mRNA_Ecto-sp13_S_contig12303.1932.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12303.1932.1
Unique NamemRNA_Ecto-sp13_S_contig12303.1932.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12303.1932.1 vs. uniprot
Match: A0A6H5K0P9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0P9_9PHAE)

HSP 1 Score: 471 bits (1212), Expect = 9.190e-167
Identity = 235/255 (92.16%), Postives = 243/255 (95.29%), Query Frame = 1 
Query:    1 MASLRLARAGAINHGVFLSGSLTNDGHARIDAFVDRWHCRRSAERSGLILAAVLEHVARSVRTRLLAGYLDRWRKTRAPLPRTLLRPKTFLLLDMRRRDNLHRVLTAWGLLTRQMHADRALTRRKGVRVARQLGRGDAKLRAAGFSRWIGATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQHMAFHRLSAWRAERVAARMLRDALTATRLRGAWVTWRCTVARDNRSMMARQAWCVLSS 765
            MASLRLARAGAIN GVFLSGSLTNDGHAR+DAFVDRWHCRRSAERSGLILAAVLEH+ARSVRTRLLAGYLDRWR+TRAPLPRTLLRPKTFLLLDMRRRDNLH+ LTAWGLLTRQ+HADRALTRRKG RVARQL RGDAKLRAAGFSRWI ATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQH+AFHRLSAW AERVAAR LRD LT T LRGAWV WRCTVARDNRSMMARQAWCV+ +
Sbjct:    1 MASLRLARAGAINQGVFLSGSLTNDGHARVDAFVDRWHCRRSAERSGLILAAVLEHLARSVRTRLLAGYLDRWRRTRAPLPRTLLRPKTFLLLDMRRRDNLHKALTAWGLLTRQLHADRALTRRKGARVARQLRRGDAKLRAAGFSRWIEATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQHLAFHRLSAWHAERVAARALRDVLTTTLLRGAWVAWRCTVARDNRSMMARQAWCVIEA 255
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BLAST of mRNA_Ecto-sp13_S_contig12303.1932.1 vs. uniprot
Match: D7FH10_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH10_ECTSI)

HSP 1 Score: 469 bits (1206), Expect = 8.720e-166
Identity = 235/273 (86.08%), Postives = 248/273 (90.84%), Query Frame = 1 
Query:    1 MASLRLARAGAINHGVFLSGSLTNDGHARIDAFVDRWHCRRSAERSGLILAAVLEHVARSVRTRLLAGYLDRWRKTRAPLPRTLLRPKTFLLLDMRRRDNLHRVLTAWGLLTRQMHADRALTRRKGVRVARQLGRGDAKLRAAGFSRWIGATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQHMAFHRLSAWRAERVAARMLRDALTATRLRGAWVTWRCTVARDNRSMMARQAWCVLSSGKLGGRATQENCRFGTLP 819
            MASLRLARAGAIN GVF+SGSL+NDGHAR+DAFVDRWHCRRSAERSGLILAAVLEH+A SVRTRLLAGYLDRWR  RAPLPRTLLRPKTFLL+D RRRDNLH+ LTAWGLLTRQ++A+RAL RRKG RVARQLGR +AKLRAAGFSRWI AT  RRDEE RRVGCFERWK+FVLLCQHNSSWGVERAMRVL RAWLQH+AFHRL AWRAERVAAR LRDA +AT LRGAWV WR TVA DNR  MARQAW VLSSGKLGGRATQENCRFG LP
Sbjct:    1 MASLRLARAGAINQGVFVSGSLSNDGHARVDAFVDRWHCRRSAERSGLILAAVLEHLAWSVRTRLLAGYLDRWRSNRAPLPRTLLRPKTFLLVDTRRRDNLHKALTAWGLLTRQLYAERALARRKGARVARQLGRREAKLRAAGFSRWIDATLERRDEERRRVGCFERWKIFVLLCQHNSSWGVERAMRVLHRAWLQHLAFHRLLAWRAERVAARALRDAFSATLLRGAWVAWRFTVALDNRDRMARQAWYVLSSGKLGGRATQENCRFGALP 273
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12303.1932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K0P9_9PHAE9.190e-16792.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH10_ECTSI8.720e-16686.08Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12303contigEcto-sp13_S_contig12303:2165..4477 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size822
