mRNA_Ecto-sp13_S_contig12342.1956.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12342.1956.1
Unique NamemRNA_Ecto-sp13_S_contig12342.1956.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: D7G064_ECTSI (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G064_ECTSI)

HSP 1 Score: 474 bits (1219), Expect = 4.530e-157
Identity = 324/353 (91.78%), Postives = 326/353 (92.35%), Query Frame = 1
Query:   16 AQALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQVVEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------AKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVIQ 1050
            A+ALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQV+EYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQR ITAMIRFGAAFLVRVGQLETQLYDACLGPEE        XXXXXXXXXXXXX      XXXXXXXXXXXXXXXXXXXXXXX  X        AKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMK  LVQDSQERLIYMATKVIQ
Sbjct:  250 AEALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQVMEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEXXXXXXXXXXXXXXXXXXXXXGTDETKXXXXXXXXXXXXXXXXXXXXXXXGEXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMK--LVQDSQERLIYMATKVIQ 600          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A6H5JKT8_9PHAE (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKT8_9PHAE)

HSP 1 Score: 385 bits (988), Expect = 2.270e-127
Identity = 238/279 (85.30%), Postives = 240/279 (86.02%), Query Frame = 1
Query:   16 AQALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQVVEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX--------AKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE 828
            A+ALARAASAMAYLRRHPEF+EGPQYVDKYVQLLSRALALVKNQVVEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQR ITAMIRFGAAFLVRVGQLETQLYDACLGPEEE       XXXXXXXXXX                       XXXXXXXXXXXX        AKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE
Sbjct:  250 AEALARAASAMAYLRRHPEFLEGPQYVDKYVQLLSRALALVKNQVVEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQRGITAMIRFGAAFLVRVGQLETQLYDACLGPEEEXXXXXXXXXXXXXXXXXNGTYEATGTSSPRGEQVKEGRRNXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCE 528          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A835YUG6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUG6_9STRA)

HSP 1 Score: 179 bits (455), Expect = 1.480e-46
Identity = 125/349 (35.82%), Postives = 166/349 (47.56%), Query Frame = 1
Query:   19 QALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQVVEYLEQ----------------------------------------------------AARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVAT 909
            +AL R  + M YLR HPEF +   Y+ KY QL  RALALVKNQVV+YL+                                                     AARL+ + PV EGRLE S +Y++FR++S RV A VAL+R++ +A      LL +    Y E+RL LLRP VR+HL+AM +QRE+  MIRF + +L+R+GQLE QL+D C+         Q                                                      QR ++  E E    GLY MLL LC E++++LRPR+ H  D+D LCE++ V+REEIVEE RGRHG  Q   + T
