mRNA_Ecto-sp13_S_contig12406.1998.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12406.1998.1
Unique NamemRNA_Ecto-sp13_S_contig12406.1998.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: D7FVP2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FVP2_ECTSI)

HSP 1 Score: 244 bits (623), Expect = 1.220e-75
Identity = 162/294 (55.10%), Postives = 169/294 (57.48%), Query Frame = 1 
Query:   70 MIRLRLVVVALTLTTTAHTCSGFIPAAASA--VSRTPRPVFRSPGADSNGRHVGAYSPPTDQTRPPRTLKNGAADSSDDIDLSSAMANARANLAAGISTXXXXXXXXXXLLLVLRSSDVVLKQAQLQMPVLWGRHVINILQNRVGLHKIPHPRNRCKSWSTYMYSMTKRMHTEKMYFREASDETASTPPFSAQPLFLLWRNRALKIGPEGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDGTL 945
            MIR RLV VAL+L TTAHTCSGFIPAAA+A  VSR PRPVFRSPGA+SNGRHVGA SPPTD+ RPPRTLKNGAADSSDDIDLSSAMANARANLAAG                                                                                                                  TSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEE+QELAQSGMMDQ STSKKSKGLF DMKDV GALSGGAHIVKR+DGT+
Sbjct:    1 MIRRRLVAVALSLMTTAHTCSGFIPAAAAAAAVSRIPRPVFRSPGANSNGRHVGACSPPTDRNRPPRTLKNGAADSSDDIDLSSAMANARANLAAG------------------------------------------------------------------------------------------------------------------TSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEVQELAQSGMMDQDSTSKKSKGLFSDMKDVLGALSGGAHIVKRDDGTV 180
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: A0A835ZCH3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZCH3_9STRA)

HSP 1 Score: 100 bits (248), Expect = 8.640e-22
Identity = 50/86 (58.14%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:  688 EGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDGTL 945
            EG SPGAGL +A +QADAA+ADLI+TSVD + ++L DE++ EL ++GMMD  STS++S+G  GD+ DVF AL GGAHI +++DG +
Sbjct:   24 EGKSPGAGLATAEEQADAAYADLILTSVDQKHLSLGDEDLAELTKAGMMDSKSTSRRSRGWAGDIADVFNALKGGAHIQRQKDGRI 109
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: C1DZJ8_MICCC (Uncharacterized protein n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1DZJ8_MICCC)

HSP 1 Score: 93.2 bits (230), Expect = 6.990e-19
Identity = 49/83 (59.04%), Postives = 63/83 (75.90%), Query Frame = 1 
Query:  691 GTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDG 939
            G SPGAGL  A  QA+AAFAD+I T+VD  G  LD EE+ +L++ G MD+ S SKKS G+ GD++D+FGALS GAHIVK++ G
Sbjct:   60 GLSPGAGLADADAQAEAAFADMINTTVDVTGEALDSEELSQLSRGGKMDEESKSKKSGGILGDVRDLFGALSKGAHIVKQKGG 142
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: C1MJA6_MICPC (Predicted protein n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1MJA6_MICPC)

HSP 1 Score: 89.7 bits (221), Expect = 2.160e-17
Identity = 47/83 (56.63%), Postives = 62/83 (74.70%), Query Frame = 1 
Query:  691 GTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDG 939
            G SPGAGL SA DQA+AAFAD+I T+VD  G  LD +    LA+ G MD  STS+KS G++ D++D+FGAL  GAHIV++++G
Sbjct:   83 GMSPGAGLSSAEDQAEAAFADMINTTVDVTGEALDADARARLAEGGRMDGASTSRKSGGMWSDVRDLFGALGKGAHIVRQKNG 165
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: A0A7R9XNM3_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7R9XNM3_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 3.330e-12
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:  664 NRALKIGPEGTSPGAGLESAFDQADAAFADLIVTSVD--DQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDG 939
            + A K   EG SPGAGL +A +QA+AAFADLI TS+D  D+   L   E+ EL++ G MD+ S ++KS GL  D+  +F AL  GAHIVK++DG
Sbjct:  124 SNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDG 216
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: A0A830HV35_9CHLO (Uncharacterized protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HV35_9CHLO)

HSP 1 Score: 76.3 bits (186), Expect = 5.590e-12
Identity = 48/94 (51.06%), Postives = 64/94 (68.09%), Query Frame = 1 
Query:  664 NRALKIGPEGTSPGAGLESAFDQADAAFADLIVTSVD--DQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDG 939
            + A K   EG SPGAGL +A +QA+AAFADLI TS+D  D+   L   E+ EL++ G MD+ S ++KS GL  D+  +F AL  GAHIVK++DG
Sbjct:   72 SNARKNSLEGLSPGAGLMTAQEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEALGKGAHIVKQKDG 164
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: D6PJB7_9ZZZZ (Uncharacterized protein n=1 Tax=uncultured organism MedDCM-OCT-S08-C998 TaxID=743643 RepID=D6PJB7_9ZZZZ)