Hectar predicted targeting categorymitochondrion
Exons4
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-26_003050.1
Cds size822
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462655.2163737-CDS-Ecto-sp13_S_contig12303:2164..23491681462655.2163737-CDS-Ecto-sp13_S_contig12303:2164..2349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12303 2165..2349 +
1681462655.2282956-CDS-Ecto-sp13_S_contig12303:2893..32391681462655.2282956-CDS-Ecto-sp13_S_contig12303:2893..3239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12303 2894..3239 +
1681462655.2376692-CDS-Ecto-sp13_S_contig12303:3950..41721681462655.2376692-CDS-Ecto-sp13_S_contig12303:3950..4172Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12303 3951..4172 +
1681462655.2456102-CDS-Ecto-sp13_S_contig12303:4408..44771681462655.2456102-CDS-Ecto-sp13_S_contig12303:4408..4477Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12303 4409..4477 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12303.1932.1prot_Ecto-sp13_S_contig12303.1932.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12303 2165..4477 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12303.1932.1

>prot_Ecto-sp13_S_contig12303.1932.1 ID=prot_Ecto-sp13_S_contig12303.1932.1|Name=mRNA_Ecto-sp13_S_contig12303.1932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=274bp
MASLRLARAGAINHGVFLSGSLTNDGHARIDAFVDRWHCRRSAERSGLIL
AAVLEHVARSVRTRLLAGYLDRWRKTRAPLPRTLLRPKTFLLLDMRRRDN
LHRVLTAWGLLTRQMHADRALTRRKGVRVARQLGRGDAKLRAAGFSRWIG
ATRARRDEESRRVGCFERWKLFVLLCQHNSSWGVERAMRVLRRAWLQHMA
FHRLSAWRAERVAARMLRDALTATRLRGAWVTWRCTVARDNRSMMARQAW
CVLSSGKLGGRATQENCRFGTLP*
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mRNA from alignment at Ecto-sp13_S_contig12303:2165..4477+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12303.1932.1 ID=mRNA_Ecto-sp13_S_contig12303.1932.1|Name=mRNA_Ecto-sp13_S_contig12303.1932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2313bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12303:2165..4477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGCCTTCGCCTCGCGAGGGCCGGTGCGATCAACCACGGAGTGTT
CTTGTCCGGGTCTCTGACTAACGACGGGCACGCTCGGATAGATGCCTTCG
TCGACCGCTGGCACTGCAGGCGCTCGGCGGAAAGATCGGGGCTTATCCTC
GCGGCGGTACTTGAACACGTAGCCCGGAGCGTAAGGTAAGGGGGGAGGTC
CTCTCTTCCAAACAGTCCTTGGGCATGCAGATAGGGAACGGCAGAGGCGT
AGAAGAGGTCGATCTGCAAAGTTTCACGTGCTGTTTTCGCGGATGTGTGG
TTCCAATGTGTTCAAGAATTCAAGTAGCGTGCCTGAACGAATCAATTTGT
TCATCTTGAAAGAGAAGGCTGCCACGCTCTCGTTCAACCTCATTCAAGAA
CTGGCAAGGCGCACCGGTTTGCAATCTAGGACCACAAGACGGCCTACGCA
ATAATGAGTCGCATCTAGATGCCCCAAACCGTTAGGTATTCATCACACTT
TCAATTAACCTACATGTGTTGATGCACTGTTCGCGAAAACCGCTCAACAC
CGGTGGGGTGGTACAGCCTACCCTCGGTAGAGGCGGTACACTGAAGTGCA
CGTTCACACATCTATCAGGCATTCACTCAAATACACTAAATATGGAAGCA
AAGGCACCACGTTCCACGGCTTACTCTTGCTGCTCATGTTATTTTCTCGG
TGTTTCGGCCCCGCCAACCATTCTTTCAGGACTCGACTCCTCGCCGGCTA