Sbjct:  332 EALNRIDTCMRYLREHPEFRDSAAYLVKYGQLQLRALALVKNQVVDYLDXXXXXXXXXXXXXXXXXXXXXRTLALDKNQVVDLXXXXXXXXXXXXXXXXXXXAARLA-DGPVREGRLEMSPVYTKFRAISQRVAADVALIRRHPNA----DHLLIECEGAYLERRLNLLRPPVRAHLDAMHRQRELVGMIRFSSVYLIRIGQLEVQLFDDCMSGSSGSSAQQGDGGSGDSAP--------------------------------------------QRGDDGGENE----GLYNMLLALCDEMYRYLRPRMLHANDIDELCEIIGVVREEIVEEHRGRHGERQARRIQT 627          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A4D9D2E8_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D2E8_9STRA)

HSP 1 Score: 80.5 bits (197), Expect = 8.280e-13
Identity = 95/382 (24.87%), Postives = 149/382 (39.01%), Query Frame = 1
Query:   16 AQALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQVVEYLEQ------AARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPL---------------VKTLLSDFRQLYFEKRLALLRPAVRSHLEAM--SKQREITA--------------MIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQ-LCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVI 1047
            A+ L R   A+ + + HP++ +   Y++K   LL R L+LVK Q++  L+       A++    K      LET+ +YS FRS+S RV   V L+   V                    ++ LL D R+ Y  KR  LL+P +R+HL+    S  R                  +   GA+FL RV  LE+QLY+   GP     + + +                                                     R   A+  E   +G    LL+ LC  LH+ LRP V    D+D LC L+ V RE++++ Q        ++P                       +  +L +  + +D+QERLIY+A +V+
Sbjct:  280 AEVLNRIDQAIIFFQSHPQYQDSRVYLEKMHDLLYRGLSLVKTQILHLLQAGANKATASQRKRNKHAGPELLETAALYSHFRSLSVRVRDLVQLIDARVGGXXXXXXXXXXXXXXXXXRLEELLDDCRKDYAFKRWTLLKPFLRAHLDTAPTSPSRRXXXXXXXXXXXRGSAADVASSGASFLARVCHLESQLYNDFFGPPMRVTEEEGEAISLHGLPPSSSFPPA------------------------------------HRPYRASSQEYYESGALPQLLRGLCLYLHETLRPLVIQEGDLDNLCTLIHVAREDVIQGQMPLRDDMNLSP-----------------------LRDVLER--IAEDAQERLIYVAERVL 600          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A7S4QLM6_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLM6_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.540e-11
Identity = 81/326 (24.85%), Postives = 130/326 (39.88%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYLEQ------AARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVI 1047
            +Y  + + L    L L++  VV+ ++Q      A       P+   +LE S +Y+RF  +S R N  + ++RK +  +     LL+  R  Y   R  LLR  VR+H++ +  Q  +  M R  + FL+R+  +ET LY    G  +++ +  ++                                             A   L  Q   E     +  A     L  LCS LH+ +R  +    D+DTLC++VSV+REE         GL+  +P   AA                 AI TI      ++D+QERLI+ A   +
Sbjct:  251 EYYRRAIVLQEATLFLIQEAVVDRIKQTSSDVQAVLKLPRVPIAADKLEASLVYTRFHGISSRSNMLLTIVRKRLHRSESYGELLTLCRNTYCGARETLLRNTVRAHMDKLKDQHGLVGMTRLASVFLIRLCTVETALYLDFFGDSQKRQKSTSENQDGGEAVVMMRGDTKKKTANAP----------------------AAATLASQVMSEDGTYHD--AEFQSHLSALCSALHRTVRRGLVSVADLDTLCQIVSVLREE--------RGLANNSPTTMAAAR---------------AISTI------IEDAQERLIFCANAAL 523          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A7S4QLN4_9STRA (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QLN4_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.580e-11
Identity = 81/326 (24.85%), Postives = 130/326 (39.88%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYLEQ------AARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVI 1047
            +Y  + + L    L L++  VV+ ++Q      A       P+   +LE S +Y+RF  +S R N  + ++RK +  +     LL+  R  Y   R  LLR  VR+H++ +  Q  +  M R  + FL+R+  +ET LY    G  +++ +  ++                                             A   L  Q   E     +  A     L  LCS LH+ +R  +    D+DTLC++VSV+REE         GL+  +P   AA                 AI TI      ++D+QERLI+ A   +
Sbjct:  251 EYYRRAIVLQEATLFLIQEAVVDRIKQTSSDVQAVLKLPRVPIAADKLEASLVYTRFHGISSRSNMLLTIVRKRLHRSESYGELLTLCRNTYCGARETLLRNTVRAHMDKLKDQHGLVGMTRLASVFLIRLCTVETALYLDFFGDSQKRQKSTSENQDGGEAVVMMRGDTKKKTANAP----------------------AAATLASQVMSEDGTYHD--AEFQSHLSALCSALHRTVRRGLVSVADLDTLCQIVSVLREE--------RGLANNSPTTMAAAR---------------AISTI------IEDAQERLIFCANAAL 523          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A7S4J589_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J589_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 4.580e-11
Identity = 79/326 (24.23%), Postives = 129/326 (39.57%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYLEQAARLSGE------KPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLG----PEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMA 1035
            +Y  + + L   AL L++  V + + Q AR          KP+   +LE S +Y+RF  +S R NA +++++  +        LL   R  Y   R  LLR  VR+H++ +  +  +  M R  + FL+R+  +ET LY    G    PE +  +                                                 A + +DL  +    +V         +L  LC+ LH+ +R  +    D+DTLC++VSV+REE         GL+   P  +AA                 AI  +++      D+QERLI+ A
Sbjct:  200 EYYRRALALHDAALFLIREAVADRIGQTARDVASALDISRKPIAANKLEASLVYTRFHGISVRSNALISIVKDRLDRNEAYGELLDLCRNSYCGGRETLLRNTVRAHMDKLRDRHGLVGMTRLASVFLIRLCTVETSLYLDFFGNKKKPEGKSGEESEDGADESKGEAGNEEDKVAVEAPSSGGSPRVKLSRKTSSSASGGTGGAPQNVDLASDPAFRDVP-----FQTLLANLCASLHRTVRRGLVAVHDLDTLCQVVSVLREE--------RGLADSGPTTSAAAR---------------AIGAVIV------DAQERLIFCA 491          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A448ZLS5_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZLS5_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 8.170e-11
Identity = 77/326 (23.62%), Postives = 129/326 (39.57%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYLEQ--AARLSG----EKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVI 1047
            +Y  + + L   AL L++  VV+ +    A   SG    + P+   +LE S +Y+RF  +S R N  + L++K +        LL   R  Y   R +LL+  +R+H++ +  Q  +  M R  + FL+R+  +ET LY    G  EE+V  + +                                             +KR + L       +           L  L S LH+ +R  +    D+DTLC++VSV+REE          ++  +P   AA                         +S+++D+QERLI+ AT  +