HSP 1 Score: 69.3 bits (168), Expect = 6.670e-11
Identity = 41/88 (46.59%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:  697 SPGAGLESAFDQADAAFADLIVTSVDDQ--GVTLDDEEMQELAQSGMM-----DQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDG 939
            SPGAG+E AF+ A+AA+ADLI+TS+D +  G  L DE++  L++ G M      ++   KK+ G  GD+ +   AL+GGAHIVK E+G
Sbjct:   17 SPGAGVEDAFEAAEAAYADLILTSIDQRELGEELGDEDLAALSKGGTMWEDGAKEIRNDKKA-GFMGDLFNALSALAGGAHIVKDENG 103
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BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Match: A0A7S2FA39_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A7S2FA39_9CHLO)

HSP 1 Score: 59.7 bits (143), Expect = 1.280e-6
Identity = 40/82 (48.78%), Postives = 54/82 (65.85%), Query Frame = 1 
Query:  664 NRALKIGPEGTSPGAGLESAFDQADAAFADLIVTSVD--DQGVTLDDEEMQELAQSGMMDQVSTSKKSKGLFGDMKDVFGAL 903
            + A K   EG SPGAGL +A +QA+AAFADLI TS+D  D+   L   E+ EL++ G MD+ S ++KS GL  D+  +F AL
Sbjct:  127 SNARKNSLEGLSPGAGLMTAEEQAEAAFADLINTSLDGADRNA-LTGAEITELSEGGRMDEGSKARKSGGLLADVVGLFEAL 207
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12406.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FVP2_ECTSI1.220e-7555.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835ZCH3_9STRA8.640e-2258.14Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
C1DZJ8_MICCC6.990e-1959.04Uncharacterized protein n=1 Tax=Micromonas commoda... [more]
C1MJA6_MICPC2.160e-1756.63Predicted protein n=2 Tax=Micromonas pusilla TaxID... [more]
A0A7R9XNM3_9CHLO3.330e-1251.06Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
A0A830HV35_9CHLO5.590e-1251.06Uncharacterized protein n=1 Tax=Pycnococcus provas... [more]
D6PJB7_9ZZZZ6.670e-1146.59Uncharacterized protein n=1 Tax=uncultured organis... [more]
A0A7S2FA39_9CHLO1.280e-648.78Hypothetical protein (Fragment) n=1 Tax=Pycnococcu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12406contigEcto-sp13_S_contig12406:716..3393 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score252.7
Seed ortholog evalue2.1e-64
Seed eggNOG ortholog2880.D7FVP2
Model size1451
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG OGs2D476@1,2SU5J@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-01_006010.1
Cds size879
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12406.1998.1prot_Ecto-sp13_S_contig12406.1998.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12406 785..2890 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.4030125-UTR-Ecto-sp13_S_contig12406:715..7841681462660.4030125-UTR-Ecto-sp13_S_contig12406:715..784Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12406 716..784 +
1681462660.4551349-UTR-Ecto-sp13_S_contig12406:2890..33931681462660.4551349-UTR-Ecto-sp13_S_contig12406:2890..3393Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12406 2891..3393 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462660.4147139-CDS-Ecto-sp13_S_contig12406:784..14061681462660.4147139-CDS-Ecto-sp13_S_contig12406:784..1406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12406 785..1406 +
1681462660.4276857-CDS-Ecto-sp13_S_contig12406:1600..16601681462660.4276857-CDS-Ecto-sp13_S_contig12406:1600..1660Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12406 1601..1660 +
1681462660.4381769-CDS-Ecto-sp13_S_contig12406:1942..19921681462660.4381769-CDS-Ecto-sp13_S_contig12406:1942..1992Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12406 1943..1992 +
1681462660.4465554-CDS-Ecto-sp13_S_contig12406:2743..28901681462660.4465554-CDS-Ecto-sp13_S_contig12406:2743..2890Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12406 2744..2890 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12406.1998.1