CCTCGACCGCTGGAGGAAAACCCGCGCCCCGCTGCCCCGCACGCTCCTCC
GGCCCAAGACCTTCCTCCTCCTCGACATGCGCCGTCGAGACAACCTGCAC
AGGGTCCTGACGGCGTGGGGTCTGCTGACCCGTCAGATGCATGCTGACCG
AGCCCTGACGAGGAGGAAAGGTGTTCGCGTCGCCCGCCAGCTGGGGCGGG
GGGACGCGAAGTTGAGGGCGGCCGGCTTTTCCAGGTGGATCGGAGCTACT
CGGGCACGGAGGGATGAAGAGAGTCGGCGGGTTGGGTGCTTCGAGCGGTG
GAAGCTCTTCGTGCTCCTTTGCCAGGTGGGTGGACGTGGGGCTTTGGGTC
GGGAAGCGTTGATGCCTGTTGGTTGAGGTTGCGTAGGCATGCTTGAAGGT
GCCGGGAACAGCAGGACATTCTTCTTCTTCGCATGGATAAGCTAAGTGTG
TGATAGCACGACTTGATTTTCACGTCCTTGCAAGATCGAGAACGGAGCGA
ACGTCGAGTTTTGTCTCGTCACTCAAGTAGGCATTTTTCTTGTCAAGAAC
TAAGGACCTGCGCCGGGATGTGGGCGGCAAGTCGCAGGAAGCGCACGACA
AACCGCGTGTAAGGGGAGGGCTTTCTTGCACCTCGTGCCTGCATCTCCCC
GACCCTGTGCTGGCTTCGGCTGCCGGGATAGAGTCCTTGCTGAGCCTTGC
ACCAACCCCCTGCGACCTTCGCTTGCCGCACAACGCGATTTAGCGGGTTT
CGCATAGGTGTGCTTCTTGTTCGATCTCATCTCGTCGAATCCAGCAGGTG
TAGCGAGAGGTAGGGTTTGGATGTAGTGGACTTTGGACGTGTGTGTGTGC
TGCAAGCAGTGCACTCGGATAGACTACCCGAAAAAACGACTCTCAACGAG
AAGTGTCCACATAGTTTCCACGTCTCCACACCTCCTACCTCCTACCTTCT
CGTTTTCAACGCGACGTTGCAACCCGCCCCATCTAACGGCTGTGTGTCAC
TGTTATTCACGTTCTGACGATAACAACATCGTCAAGCACAACTCAAGCTG
GGGGGTCGAGCGCGCTATGCGCGTTCTCCGCCGCGCGTGGCTGCAGCACA
TGGCTTTCCACCGCCTCTCGGCCTGGCGCGCTGAGCGGGTGGCGGCGCGG
ATGTTGCGCGACGCCCTGACCGCGACCCGGTTGCGGGGCGCCTGGGTGAC
GTGGCGGTGCACGGTTGCGCGCGACAACCGAAGCATGATGGCTCGACAAG
CGTGGTGCGTGATTGAGGCACCCATCTATTGTTCATATTTCGTACACAAC
CTAGTAGCATTGTGAGAGTTGAGACGTGTGGAAGTCAAAGGCTACGGACT
GTCGAAATTTCTATTTTTTCTCCATTACAATTTTCTTGTTGCTTTGTTTG
TGGGAAACGCAATAGACACAGTACTACAACGCCACTACGGCCACCACCAC
CTTCTTGCAAAAAACAAACGGAACGGCTGTCGTTCGGCATCCAGGTACTG
TCTAGCGGCAAACTTGGAGGAAGGGCGACGCAAGAAAACTGCCGCTTTGG
CACACTACCGTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12303:2165..4477+

>mRNA_Ecto-sp13_S_contig12303.1932.1 ID=mRNA_Ecto-sp13_S_contig12303.1932.1|Name=mRNA_Ecto-sp13_S_contig12303.1932.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=822bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12303:2165..4477+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCAGCCTTCGCCTCGCGAGGGCCGGTGCGATCAACCACGGAGTGTT
CTTGTCCGGGTCTCTGACTAACGACGGGCACGCTCGGATAGATGCCTTCG
TCGACCGCTGGCACTGCAGGCGCTCGGCGGAAAGATCGGGGCTTATCCTC
GCGGCGGTACTTGAACACGTAGCCCGGAGCGTAAGGACTCGACTCCTCGC
CGGCTACCTCGACCGCTGGAGGAAAACCCGCGCCCCGCTGCCCCGCACGC
TCCTCCGGCCCAAGACCTTCCTCCTCCTCGACATGCGCCGTCGAGACAAC
CTGCACAGGGTCCTGACGGCGTGGGGTCTGCTGACCCGTCAGATGCATGC
TGACCGAGCCCTGACGAGGAGGAAAGGTGTTCGCGTCGCCCGCCAGCTGG
GGCGGGGGGACGCGAAGTTGAGGGCGGCCGGCTTTTCCAGGTGGATCGGA
GCTACTCGGGCACGGAGGGATGAAGAGAGTCGGCGGGTTGGGTGCTTCGA
GCGGTGGAAGCTCTTCGTGCTCCTTTGCCAGCACAACTCAAGCTGGGGGG
TCGAGCGCGCTATGCGCGTTCTCCGCCGCGCGTGGCTGCAGCACATGGCT
TTCCACCGCCTCTCGGCCTGGCGCGCTGAGCGGGTGGCGGCGCGGATGTT
GCGCGACGCCCTGACCGCGACCCGGTTGCGGGGCGCCTGGGTGACGTGGC
GGTGCACGGTTGCGCGCGACAACCGAAGCATGATGGCTCGACAAGCGTGG
TGCGTACTGTCTAGCGGCAAACTTGGAGGAAGGGCGACGCAAGAAAACTG
CCGCTTTGGCACACTACCGTAG
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