Sbjct:  264 EYYRRSLALQEAALFLIREAVVDRISNTTAQVASGLDIPKTPIAADKLEASLVYTRFHGISSRSNRLLTLVKKRLHCGEAYHELLQLCRTTYCNSRESLLKTTIRAHMDKLKDQHGLVGMTRLASVFLIRLCTVETALYLDFFG--EEKVSEEGKDPDDSDEIKTKQPNQ------------------------------SKRAMALPSRTAKEDATYYDREFQAYLASLTSALHRTIRRGLVTLLDLDTLCQIVSVLREE--------RSMASSSPTTLAAARSI---------------------SSVIEDAQERLIFCATNTL 528          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: A0A1E7F2Q0_9STRA (Conserved oligomeric Golgi complex subunit 3 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F2Q0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.950e-10
Identity = 86/323 (26.63%), Postives = 138/323 (42.72%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYL-----EQAARLSGEK-PVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMAT 1038
            +Y  + + L   AL L++  VV+ +     + A+ L+  K P+   +LE S +Y+RF  +S R N  + L+RK +        LL   R  Y   R +LL+  +R+H++ +  Q  +  M R  + FL+R+  +ET LY    G ++E ++   +     XXXXXXXXXXX                                + D Q                  L  L S LH+ +R  +    D+DTLC++VSV+REE          ++  +P   AA                         +S+++D+QERLI+ AT
Sbjct:  268 EYYRRSLALQDAALYLIREAVVDRISTTTAQVASALNIPKIPIAADKLEASLVYTRFHGISSRSNRLLCLVRKRLHRGEAYHELLQSCRTTYCNSRDSLLKTTIRAHMDKLKDQHGLVGMTRISSVFLIRLCTVETALYLDFFGDKKEVLKEDKEAENDDXXXXXXXXXXXKGITALASRVVKEDGTYY--------------DKDFQ----------------AYLASLASALHRTVRRGLVTVLDLDTLCQIVSVLREE--------RSMASSSPTTLAAARAI---------------------SSVIEDAQERLIFCAT 531          
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Match: B7FSF5_PHATC (Conserved oligomeric Golgi complex subunit 3 n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FSF5_PHATC)

HSP 1 Score: 72.0 bits (175), Expect = 4.560e-10
Identity = 76/326 (23.31%), Postives = 125/326 (38.34%), Query Frame = 1
Query:   88 QYVDKYVQLLSRALALVKNQVVEYLEQAARLS------GEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSAAPLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAFLVRVGQLETQLYDACLGPEEEQVQVQNQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKRELDLQREEEAAEVEEGRAGLYGMLLQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINPVATAAXXXXXXXXXXXXXXXEAAIETILMKASLVQDSQERLIYMATKVI 1047
            +Y  + + L   AL+L++  V + +    +        G KPV   +LE S IY+RF  +S R +  +AL++  V        LL   RQ Y   R  LL   VR+H+E + ++     M R  + FL+R+  +ET LY    G +  +    ++                                                    Q++  A +     A     L  LCS LH+ +R  +    D+DTLC++VSV+REE          ++  +P   AA                         +S++QD+QER+I+ A   +
Sbjct:  237 EYFRRALALQEAALSLLREAVADRIATTCQQIVSVLDLGRKPVKADQLEASLIYTRFHGISSRSHRLLALVKARVHQHEAYAELLQTCRQTYCVHREKLLAKTVRAHMEKLQQEHGPVGMTRLASVFLIRLCTVETSLYLDFFGADTTKPPPHDKAAT-------------------------------------------------QKKTLADDTTYQDAAFQSYLTSLCSALHRTIRRGLVTMLDLDTLCQIVSVLREE--------RSMATSSPTTLAAARAI---------------------SSVIQDAQERVIFCANTTL 484          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12342.1956.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G064_ECTSI4.530e-15791.78Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A6H5JKT8_9PHAE2.270e-12785.30Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A835YUG6_9STRA1.480e-4635.82Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A4D9D2E8_9STRA8.280e-1324.87Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A7S4QLM6_9STRA2.540e-1124.85Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
A0A7S4QLN4_9STRA2.580e-1124.85Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]
A0A7S4J589_9STRA4.580e-1124.23Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A448ZLS5_9STRA8.170e-1123.62Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
A0A1E7F2Q0_9STRA1.950e-1026.63Conserved oligomeric Golgi complex subunit 3 n=1 T... [more]
B7FSF5_PHATC4.560e-1023.31Conserved oligomeric Golgi complex subunit 3 n=2 T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12342contigEcto-sp13_S_contig12342:424..4963 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score479.9
Seed ortholog evalue9.8e-133
Seed eggNOG ortholog2880.D7G064
Preferred nameCOG3
Model size1050
KEGG koko:K20290
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0000280,GO:0000910,GO:0003006,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005794,GO:0005802,GO:0005829,GO:0005886,GO:0006403,GO:0006464,GO:0006486,GO:0006807,GO:0006810,GO:0006888,GO:0006890,GO:0006891,GO:0006996,GO:0007030,GO:0007049,GO:0007112,GO:0007140,GO:0007275,GO:0007276,GO:0007548,GO:0008104,GO:0008150,GO:0008152,GO:0008406,GO:0008565,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009653,GO:0009887,GO:0009987,GO:0010256,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0016043,GO:0016192,GO:0017119,GO:0019538,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0030334,GO:0031090,GO:0031647,GO:0031984,GO:0032501,GO:0032502,GO:0032504,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033206,GO:0033227,GO:0033365,GO:0034613,GO:0034645,GO:0035262,GO:0036211,GO:0040012,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048232,GO:0048285,GO:0048513,GO:0048608,GO:0048609,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050821,GO:0051179,GO:0051234,GO:0051236,GO:0051270,GO:0051301,GO:0051321,GO:0051641,GO:0051649,GO:0051704,GO:0061458,GO:0061640,GO:0065007,GO:0065008,GO:0070085,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0098588,GO:0098791,GO:0099023,GO:0140013,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903046,GO:2000145
Exons7
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2604@1,KOG2604@2759
Ec32 ortholog descriptionConserved oligomeric Golgi complex, subunit 3
Ec32 orthologEc-05_003960.1
Cds size1050
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12342.1956.1prot_Ecto-sp13_S_contig12342.1956.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12342 424..4963 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462657.0506-CDS-Ecto-sp13_S_contig12342:423..4771681462657.0506-CDS-Ecto-sp13_S_contig12342:423..477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 424..477 -
1681462657.0610094-CDS-Ecto-sp13_S_contig12342:1043..12111681462657.0610094-CDS-Ecto-sp13_S_contig12342:1043..1211Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 1044..1211 -
1681462657.0692549-CDS-Ecto-sp13_S_contig12342:1891..22851681462657.0692549-CDS-Ecto-sp13_S_contig12342:1891..2285Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 1892..2285 -
1681462657.0781343-CDS-Ecto-sp13_S_contig12342:2950..30301681462657.0781343-CDS-Ecto-sp13_S_contig12342:2950..3030Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 2951..3030 -
1681462657.087128-CDS-Ecto-sp13_S_contig12342:3894..39901681462657.087128-CDS-Ecto-sp13_S_contig12342:3894..3990Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 3895..3990 -
1681462657.0961416-CDS-Ecto-sp13_S_contig12342:4429..45401681462657.0961416-CDS-Ecto-sp13_S_contig12342:4429..4540Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 4430..4540 -
1681462657.1048875-CDS-Ecto-sp13_S_contig12342:4816..49631681462657.1048875-CDS-Ecto-sp13_S_contig12342:4816..4963Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12342 4817..4963 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12342.1956.1

>prot_Ecto-sp13_S_contig12342.1956.1 ID=prot_Ecto-sp13_S_contig12342.1956.1|Name=mRNA_Ecto-sp13_S_contig12342.1956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
MPCLHAQALARAASAMAYLRRHPEFIEGPQYVDKYVQLLSRALALVKNQV
VEYLEQAARLSGEKPVVEGRLETSEIYSRFRSVSHRVNAGVALMRKYVSA
APLVKTLLSDFRQLYFEKRLALLRPAVRSHLEAMSKQREITAMIRFGAAF
LVRVGQLETQLYDACLGPEEEQVQVQNQQQRETAASSSNGTDEAKESSSP
RGEEGGGGRGNQQEEEGQEEEEEAKRELDLQREEEAAEVEEGRAGLYGML
LQLCSELHKHLRPRVYHGTDMDTLCELVSVIREEIVEEQRGRHGLSQINP
VATAAAGAGAGHEGDGGGGGEAAIETILMKASLVQDSQERLIYMATKVIQ
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mRNA from alignment at Ecto-sp13_S_contig12342:424..4963-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12342.1956.1 ID=mRNA_Ecto-sp13_S_contig12342.1956.1|Name=mRNA_Ecto-sp13_S_contig12342.1956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4540bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12342:424..4963- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTGCCTGCACGCGCAGGCCCTTGCTCGCGCGGCCTCCGCCATGGC CTACCTCCGGCGGCACCCTGAGTTCATCGAGGGCCCGCAGTACGTCGACA AGTACGTCCAGCTGCTGTCGCGAGCTCTCGCGCTCGTCAAGAATCAGGTG TGTAGATGTGAACCGCTCTCGCTTCTACATCTGTTGATAGTACGACAACG CAATATTTTCTCCTGCTACTGCTGCTGCTGCTGCTACTGCTGCTGCTGCT GCTCTTGCTGTCATTGGCGTGCATTATGTGGAGGCGTGTGTTCGTCCGGT CATGATCAAGTGTTTGTGTGATTTCTCTGTCTCTGTCTCTGTCTCTGCCT GTCTCTCTCTCTATCTCTCTCTCCCTCTCTCTCTCTTGTCGTTGTCATCA TCGTCGTCTTCTTCGTGGCAAAGGTGGTGGAGTACCTGGAACAAGCGGCG AGGCTGTCGGGGGAGAAACCGGTCGTGGAAGGCCGCTTGGAGACCTCGGA GATCTACTCGCGCTTCAGGAGCGTCTCTCACCGGGTGAGCGATTTGAAAA ACGCTCGTGCCGTATACGTGAGAACGTCAGCGGTACACTGCGTATACTTT TGCGTGTCGTAGCAGATGGCTGTGTCAAGGTAGTCATGCTCGGGGACAAT GCAGAGAAGGGCCTAAAAGTTGCTCCGTTGCAAGCTCCAAAAAGCGTGGA CTTGATGTAAATTTTCTCGGAAAGCCAACAAAGGCTGCGGACATCGCGAG ATTGGAAAGGGTTGCGGCGTGTAGTGAGTAATCACTCAGTTGGTAGAGCT GCCGTTTAGCCCGAAGCGCGACCCGGGTCAGCGCAGCTCGCCGGAATTGC TTTTTCGGACCAAAAAGGGGCAAGCACCGACCGCTATGGTTTTCCAGTAT GTAGTAGTTTCCTGCTTGTGTGCCGTCGACATCAGTCGAAACAAACAAAC AACGCACAATACCCAAAAACCAGGTTAACGCGGGGGTGGCCCTGATGCGC AAGTACGTCTCCGCGGCACCCCTCGTCAAGACGCTTCTGTCCGACTTCAG GCAACTCTACTTCGAAAAGGTGTGCATACGGCGTGGGTACACGGATGACC AACCTGTTCCTCCAAGTCACCGTACTCGATTGGGTTCGAACAAGGTTGTT TTCCGAGGGGGGTGCGTCTGCTCCCTCCCTGCCTCCCTGGGGTTCCGGGT GATCAATTCCCTGCCCTTGCGCTTTATTTGGTCCTCTAGACTTGTTGTCC GAGTGTGGGTTTCGCCAGTGGGGGAGGTTTTGTTTTTTTTTCGAACGAGG CGCCTCTTCCGGGCTGTAGTCGGTTTTTGCTGTTTTGTCTCCGGCAGGCA AGGAGACAAGACAGGCGATGACAACGACAGGCTTTCGGTTTTGCCTGGAT GTATACGTGTTCGGCGTCTGAAAGCGACGCGCTTGGGTGGCGAGGTTTGC TAAAAGCCGTTCTCTCGGGTGCCATGGCGTTGTCGGGAAACGCTCGTGCA GGTATTTGATTCGGCAAGAGGTTTTTGTTTTCTGACCATACGTACGTGTG GTCAGGAGAGACGGAGAGAGGAGCACCTCCGGCGTGTGCCCGGCTTCTTA GACCCTTTGGCCTATTACCGTTACGTCCATGCGTACAAGCGTGCGATGCC ACAGCGCGACAGTATCAGGTTCCGCTGTCTCCTGCTAGACTGCTGAATCT GGGGCATTTTTCAGGGTTGTCCTTCGTCCGTCGCTCCAAAATGAATCGGT CAAGCACAGCCCCTCGTGAACGTGTTTGATGTGTAGCTGTACCGGTACGT ATGGCGTGCTCGCATCAGAGATCGGTGTCCCAACAATGACTTAAGTGTTT GTCCATGTCTTTGGTGTGTGCTTGTTTTCTGACCGTCCCCGTTGTGTGTC TGCCTGTGCTTGTAAACGTGTTACTTTTTCCAGAGACTGGCCCTGCTTCG GCCCGCTGTCCGCTCTCACCTGGAGGCGATGTCGAAGCAGAGGGAAATCA CCGCGATGATAAGGTGTGGACCTGCTGCCTTGGTTGGTGTTGTATTTTGC TGTACCAGCATGTTGTGGTAACGATGCTCCCGCTGGTGTTGATGTTGAGA GTGGCTTTGTCGTTCTGTCTCTCTGCCTCCCTCTCTCTATTTCTCTCTAT TTCTCTCTGCCTCTCTCTCTCTCCTCTCTCTCTCTCTTCCTTGTTCATGT GATGGCGGCGAGAAAATGTGCCGTCTTTCATGTATACACCTGGCGTTCTC AAATGTCCCACACGCGAGAAAAACGGGGTGGTGTGACGGAATGGAAAACG ATCGGAATTCAGACCAGACAGCAGTGTTTTTTAAGGGCGCTTGTGGTGGC TGTATGAAGTCCGTTCCAAAGTCTTGTGTTGTTCTCGGCATCGTTGGCGA CATGGACGTCCACGTCTTCAAAAGGTGTAAATGCCAATAAGTTATTTCCA TGTCTTGGTGAAGAGCCGGGGTGTGATCCGAGTGATATTGCTAAATAGGC TTTTGCTGCCCTGGTTTCTCGTGTTCTTGTTGTTTTGCTCCCAGAAGAAA CTCACTTTCCCGAAGTAAAAGAAGACGATAAAACGTTTTGGTGGCGTGCG TGTGTGTGTCTTGTGCTTCGGCGGATAAATAAAAATGATGATGACGACAA CGACGACGACGACGACGGGTTTGCAAAGGTTTGGGGCGGCGTTTCTCGTG CGGGTCGGGCAGCTGGAGACACAGCTCTACGACGCCTGCCTGGGCCCCGA GGAGGAACAAGTACAGGTTCAGAACCAACAACAGCGAGAAACCGCCGCCT CCAGCAGCAATGGCACCGACGAGGCCAAGGAGAGTTCATCCCCACGAGGG GAAGAAGGCGGGGGGGGACGGGGCAACCAGCAGGAGGAGGAGGGCCAAGA AGAGGAGGAAGAAGCGAAGAGGGAGCTGGACCTCCAGAGGGAGGAGGAGG CCGCCGAGGTGGAGGAGGGTCGGGCGGGGCTCTACGGGATGCTGCTGCAG CTGTGCTCCGAGCTGCACAAGCACCTCCGCCCGAGGGTGTACCACGGCAC GGACATGGACACCCTCTGCGAGGTGCGTACATACCCGGCGGGGGGGGGCA TGTGGGCTGTCTGGTGGTTCCGTGGAATCAATATAGCGACCGGGGGGGAG GGCACGAACCATCCATCTCTCTTTGAACCGCCTTCGCGAGGGTCTTGGAG ACAATCTACGAAATAAGGAGGGGGCCTTCGAGTTAATCTACGAAATAGAG AGGGGCCCTTCGTATCCCTAACCCACCTCGCGCCCCTTATTACTAAAACC AAGCTCAAATTCCTTTCGAAGGCTGCTGCTCTCTTTTTTTTGTTACCCTG TTGCCCGGCCGCGGCTCAGCCTGCTACTGCTGTGCTGTGCTACTGCTGTG GCACGTGGCCGTCCTTGTCGGAATGATGTTTCCCTTCTCTCCCAGCTTCC CAACATCCCTCCCACTGCTACGATGATCACGTAATCCCCCCTTTGTAGTT TTCGCGTGTCTGCCCCCCCCCCCCCGCAGCTTGTGGTTCGTCCTCGTGGA ACGCAGCCTGTGCCGGCTACGAAAATCCGGGATACCTTTTCCTTCCCAGC TGCGAGGCCTCGCGGCTACGGCATGCGTTTGCACCCCCCCCATCCCCTTC CCCTTGCATTCAGTGTCGTCACTTCATGCGTTAACATTGGAACACTGCCC CCTCCCCTGTTCCCCTTGCATTCGGCGTCGACACCTTCCATTTTTGCGAC AGCTTGTCAGCGTGATCCGCGAGGAGATTGTGGAAGAGCAGCGAGGGCGC CACGGGTTGAGCCAGATCAACCCGGTGGCAACGGCAGCGGCGGGGGCGGG AGCAGGCCACGAGGGGGACGGTGGCGGAGGAGGGGAGGCTGCGATCGAGA CCATCCTCATGAAGGCGAGTGTTTGGGAGTAGAAAGCTGGCGGCAACAGA GAGGATTGTTGACTTTCCTGCTTTTTTTTTGTTTTGATTGGAGCGGGAGT GTGTCTGGCCGCCGCTGCTGCGCGTTGCCATACGCTTTTGGTCGAGAGAT GCTTATGATACAATGTTCTGTTATTTTGTTCGTCTTCTTGGGCGCTTGCG AAACATTTGTCTGTGCAGTCTACGACCACGCCTCCGGTCGGTATATCCTT CCCTCCCCTTCCCTCCCCAACGAATCTAGCCCCGAGCCCCCATACCCCTA CCGCCAATCCCCTGTTCCCTAGTTCATACCCCCCCCCCCATGTCCCGAAC CCCTGATCCCAATCCCCCATCCCCTAACCCTTCATCCCCCCGATCTCCTC TTCCCTGTCTCCCCATGTTCCCTAGTTCCTACCCCCCCCCCCCTGTCCCC GAACCCCGATCCCCTTACCCCTAACCCCGCCGATCCCCTGTTCCCTATTT CGTGCCCCCCACCCCATATCCCCGAACCCCTCTTGCCCATCCCCTGACAA ACCCCCATCCCCCGTCACTCTTCGCCCCATCGCCAGCTGGTGCAAGACTC CCAAGAAAGGTTGATCTACATGGCCACCAAAGTTATCCAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12342:424..4963-

>mRNA_Ecto-sp13_S_contig12342.1956.1 ID=mRNA_Ecto-sp13_S_contig12342.1956.1|Name=mRNA_Ecto-sp13_S_contig12342.1956.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12342:424..4963- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCTTGCCTGCACGCGCAGGCCCTTGCTCGCGCGGCCTCCGCCATGGC
CTACCTCCGGCGGCACCCTGAGTTCATCGAGGGCCCGCAGTACGTCGACA
AGTACGTCCAGCTGCTGTCGCGAGCTCTCGCGCTCGTCAAGAATCAGGTG
GTGGAGTACCTGGAACAAGCGGCGAGGCTGTCGGGGGAGAAACCGGTCGT
GGAAGGCCGCTTGGAGACCTCGGAGATCTACTCGCGCTTCAGGAGCGTCT
CTCACCGGGTTAACGCGGGGGTGGCCCTGATGCGCAAGTACGTCTCCGCG
GCACCCCTCGTCAAGACGCTTCTGTCCGACTTCAGGCAACTCTACTTCGA
AAAGAGACTGGCCCTGCTTCGGCCCGCTGTCCGCTCTCACCTGGAGGCGA
TGTCGAAGCAGAGGGAAATCACCGCGATGATAAGGTTTGGGGCGGCGTTT
CTCGTGCGGGTCGGGCAGCTGGAGACACAGCTCTACGACGCCTGCCTGGG
CCCCGAGGAGGAACAAGTACAGGTTCAGAACCAACAACAGCGAGAAACCG
CCGCCTCCAGCAGCAATGGCACCGACGAGGCCAAGGAGAGTTCATCCCCA
CGAGGGGAAGAAGGCGGGGGGGGACGGGGCAACCAGCAGGAGGAGGAGGG
CCAAGAAGAGGAGGAAGAAGCGAAGAGGGAGCTGGACCTCCAGAGGGAGG
AGGAGGCCGCCGAGGTGGAGGAGGGTCGGGCGGGGCTCTACGGGATGCTG
CTGCAGCTGTGCTCCGAGCTGCACAAGCACCTCCGCCCGAGGGTGTACCA
CGGCACGGACATGGACACCCTCTGCGAGCTTGTCAGCGTGATCCGCGAGG
AGATTGTGGAAGAGCAGCGAGGGCGCCACGGGTTGAGCCAGATCAACCCG
GTGGCAACGGCAGCGGCGGGGGCGGGAGCAGGCCACGAGGGGGACGGTGG
CGGAGGAGGGGAGGCTGCGATCGAGACCATCCTCATGAAGGCGAGTCTGG
TGCAAGACTCCCAAGAAAGGTTGATCTACATGGCCACCAAAGTTATCCAG
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