>prot_Ecto-sp13_S_contig12406.1998.1 ID=prot_Ecto-sp13_S_contig12406.1998.1|Name=mRNA_Ecto-sp13_S_contig12406.1998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=293bp
MIRLRLVVVALTLTTTAHTCSGFIPAAASAVSRTPRPVFRSPGADSNGRH
VGAYSPPTDQTRPPRTLKNGAADSSDDIDLSSAMANARANLAAGISTHLH
AHSHSRSLLLVLRSSDVVLKQAQLQMPVLWGRHVINILQNRVGLHKIPHP
RNRCKSWSTYMYSMTKRMHTEKMYFREASDETASTPPFSAQPLFLLWRNR
ALKIGPEGTSPGAGLESAFDQADAAFADLIVTSVDDQGVTLDDEEMQELA
QSGMMDQVSTSKKSKGLFGDMKDVFGALSGGAHIVKREDGTL*
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mRNA from alignment at Ecto-sp13_S_contig12406:716..3393+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12406.1998.1 ID=mRNA_Ecto-sp13_S_contig12406.1998.1|Name=mRNA_Ecto-sp13_S_contig12406.1998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2678bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12406:716..3393+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTCCGAAAGCCGTAAATTAGCCCCAGGTTGTGCGCAGGACTTCTATTCCT
CCTGTTCACGGGACGAATCATGATTCGTCTTCGTCTTGTTGTCGTTGCGC
TGACTCTCACGACCACGGCACACACCTGCAGTGGCTTCATCCCTGCTGCT
GCTTCTGCTGTCTCAAGAACACCGAGGCCGGTATTTCGAAGTCCAGGGGC
AGACAGCAATGGTCGACATGTGGGTGCCTACTCTCCTCCTACTGATCAGA
CTCGACCGCCGCGAACACTGAAGAATGGAGCCGCCGACAGCAGCGATGAC
ATCGATCTCAGCTCCGCGATGGCGAACGCGCGTGCGAACCTCGCGGCAGG
TATATCTACACATCTACATGCTCACTCCCACAGCCGCTCGCTGTTGCTTG
TATTGCGCAGCAGTGATGTCGTTCTCAAACAGGCTCAGCTGCAGATGCCT
GTGCTTTGGGGTCGGCATGTCATCAATATCCTACAGAATAGGGTTGGGCT
GCACAAGATTCCACACCCTCGGAACCGATGTAAAAGCTGGTCTACGTACA
TGTACTCCATGACGAAGAGGATGCATACTGAGAAGATGTATTTTAGGGAA
GCCTCTGACGAGACGGCTTCAACGCCGCCGTTTTCGGCGCAGCCACTCTT
TCTGCTATGGAGAAATCGAGCTTTGAAAATTGGTCCAGAAGGTGTGATAT
CTTACTGCTGTCACCAACGGTAATGCAGTTACGTCTGTGAACAAGACTAC
TATGGTTTACTGCAGTAGTGGTGATCACGCAATGCATGGGTGTCTTCATC
AACATGTACCTCGTACTTCTTGAAGAATCAGGGAGCGTCAAGACGTCGTT
GATCGCCTTCCTGCCCTCAAACCCTCTATTATTAGGCACGTCTCCGGGGG
CGGGGCTTGAATCCGCGTTTGACCAAGCGGACGCCGCGTTTGCAGGTGAT
GTGATTCATGGAGCTATTGATATGTCACGACGTTCACTACTGTTTGTTTT
TGTGGACGTTTCGTAAACATGACTTGCTTGGTGTTTGTCAGCAGTCTTGC
AAGGTTCTCGTTCTACTCCTGCTGCCGAGGATGTCGCCGCTGCGTTCCTG
CTGATTTGTTTCAGAAACAATTACGAAATGTCCACAGGAGGACCTGGTCC
ACCCGAGACAAGCCTCACAAATGTTTTTTGAAAGCTTCACAGCTTCGTTC
TTCGCTCGTATTTCCTTTTTTTCGCAGACCTAATCGTAACGAGCGTTGAC
GACCAGGGGGTAACGCTGGACGATGAGGTGAGGACACACACAAACACACA
CGATAGGACCCTGGAGTATGTAGGTTGGTGTTGCTGGGCGAGCCTCGGTG
AAGCCACTAATGAGAGGAACGCGGCCTTCGCAGACCGTGCTTGCAAACAT
CGCATACAAGTGCGGTCCTGCTGACCACCACATCACACGCGTAGATTGTT
GGGTAGCGGATGCTTACCGTCAGAGGCGGAGAAAAGGTGGACTGAGGACC
TTGATACTAACGAGTGCACAGGCCATTCTTGCCCATGCAAAGCAGACGGG
AGATAGCCCTTCAACAAACACATAGCAACATGATACACGAACCCCCCATA
GATATCCACTGATCCGTATCTAGTGCTGAATACACCTAACACAGATATCA
GGCCCCCTTTCTTTGCACATGACCTTTCAGAAGGAGGTCTTCGGACACAA
CAAACACTGCAAGAAGTATGGAAGGCACAAATGCCCGGCCGGAGCAAAGC
ATGATTTGACCACGCTGGTTCATGTTCGTGCTACCACTCCCGGCCCTCAT
GTTTTTTAGTTGAAACGCAGACAGACCAGGTTCAAACGACGTGCCACGAA
CGAGTTGATTGTGCTCTGCACTTCTGAAAACCCGAAGGTGTGTACACTTT
ATCGTTGTTTCGTGAAGGCAAGTCTAAAACACAACGGCATCGAAACCACA
CACCGTGTTTGTCCTCGTAGAGAGAAGGTCACGTGCTGGCGTTCGCCCCG
CCCTCTGCTCCCTCTTACATTCTACCAGGAGATGCAAGAGCTCGCTCAGT
CAGGAATGATGGATCAAGTCAGCACGTCCAAGAAGAGCAAGGGCCTCTTC
GGCGACATGAAGGATGTGTTCGGGGCGCTGAGCGGCGGAGCTCACATCGT
CAAGCGCGAGGACGGCACTTTGTGACGTCACGTGTCCACGTACACATTGG
CTTGTTTGCCGTGGGATTTATGTTCGCCACCGCGGTTTTTTTCACCATTG
GGTTGTGGGGTCCACCGCCGTGTTATGTGGTACATCTTGCGTATGCGGGA
TCCAGACAGTTGGCGTGACCTGCGCGTGTACTACTGTCCGAGCCACACCA
TATGCGCCATATTTCCGTCCCTTGCCCCTGTTTTTCTTCTTCACTTGTTG
CGAAGAACACGCAGCATTCTTGCAAGTGAGAACGAGGAAATGCTCTAAGG
TTGTCGTGGGCAGCCCGACGTACCCACCGTCACTTGAAGCATGCGGCTTC
TGTGTGAAACGACGTAAAATTCAAGCTTGTAGTCAAGGCATTCACATGCA
CCAACAGGGTACCGGGCGCCAACTTGAACTTCATGGATGCTAAGAGGCGT
TTGAGAGGGGTGTGTCCCAGCCCGAGATCGATTGCGATCCAACATTGTTC
ACGTAACACATGGGGACACAACGTGCGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12406:716..3393+

>mRNA_Ecto-sp13_S_contig12406.1998.1 ID=mRNA_Ecto-sp13_S_contig12406.1998.1|Name=mRNA_Ecto-sp13_S_contig12406.1998.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=879bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12406:716..3393+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATTCGTCTTCGTCTTGTTGTCGTTGCGCTGACTCTCACGACCACGGC
ACACACCTGCAGTGGCTTCATCCCTGCTGCTGCTTCTGCTGTCTCAAGAA
CACCGAGGCCGGTATTTCGAAGTCCAGGGGCAGACAGCAATGGTCGACAT
GTGGGTGCCTACTCTCCTCCTACTGATCAGACTCGACCGCCGCGAACACT
GAAGAATGGAGCCGCCGACAGCAGCGATGACATCGATCTCAGCTCCGCGA
TGGCGAACGCGCGTGCGAACCTCGCGGCAGGTATATCTACACATCTACAT
GCTCACTCCCACAGCCGCTCGCTGTTGCTTGTATTGCGCAGCAGTGATGT
CGTTCTCAAACAGGCTCAGCTGCAGATGCCTGTGCTTTGGGGTCGGCATG
TCATCAATATCCTACAGAATAGGGTTGGGCTGCACAAGATTCCACACCCT
CGGAACCGATGTAAAAGCTGGTCTACGTACATGTACTCCATGACGAAGAG
GATGCATACTGAGAAGATGTATTTTAGGGAAGCCTCTGACGAGACGGCTT
CAACGCCGCCGTTTTCGGCGCAGCCACTCTTTCTGCTATGGAGAAATCGA
GCTTTGAAAATTGGTCCAGAAGGCACGTCTCCGGGGGCGGGGCTTGAATC
CGCGTTTGACCAAGCGGACGCCGCGTTTGCAGACCTAATCGTAACGAGCG
TTGACGACCAGGGGGTAACGCTGGACGATGAGGAGATGCAAGAGCTCGCT
CAGTCAGGAATGATGGATCAAGTCAGCACGTCCAAGAAGAGCAAGGGCCT
CTTCGGCGACATGAAGGATGTGTTCGGGGCGCTGAGCGGCGGAGCTCACA
TCGTCAAGCGCGAGGACGGCACTTTGTGA
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