mRNA_Ecto-sp13_S_contig1238.1973.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: D7G822_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G822_ECTSI) HSP 1 Score: 247 bits (631), Expect = 3.590e-72 Identity = 417/482 (86.51%), Postives = 425/482 (88.17%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENWPTGTVDPNAXXXXXXXXXXXXXXXXXXXXXXLRTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLMLKWLRDNDCPWDLEDGGPCAGAAHGVXXXXXXXXXXXXXXXNARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGYIRGWVKNNVWRTTRKRPYRLISSDDTGRSVSNALNTHLVPFGWW*RTLAKECPQ------LAPGVGIVFLFIFPVLAPLPFS*PRGVLFSAHVWGA 1428
M YLA+FVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSV QLTYCLELGLPS+IRQATICNAAARFGRLDLLKLAQESACGWTPAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENWPTGTVDP +XXXXXXXXXXXXXXXXXXXXXX RTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX WLRDNDCPWDLEDGGP XXXXXXXXXXXXXXXNARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGYIRGWVKNNVWRTTRKRPYRLISS DTGRSVS H P W + P +PG G FLFIF +LAPL S P VLF ++GA
Sbjct: 1 MWYLAEFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQESACGWTPATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENWPTGTVDPKSXXXXXXXXXXXXXXXXXXXXXXXRTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWLRDNDCPWDLEDGGPXXXXXXXXXXXXXXXXXXXXXXXNARTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXYGYIRGWVKNNVWRTTRKRPYRLISSGDTGRSVS----MHYAPT--WYHLVGDNGPSPRDARSYSPGGGYRFLFIFHLLAPLRLS-PE-VLFFRQMFGA 474
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5K3L5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3L5_9PHAE) HSP 1 Score: 186 bits (472), Expect = 4.520e-50 Identity = 199/247 (80.57%), Postives = 201/247 (81.38%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENWPTGTVDPNAXXXXXXXXXXXXXXXXXXXXXXLRTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLMLKWLRDNDCPWDLEDGGPCAGAAHG 741
M Y A+FVDQDQYLFIAPV KAFRRAWGPRATVTRPVVADTSV QLTYCLELGLPS+IRQATICNAAARFGRLDLLKLAQ SACGWTPAT XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX TENWPTGTVDPNA LRTHG XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DLEDGGPCAGAA G
Sbjct: 1 MWYFAEFVDQDQYLFIAPVLKAFRRAWGPRATVTRPVVADTSVRQLTYCLELGLPSSIRQATICNAAARFGRLDLLKLAQGSACGWTPATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPTENWPTGTVDPNACPWGPQACAEAAYAGCHDTLKRLRTHGYXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLEDGGPCAGAALG 247
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5L0L3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L3_9PHAE) HSP 1 Score: 153 bits (386), Expect = 5.540e-39 Identity = 107/241 (44.40%), Postives = 117/241 (48.55%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTENWPTGTVDPNAXXXXXXXXXXXXXXXXXXXXXXLRTHGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDLLMLKWLRDNDCPWDLE-DGGP 720
M Y+A+FV QDQYLFI PVSK FRRAWGPRATVTRPVVADTSV QL CL+L LP IR+ +ICNAAARFGRLDLL+LAQESACGWTPAT TENWPTG V PNA LR + XXXXX DL ML+WLR+ND PWDL +GGP
Sbjct: 1 MSYIAEFV-QDQYLFIGPVSKDFRRAWGPRATVTRPVVADTSVKQLRCCLKLDLPLRIRRTSICNAAARFGRLDLLELAQESACGWTPATYACQLAALGCHARVLKWLRSP-------------------------TENWPTGRVAPNACPWDECACADAALAGRHDVVEWLRDNDCPWDGRTAALGGFFDGLQSAFAQXXXXXSESCSWAACRG---DLHMLEWLRENDYPWDLAGEGGP 212
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5K6G3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6G3_9PHAE) HSP 1 Score: 89.0 bits (219), Expect = 5.700e-15 Identity = 45/72 (62.50%), Postives = 56/72 (77.78%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGR 216
M YLA+ VD +QYLFIAPVS A RRAWG RAT+T+PVVADT++ QL +CL+L +IR +I NAAA FG+
Sbjct: 1 MSYLAESVDHNQYLFIAPVSTASRRAWGSRATITQPVVADTTIMQLRHCLKL----SIRHTSIWNAAAHFGK 68
