mRNA_Ecto-sp13_S_contig124.1986.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A6H5KP19_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP19_9PHAE) HSP 1 Score: 197 bits (501), Expect = 1.360e-53 Identity = 97/105 (92.38%), Postives = 101/105 (96.19%), Query Frame = 1
Query: 412 MDRTRAAVQLIAVARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VES 726
MDRTRAAVQLIAVARATAT+IHSRPGGEMTPEDIQPIEQAM MLTPEALGM+PYAHPYISPP ILSGEIRYLHIAQEATFSIGVFVLPPG+CIPLHDHP+M V S
Sbjct: 1 MDRTRAAVQLIAVARATATSIHSRPGGEMTPEDIQPIEQAMAMLTPEALGMVPYAHPYISPPSILSGEIRYLHIAQEATFSIGVFVLPPGSCIPLHDHPDMSVVS 105
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: D8LBN7_ECTSI (Protein C10orf22, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBN7_ECTSI) HSP 1 Score: 146 bits (369), Expect = 3.350e-38 Identity = 69/80 (86.25%), Postives = 73/80 (91.25%), Query Frame = 1
Query: 496 MTPEDIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VESWTG 735
MTPEDIQPIEQAM MLTPEALGM+PYAHPYISPP ILSGEIRYLHIAQEATFSIGVFVLPPGAC+PLHDHP+M + G
Sbjct: 1 MTPEDIQPIEQAMAMLTPEALGMVPYAHPYISPPSILSGEIRYLHIAQEATFSIGVFVLPPGACMPLHDHPDMLTNTRAG 80
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: W7TJB2_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJB2_9STRA) HSP 1 Score: 69.3 bits (168), Expect = 1.150e-8 Identity = 42/123 (34.15%), Postives = 58/123 (47.15%), Query Frame = 1
Query: 358 LALAPKGSRGAGGAGY*LMDRTRAAVQLIAVARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VES 726
++ +G +G G G + R RA P M + PI++ + + LGM+ HP++ PP EI YL + +E F +GVFVLPP A IPLHDHP M V S
Sbjct: 121 ISRKEEGDKGGWGGGRRRLGRRRA------------------PAFAMGMTQVAPIQKILDQIELHHLGMIAPVHPHLQPPTSRPSEIHYLCLLEEEDFHVGVFVLPPEARIPLHDHPGMCVLS 225
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A7S3WF87_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3WF87_9SPIT) HSP 1 Score: 62.8 bits (151), Expect = 2.170e-8 Identity = 32/73 (43.84%), Postives = 43/73 (58.90%), Query Frame = 1
Query: 508 DIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VES 726
D+ + AM LTP +G + P + P + Y+H+ +A FS+G+FVLP GA IPLHDHPEM V S
Sbjct: 13 DLDGAQAAMDELTPGCVGFDTFPPPVTARTPSGVPHVSYVHLFSDAAFSMGIFVLPAGAKIPLHDHPEMTVLS 85
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A8K1FI05_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI05_PYTOL) HSP 1 Score: 67.0 bits (162), Expect = 2.400e-8 Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 1
Query: 496 MTPEDIQPIEQAMVMLTPEALGM-MPYAHPYISPPPILS-------GEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VES 726
+TPE+I+PI+ L PE + +P A S +RY HI ++ATFS+G+FVLPPGA IPLHDHPEM V S
Sbjct: 77 LTPEEIEPIKALCDQLLPEHFQLKVPEAQGKNGTSTATSPRSRPRRNRVRYQHIWEDATFSMGIFVLPPGASIPLHDHPEMSVIS 161
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A851PFY5_9GALL (AEDO dioxygenase (Fragment) n=1 Tax=Penelope pileata TaxID=1118817 RepID=A0A851PFY5_9GALL) HSP 1 Score: 63.5 bits (153), Expect = 7.620e-8 Identity = 38/101 (37.62%), Postives = 51/101 (50.50%), Query Frame = 1
Query: 412 MDRTRAAVQLIAVARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM 714
M R A + VAR T S P G ED+Q + Q + + E L + P P + + Y+HI + +FS+GVF+L GACIPLHDHP M
Sbjct: 1 MPRDNMAALIQRVARQARVTFRS-PAGPGFGEDLQRLRQLLDEVRAEDLHLAPRG-------PAAAAPVSYMHICETESFSMGVFLLRSGACIPLHDHPGM 93
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A835YIT4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YIT4_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.100e-7 Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1
Query: 508 DIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSG-EIRYLHIAQ-EATFSIGVFVLPPGACIPLHDHPEM*VES-------------WTGGRFPPAERLTAVVPML 783
DI + +A+ +T E LG+ P H + P + S +IRYLH+ + E +SIG+F+LPPGA +PLHDHP M V S W G PAER V L
Sbjct: 312 DIAAVTRALEAITAEDLGLKPMGHMMVVPRTLHSSTDIRYLHVTEREDQYSIGIFLLPPGAEMPLHDHPYMHVLSQLLYGGMTLTAMDWVGD---PAERRAKVTQHL 415
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A6J1VTX9_9SAUR (2-aminoethanethiol dioxygenase-like n=4 Tax=Colubroidea TaxID=34989 RepID=A0A6J1VTX9_9SAUR) HSP 1 Score: 64.3 bits (155), Expect = 1.160e-7 Identity = 43/106 (40.57%), Postives = 57/106 (53.77%), Query Frame = 1
Query: 412 MDRTRAAVQLIA-VARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMM----PYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM 714
M R A LI VAR T + G P ++Q + + + ++ E LG++ P A P S PP+ Y+HI + A FS+GVFVL GACIPLHDHP M
Sbjct: 1 MPRDEMAASLIQRVARQARATFGA--GAGEAPAELQRLRELLGQVSAEDLGLLQPRGPSAVPGPSQPPV-----SYMHICETARFSMGVFVLRAGACIPLHDHPGM 99
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: UPI0013778AA7 (2-aminoethanethiol dioxygenase n=1 Tax=Thamnophis elegans TaxID=35005 RepID=UPI0013778AA7) HSP 1 Score: 64.3 bits (155), Expect = 1.210e-7 Identity = 43/105 (40.95%), Postives = 56/105 (53.33%), Query Frame = 1
Query: 412 MDRTRAAVQLIA-VARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMMPYAH---PYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM 714
M R A LI VAR T + GE + E +Q + + + ++ E LG+ P P S PP+ Y+HI + A FS+GVFVL GACIPLHDHP M
Sbjct: 1 MPRDEMAASLIQRVARQARATFGAGSSGEASGE-LQRLRELLGQVSAEDLGLQPRGPSLGPGASQPPV-----SYMHICETARFSMGVFVLRAGACIPLHDHPGM 99
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Match: A0A1W0A2F7_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2F7_9STRA) HSP 1 Score: 66.6 bits (161), Expect = 1.430e-7 Identity = 38/91 (41.76%), Postives = 52/91 (57.14%), Query Frame = 1
Query: 454 RATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGMMPYAHPYISPPPILSGEIRYLHIAQEATFSIGVFVLPPGACIPLHDHPEM*VES 726
RA + S G +T E+I+PI++ + P +G+ S IRY+HI ++A SIG+FVLPPGA IPLH+HPEM V S
Sbjct: 9 RAVVHAVRSVRGRALTIEEIEPIKELCESILPVHVGLEVPTAATAKDAFKGSKAIRYIHIYEDAQVSIGIFVLPPGASIPLHNHPEMSVIS 99 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig124.1986.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig124.1986.1 >prot_Ecto-sp13_S_contig124.1986.1 ID=prot_Ecto-sp13_S_contig124.1986.1|Name=mRNA_Ecto-sp13_S_contig124.1986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=102bp MDRTRAAVQLIAVARATATTIHSRPGGEMTPEDIQPIEQAMVMLTPEALGback to top mRNA from alignment at Ecto-sp13_S_contig124:8103..10841- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig124.1986.1 ID=mRNA_Ecto-sp13_S_contig124.1986.1|Name=mRNA_Ecto-sp13_S_contig124.1986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2739bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:8103..10841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig124:8103..10841- >mRNA_Ecto-sp13_S_contig124.1986.1 ID=mRNA_Ecto-sp13_S_contig124.1986.1|Name=mRNA_Ecto-sp13_S_contig124.1986.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=306bp|location=Sequence derived from alignment at Ecto-sp13_S_contig124:8103..10841- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |