mRNA_Ecto-sp13_S_contig1241.2002.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1241.2002.1
Unique NamemRNA_Ecto-sp13_S_contig1241.2002.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1241.2002.1 vs. uniprot
Match: D8LEL2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL2_ECTSI)

HSP 1 Score: 364 bits (935), Expect = 7.580e-122
Identity = 198/234 (84.62%), Postives = 204/234 (87.18%), Query Frame = 1 
Query:  742 VRGYYVGPLLDSSFDLLMLREPVADPTDQSLYVNRTRDKIEKRRALREQQHRDGCAGGVESGGVGGAVXXXDCGSXXSNSRGGGHGQRGVVENVVAATGNSAGEKTSAAPSAALEKCTPVEPLRAGDLVSPITINLEREHVMAERRRLYQIDSDFAARKIARVAGYGRSNYTRSKLLTHKAKNAAFTKELLKQPPGVGGVAAKCPRGLRSHFLGLQNFEYDWGGGGRRGGGVTG 1443
            +RGYYVGPLLDSSFDLLMLREPV DPTDQS+YVNRTRDKIE+RRALREQQHR GCAGG  SGG     XXX    XX       HGQRG VENV AA GNSAGEKTSAAPSAA EK TPVEPLRAGDLVSPIT NLEREHVMAERRRLYQIDSDFAARK ARVAG GRSNY+RSK+LTHK KNAAFTKELLKQ PGVGGVAAKCPRGL+SHFLGLQNFEYDWGGGGRRGGGVTG
Sbjct:    1 MRGYYVGPLLDSSFDLLMLREPVVDPTDQSVYVNRTRDKIEQRRALREQQHRGGCAGGAGSGGXXXXXXXXXXXXXXXXXXXXXHGQRGAVENVAAAAGNSAGEKTSAAPSAAPEKWTPVEPLRAGDLVSPITTNLEREHVMAERRRLYQIDSDFAARKNARVAGCGRSNYSRSKMLTHKTKNAAFTKELLKQAPGVGGVAAKCPRGLKSHFLGLQNFEYDWGGGGRRGGGVTG 234
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1241.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEL2_ECTSI7.580e-12284.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1241contigEcto-sp13_S_contig1241:11955..15076 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1449
Hectar predicted targeting categoryother localisation
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_002590.1
Cds size1449
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.7312174-CDS-Ecto-sp13_S_contig1241:11954..130801681462660.7312174-CDS-Ecto-sp13_S_contig1241:11954..13080Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1241 11955..13080 +
1681462660.740003-CDS-Ecto-sp13_S_contig1241:13429..135021681462660.740003-CDS-Ecto-sp13_S_contig1241:13429..13502Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1241 13430..13502 +
1681462660.7544777-CDS-Ecto-sp13_S_contig1241:14401..144681681462660.7544777-CDS-Ecto-sp13_S_contig1241:14401..14468Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1241 14402..14468 +
1681462660.770548-CDS-Ecto-sp13_S_contig1241:14893..150761681462660.770548-CDS-Ecto-sp13_S_contig1241:14893..15076Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1241 14894..15076 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1241.2002.1prot_Ecto-sp13_S_contig1241.2002.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1241 11955..15076 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1241.2002.1

>prot_Ecto-sp13_S_contig1241.2002.1 ID=prot_Ecto-sp13_S_contig1241.2002.1|Name=mRNA_Ecto-sp13_S_contig1241.2002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=483bp
MPPSDVSGESSTTTEAPGEGFLGLDLAFNCIGRAGTTALHRALSSDATSV
LFLELRGNETKGSTERRATTSLEPRNHRSDHNGGGGGGGGGVNNNSNGVH
TNSRGVTKSNKYDDDDDVSNSIPVETPPLEVLLEEIGHVCAERRRARRLR
GEHLRPHHRRCSAAADRQELGAPTSLPPRRTAVAAQRQRSTPQSAVLHPG
RDQRPAPGTSTAAFGVGGDTGDIGSTPRLPGHGNSVAKPRPLEGALPVRG
YYVGPLLDSSFDLLMLREPVADPTDQSLYVNRTRDKIEKRRALREQQHRD
GCAGGVESGGVGGAVGGGDCGSGGSNSRGGGHGQRGVVENVVAATGNSAG
EKTSAAPSAALEKCTPVEPLRAGDLVSPITINLEREHVMAERRRLYQIDS
DFAARKIARVAGYGRSNYTRSKLLTHKAKNAAFTKELLKQPPGVGGVAAK
CPRGLRSHFLGLQNFEYDWGGGGRRGGGVTGM*
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mRNA from alignment at Ecto-sp13_S_contig1241:11955..15076+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1241.2002.1 ID=mRNA_Ecto-sp13_S_contig1241.2002.1|Name=mRNA_Ecto-sp13_S_contig1241.2002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3122bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1241:11955..15076+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGTCCGACGTGTCGGGCGAAAGTTCGACGACGACGGAAGCACC
AGGGGAGGGCTTCTTGGGCCTCGATCTGGCGTTTAACTGCATCGGCCGCG
CGGGGACGACCGCTCTCCACCGCGCTCTCTCTTCCGACGCCACGAGCGTC
TTGTTCTTGGAGCTTCGGGGGAACGAAACCAAAGGAAGCACCGAACGCCG
TGCCACCACCAGCCTCGAACCCCGCAACCACCGCAGCGACCACAACGGCG
GCGGCGGCGGCGGCGGCGGCGGCGTCAACAACAACAGCAACGGCGTCCAC
ACCAACAGCCGGGGTGTCACAAAAAGCAACAAATACGACGACGACGACGA
CGTCAGCAACAGCATCCCCGTGGAAACCCCGCCTCTCGAGGTGCTCCTGG
AAGAAATCGGCCACGTCTGCGCCGAGCGGAGGCGAGCCCGACGGCTGCGA
GGCGAGCATCTCCGACCGCACCACCGCCGCTGCTCCGCGGCAGCAGACCG
ACAAGAATTGGGCGCACCAACGTCTTTGCCGCCAAGGCGCACAGCGGTAG
CAGCTCAACGACAACGATCCACGCCTCAGAGCGCGGTCCTCCATCCCGGC
CGGGACCAACGGCCAGCCCCCGGAACGTCCACAGCGGCGTTTGGAGTCGG
CGGTGACACAGGCGACATCGGCAGTACTCCGCGCCTCCCCGGCCATGGCA
ACAGCGTTGCCAAGCCGAGGCCGCTAGAGGGGGCGCTTCCCGTGCGCGGC
TACTACGTCGGCCCGCTTCTGGACAGCTCCTTTGACCTTCTCATGCTCAG
GGAGCCGGTGGCGGACCCTACCGACCAGTCCCTCTACGTCAACCGGACCA
GGGACAAGATCGAAAAGAGAAGAGCGCTCCGAGAACAGCAGCATCGGGAC
GGCTGTGCTGGTGGTGTTGAGAGCGGTGGCGTTGGAGGTGCCGTTGGAGG
AGGAGACTGCGGCAGTGGCGGGAGCAATAGCAGAGGCGGTGGACATGGCC
AGCGGGGCGTTGTGGAGAATGTGGTCGCCGCTACTGGAAACAGTGCCGGG
GAGAAGACCTCAGCGGCGCCCTCAGCGGCGCTGGAGAAGTGTACGCCCGT
TGAACCGTTGAGGGCAGGAGACCTAGGTAAGAGTGAAGTTAGAGAAGACC
ATCGCCAGGCGCTCTACTCCGTTAGTCACCTGCCTGTGAGGTCCACGCAT
CGACATACACACTTGCAGAGCCAAGCGAGTCACTTGTTCTGACGAATACA
TCCGCCCCACCTACTACCGTAGGGGGTTTGCCTTGGTTTGTGGGGACAAC
GATCCAAGCATATCCAGTGTTCTCTATTCATTCTGCGCTCCTTTCGTGGA
ATGGATGATTATGTCGATGCACACCTGGAAGTCGGTGGCATACGGATATT
CACAACAAATCAACCCTTATCATTCGCCTAAAGCGAGTAAAAAATCTCCA
TTTCCCGCTGTTCCCTTGTTATCAGTGTCCCCTATAACCATCAACCTGGA
ACGGGAACACGTGATGGCGGAGAGGCGCCGCCTCTATCAGATAGACAGGT
GAAGACGAAAAGGAAACAGGAGCAGTTGATGAAACAACCGCGTCAACCAT
ACAGAAAGCTGATGTGTTTACCCCGGACACTTTTTTTCTCAGCTGCGAAG
ACCGAATCGAGCGTTCCGTCCACCCTAAGAGCAGCGGTAACAGATGACAA
AAACACATGGCATGGAAACCGTACGTTCACACGCGTAGCAATGTGTCGCA
GCCTATTTTCCAGCTGTCTTTGCTCTTGCTATACCTTTTTTGTCGGTGTC
ATATGTTTTCCCCAGACGTTTGCCCTTAACACACCGTAATTGACGTTATT
GCCGTGATTTTATATCTTAAAGACAACTGGGTGGTATATATCGTCCGATG
ACTGTTACTCTTTCTGGTCGTTGCCTCAACATCGGTGCGAAATAATGTTG
AGAGGGGGCTTGTACGAGCCTGCCACCGAGGAGGTCGATAGGTCCCGGGG
GCAGCAATTCTCCTGTGCGTAAGACTTCACCAAGATAGTGCGAACGTCGA
GCGCGTACGCACAAGGGTAGATTGCAGCGGTCGATGTAGATCCTTCGATT
GCCGTTTTTTTTCAAAGACGCAAGTTTTACCGCCTCGAGCTCGACACGAG
AACAGGCGAACTATGTGCAAATGTAGGACGTAGTGCAAAACATGAATTGA
CATGGAGTGCCATATCCTTGGACATGGCAGGACGGCATGCGAGCACGTTG
CAGATATCTCGAGTGTGTCTAGGGGCTACCTTAGGGCGGGCGTACAACAG
GCTATGTCCCCCCGCGCTCAAACTCAAAAGTCAAAAAAAGGGAAAAGCCA
CCGGTAAAGATGCCTCGCAGATACTACTCGGAAATATTTTCCCATTTCCG
GATGGATGTGGATAAGTGTGGTTGTTTGCTCCCTGATTCGTTTTCAGTGA
CTTTGCCGCCAGGAAGATCGCGAGGGTAGCCGGCTATGGGCGGTCCAACT
ATACTCGCAGCAAGGTGAGGCAGCATCTGCGGTTGTCGTGGTCGTCATCG
TTGCTGTCGCTGTTACTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGCTGCTGCTGCGGTTGTTGCTGCCATCGTCATTGCCGCCGTTGTTGT
TAGTGTTTAAGTATGATCGCCTTCTCTTCTCACCATCTTCGCGCCACTGC
GAGAATGCGAGGACGGCGGTGCAAACGTGCTTCTCCCAACAACGGAACCA
TTGGACCGTACCCAGGTTCGAGAACCGCAGTATGCGCACTATATGGCGCC
GTACACGGTCGACCATACGCTGCAGTATGTCACCCTCGCCCTCACCCACA
CCCAACCCTACAGAAGATTCCCATGCTCCCACCAATCCACTGTTCCCGTG
AAATGCCGTCCGCAACCGTCATTCATGCTACGAGAAAAGCTGTTGACGCA
CAAGGCCAAGAACGCAGCTTTCACGAAGGAACTCCTGAAACAACCTCCGG
GTGTCGGCGGAGTAGCAGCGAAGTGCCCTCGAGGTCTAAGGTCTCACTTC
CTGGGGTTACAGAACTTCGAGTACGACTGGGGGGGCGGGGGTCGACGAGG
GGGCGGGGTGACTGGAATGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1241:11955..15076+

>mRNA_Ecto-sp13_S_contig1241.2002.1 ID=mRNA_Ecto-sp13_S_contig1241.2002.1|Name=mRNA_Ecto-sp13_S_contig1241.2002.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1449bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1241:11955..15076+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCCCGTCCGACGTGTCGGGCGAAAGTTCGACGACGACGGAAGCACC
AGGGGAGGGCTTCTTGGGCCTCGATCTGGCGTTTAACTGCATCGGCCGCG
CGGGGACGACCGCTCTCCACCGCGCTCTCTCTTCCGACGCCACGAGCGTC
TTGTTCTTGGAGCTTCGGGGGAACGAAACCAAAGGAAGCACCGAACGCCG
TGCCACCACCAGCCTCGAACCCCGCAACCACCGCAGCGACCACAACGGCG
GCGGCGGCGGCGGCGGCGGCGGCGTCAACAACAACAGCAACGGCGTCCAC
ACCAACAGCCGGGGTGTCACAAAAAGCAACAAATACGACGACGACGACGA
CGTCAGCAACAGCATCCCCGTGGAAACCCCGCCTCTCGAGGTGCTCCTGG
AAGAAATCGGCCACGTCTGCGCCGAGCGGAGGCGAGCCCGACGGCTGCGA
GGCGAGCATCTCCGACCGCACCACCGCCGCTGCTCCGCGGCAGCAGACCG
ACAAGAATTGGGCGCACCAACGTCTTTGCCGCCAAGGCGCACAGCGGTAG
CAGCTCAACGACAACGATCCACGCCTCAGAGCGCGGTCCTCCATCCCGGC
CGGGACCAACGGCCAGCCCCCGGAACGTCCACAGCGGCGTTTGGAGTCGG
CGGTGACACAGGCGACATCGGCAGTACTCCGCGCCTCCCCGGCCATGGCA
ACAGCGTTGCCAAGCCGAGGCCGCTAGAGGGGGCGCTTCCCGTGCGCGGC
TACTACGTCGGCCCGCTTCTGGACAGCTCCTTTGACCTTCTCATGCTCAG
GGAGCCGGTGGCGGACCCTACCGACCAGTCCCTCTACGTCAACCGGACCA
GGGACAAGATCGAAAAGAGAAGAGCGCTCCGAGAACAGCAGCATCGGGAC
GGCTGTGCTGGTGGTGTTGAGAGCGGTGGCGTTGGAGGTGCCGTTGGAGG
AGGAGACTGCGGCAGTGGCGGGAGCAATAGCAGAGGCGGTGGACATGGCC
AGCGGGGCGTTGTGGAGAATGTGGTCGCCGCTACTGGAAACAGTGCCGGG
GAGAAGACCTCAGCGGCGCCCTCAGCGGCGCTGGAGAAGTGTACGCCCGT
TGAACCGTTGAGGGCAGGAGACCTAGTGTCCCCTATAACCATCAACCTGG
AACGGGAACACGTGATGGCGGAGAGGCGCCGCCTCTATCAGATAGACAGT
GACTTTGCCGCCAGGAAGATCGCGAGGGTAGCCGGCTATGGGCGGTCCAA
CTATACTCGCAGCAAGCTGTTGACGCACAAGGCCAAGAACGCAGCTTTCA
CGAAGGAACTCCTGAAACAACCTCCGGGTGTCGGCGGAGTAGCAGCGAAG
TGCCCTCGAGGTCTAAGGTCTCACTTCCTGGGGTTACAGAACTTCGAGTA
CGACTGGGGGGGCGGGGGTCGACGAGGGGGCGGGGTGACTGGAATGTGA
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