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5L0K8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K8_9PHAE) HSP 1 Score: 83.2 bits (204), Expect = 3.950e-14 Identity = 43/90 (47.78%), Postives = 55/90 (61.11%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPAT 270
+ YLA+FVD +Q+LF A VS+ +R WG R TVT+ + ADTSV QL+ E GL T A +C A GRLDLL+ A+ C W T
Sbjct: 28 LSYLAEFVDDNQHLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT---AAVCETVAGLGRLDLLQRARAMGCPWNENT 114
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5L0J7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J7_9PHAE) HSP 1 Score: 81.6 bits (200), Expect = 5.410e-14 Identity = 42/87 (48.28%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 10 LAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPAT 270
+A+FVD +QYLF A VS+ +R WG R TVT+ + ADTSV QL+ E GL T A +C A GRLDLL+ A+ C W T
Sbjct: 13 VAEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVPQLSLSFECGLRRT---AAVCETVAGLGRLDLLRRARAMGCQWNENT 96
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: A0A6H5KPZ6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KPZ6_9PHAE) HSP 1 Score: 81.3 bits (199), Expect = 2.040e-13 Identity = 42/90 (46.67%), Postives = 56/90 (62.22%), Query Frame = 1
Query: 1 MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPAT 270
+R + +FV + Q+LF APVS+A+R AWG R VT V D+SV+QL Y E GLP + +C A AR G L+LL+ A+ S C W T
Sbjct: 64 LRSIVRFVAEKQFLFFAPVSRAWREAWGCRPAVTSWVTEDSSVSQLRYSFERGLPRD--RPELCAAIARLGNLELLRSARGSGCAWNGLT 151
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: D7FMS7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS7_ECTSI) HSP 1 Score: 80.9 bits (198), Expect = 5.790e-13 Identity = 41/87 (47.13%), Postives = 53/87 (60.92%), Query Frame = 1
Query: 10 LAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPAT 270
+ +FVD +QYLF A VS+ +R WG R TVT+ + ADTSV+QL+ E GL T A +C A GRLDLL+ A+ C W T
Sbjct: 15 VGEFVDDNQYLFFASVSRGWRDVWGKRPTVTKALTADTSVSQLSLSFECGLRRT---AAVCETVAGLGRLDLLRRARAMGCPWNENT 98
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Match: D8LDD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDD9_ECTSI) HSP 1 Score: 66.2 bits (160), Expect = 2.310e-8 Identity = 36/86 (41.86%), Postives = 49/86 (56.98%), Query Frame = 1
Query: 13 AKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLELGLPSTIRQATICNAAARFGRLDLLKLAQESACGWTPAT 270
++FV DQ+LF A VS+A+R AW R T TR + DTS +QL + ++ GL +C A A GRLDLL+ A+ W T
Sbjct: 16 SEFVHDDQFLFFASVSRAWRGAWRGRPTSTRAITPDTSPSQLRHSVDCGLSPG--GTAVCTAIASLGRLDLLRAARALGFRWDKMT 99 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1238.1973.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig1238.1973.1 >prot_Ecto-sp13_S_contig1238.1973.1 ID=prot_Ecto-sp13_S_contig1238.1973.1|Name=mRNA_Ecto-sp13_S_contig1238.1973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=431bp MRYLAKFVDQDQYLFIAPVSKAFRRAWGPRATVTRPVVADTSVTQLTYCLback to top mRNA from alignment at Ecto-sp13_S_contig1238:7828..9367+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig1238.1973.1 ID=mRNA_Ecto-sp13_S_contig1238.1973.1|Name=mRNA_Ecto-sp13_S_contig1238.1973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1238:7828..9367+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1238:7828..9367+ >mRNA_Ecto-sp13_S_contig1238.1973.1 ID=mRNA_Ecto-sp13_S_contig1238.1973.1|Name=mRNA_Ecto-sp13_S_contig1238.1973.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1293bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1238:7828..9367+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |