQRRHSPPPSPPQPRLEVRPWHLASAIAAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTTAARQLVEEARGLRLELARGYEGG 3744
MPAAKVK GPTG+WEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQ R L DGLQRR RPA VDEG+G GVVLGQGELEGE EALLERRQ AATAGGEKRH EES VRARTRIRSSSEA GE QGVV + +GV+EEA+D TRRT RDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKG+LLN S+YRCALKACGNLGDYQQANDIL+RMA+ESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEED SS RR NAL+SEGQLD SGDKQEPKVPQ CRGK+AIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLD+EKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRAN L WVMLD ASPPA+V+TSSTASSL N ASGDHVA GQRRHSPPPSPPQPR EVRPWHLAS I AYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDT AARQLVEEARGLRLELARGYEGG
Sbjct: 1 MPAAKVKPDVISFTSAIHACAGPTGNWEKAYQLLDAMWQDPEGAKPSKHTYDLVIQACGHGGEWELGVTLIDDMRDLGIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEWKRATEIFDQARYVHRIRPSLQIYGALLGALAEGERWADVLVYLDRMVADGVARDAAATNTAVLAAAELGDGRRALSLLEGGEGSQQRGGRQRGVARDVVGEEGGGSDNRQLCDGLQRRRRPAGVDEGDGIRGVVLGQGELEGEPEALLERRQRAATAGGEKRHGEESEVRARTRIRSSSEAAGERQGVVADENGVDEEAQDGTRRTERDSDSVDDGVGGGWEGVTPGLLNSVLRALDEQDEDSAVLEAVKRGREKGILLNQSIYRCALKACGNLGDYQQANDILVRMAEESLTPDIVHWNHALRASAACARWQETRLRLQEMETFGSTPDEFSYSMALKACSAGLWSGDSWCDSRGWGAEEDTSSSRRRNALSSEGQLDSSGDKQEPKVPQACRGKSAIELLQEMKQRGVRLSAHAYTLAMAACLEGHRDRHPELEAGLDKEKGPPSADLRLAEATLLLFDRLVAAGETPTADAYAHALKACARTANPQRANALFWVMLDDASPPAAVRTSSTASSLCNGASGDHVASGQRRHSPPPSPPQPRPEVRPWHLASTIVAYDAAGDWAGAKQLWDEALRRGVSPRSPGYDAAVSAALRAGDTAAARQLVEEARGLRLELARGYEGG 757
BLAST of mRNA_Ecto-sp13_S_contig1242.2007.1 vs. uniprot
Match: D7FQ89_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ89_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 2.120e-12 Identity = 243/285 (85.26%), Postives = 245/285 (85.96%), Query Frame = 1
Query: 493 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSEMEREDSEVTXXXXXXXXXXXXXXXXXXXXXXXXXLIGIKNRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXARGEGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVGGQHKRALELLEEMLESRVVPDAAVFTAAMTAVDGWGAAXXXXXXXXXXXXXXXXXXXXXXXSVVARSGREDVA 1347
RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX MERE S+V XXXXXXXXXXXXXXXXXXXXXXXXX +GIK RGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VVPDAAVFTAAMTAVDGWGA XXXXXXX XXXXXXXXX SVVARSGREDVA
Sbjct: 9 RWTEVLEILGHWEENAGRLDAKTYNVALSALGKCGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMEREGSDVXXXXXXXXXXXXXXXXXXXXXXXXXXXMGIKTRGLSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVVPDAAVFTAAMTAVDGWGATLRXXXXXXXEGVXXXXXXXXXALSVVARSGREDVA 292 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1242.2007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1242.2007.1 >prot_Ecto-sp13_S_contig1242.2007.1 ID=prot_Ecto-sp13_S_contig1242.2007.1|Name=mRNA_Ecto-sp13_S_contig1242.2007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1221bp MARYRTDLGSLFPVVGSKQHAFVVPASAISSKRRRVRQRTPSCSVEQQLPback to top mRNA from alignment at Ecto-sp13_S_contig1242:897..12954+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1242.2007.1 ID=mRNA_Ecto-sp13_S_contig1242.2007.1|Name=mRNA_Ecto-sp13_S_contig1242.2007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=12058bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1242:897..12954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1242:897..12954+ >mRNA_Ecto-sp13_S_contig1242.2007.1 ID=mRNA_Ecto-sp13_S_contig1242.2007.1|Name=mRNA_Ecto-sp13_S_contig1242.2007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1242:897..12954+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |