mRNA_Ecto-sp13_S_contig12268.1902.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12268.1902.1
Unique NamemRNA_Ecto-sp13_S_contig12268.1902.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: D8LMK5_ECTSI (Similar to tripeptidylpeptidase II n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK5_ECTSI)

HSP 1 Score: 123 bits (308), Expect = 5.170e-31
Identity = 59/62 (95.16%), Postives = 59/62 (95.16%), Query Frame = 1 
Query:    1 MASTPAASNGGGDGTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQV 186
            MASTPA SN GGDGTFPVLGLLPKQETEAWEFLK NPQLDGRGVKVAIFDTGVDPAASGLQV
Sbjct:    1 MASTPATSNSGGDGTFPVLGLLPKQETEAWEFLKANPQLDGRGVKVAIFDTGVDPAASGLQV 62
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A8J1V0F7_OWEFU (Tripeptidyl-peptidase 2 n=1 Tax=Owenia fusiformis TaxID=6347 RepID=A0A8J1V0F7_OWEFU)

HSP 1 Score: 75.9 bits (185), Expect = 2.210e-14
Identity = 34/52 (65.38%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   37 DGTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRS 192
            D  FP+ GLLPK+ET AW FL   P+ DGRG  VAI DTGVDP A GLQV S
Sbjct:   25 DSEFPIFGLLPKKETNAWSFLSKYPEYDGRGTLVAIMDTGVDPGAPGLQVTS 76
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A2E6HFS1_9BACT (Tripeptidyl-peptidase II n=1 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E6HFS1_9BACT)

HSP 1 Score: 73.6 bits (179), Expect = 1.440e-13
Identity = 33/52 (63.46%), Postives = 40/52 (76.92%), Query Frame = 1 
Query:   40 GTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRSS 195
            GTFP+ G+LPK ET A  FL+ +P  DGRG+ VAIFDTGVDP A GLQ+ S+
Sbjct:   25 GTFPLQGILPKAETGAIRFLEEHPNYDGRGITVAIFDTGVDPGAPGLQITST 76
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A1D1UQI9_RAMVA (Uncharacterized protein n=1 Tax=Ramazzottius varieornatus TaxID=947166 RepID=A0A1D1UQI9_RAMVA)

HSP 1 Score: 71.6 bits (174), Expect = 1.690e-13
Identity = 31/52 (59.62%), Postives = 41/52 (78.85%), Query Frame = 1 
Query:   40 GTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRSS 195
            G +P  GL+PK+ET A++FL+  P  DGRG+K+AIFD+GVDP A GLQV S+
Sbjct:    4 GLYPFEGLIPKRETGAFDFLRKYPDYDGRGIKMAIFDSGVDPGAEGLQVTST 55
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A2E0PE30_9BACT (Tripeptidyl-peptidase II n=2 Tax=Verrucomicrobiales bacterium TaxID=2026801 RepID=A0A2E0PE30_9BACT)

HSP 1 Score: 73.2 bits (178), Expect = 1.960e-13
Identity = 33/50 (66.00%), Postives = 38/50 (76.00%), Query Frame = 1 
Query:   43 TFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRS 192
            TFP+ G+LPK+ET A  FL  NP  DGRG+ VAIFDTGVDP A GLQ+ S
Sbjct:   25 TFPLQGILPKEETGALRFLDANPIYDGRGITVAIFDTGVDPGAPGLQITS 74
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: R4XGH2_TAPDE (Tripeptidyl-peptidase II n=1 Tax=Taphrina deformans (strain PYCC 5710 / ATCC 11124 / CBS 356.35 / IMI 108563 / JCM 9778 / NBRC 8474) TaxID=1097556 RepID=R4XGH2_TAPDE)

HSP 1 Score: 72.4 bits (176), Expect = 3.650e-13
Identity = 35/51 (68.63%), Postives = 39/51 (76.47%), Query Frame = 1 
Query:   43 TFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRSS 195
            +FPV  L PK ET A +FL+ NP  DGRGVKVAIFDTGVDPAA GLQ  S+
Sbjct:    6 SFPVSALQPKAETRADKFLEANPTFDGRGVKVAIFDTGVDPAAIGLQKTST 56
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A397VPK3_9GLOM (Tripeptidyl-peptidase II n=2 Tax=Gigaspora TaxID=4873 RepID=A0A397VPK3_9GLOM)

HSP 1 Score: 72.4 bits (176), Expect = 3.660e-13
Identity = 32/49 (65.31%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   46 FPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRS 192
            FP  GLLPK+ETEA  FLK +P+ DGRGV +AI DTGVDP A+GLQ  +
Sbjct:   12 FPTYGLLPKEETEAASFLKKHPEYDGRGVTIAILDTGVDPGAAGLQTTT 60
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A2B4S9W4_STYPI (Tripeptidyl-peptidase 2 n=2 Tax=Stylophora pistillata TaxID=50429 RepID=A0A2B4S9W4_STYPI)

HSP 1 Score: 67.8 bits (164), Expect = 4.790e-13
Identity = 30/48 (62.50%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:   40 GTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQ 183
            G FP+ GLLPK+ET A  FL   P+ DGRG+ +A+FDTGVDP A GLQ
Sbjct:    7 GDFPIHGLLPKRETGAERFLAKYPEYDGRGIVIAVFDTGVDPGAPGLQ 54
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: UPI0008F99B8A (tripeptidyl-peptidase 2 n=1 Tax=Bemisia tabaci TaxID=7038 RepID=UPI0008F99B8A)

HSP 1 Score: 71.6 bits (174), Expect = 6.830e-13
Identity = 33/49 (67.35%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:   46 FPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRS 192
            FPV GLLPK+ET A+ FL   P+ DGRG  +AIFDTGVDPAA GLQV +
Sbjct:    9 FPVWGLLPKKETGAYAFLNKYPEYDGRGTVIAIFDTGVDPAAPGLQVTT 57
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BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Match: A0A1Y1L211_PHOPY (Uncharacterized protein n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1L211_PHOPY)

HSP 1 Score: 67.0 bits (162), Expect = 9.160e-13
Identity = 31/52 (59.62%), Postives = 37/52 (71.15%), Query Frame = 1 
Query:   37 DGTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFDTGVDPAASGLQVRS 192
            D  FPV GLLPK+ET    FL   P+ DGRG+ +AIFD+GVDP A GLQ+ S
Sbjct:    7 DTEFPVWGLLPKKETGVVTFLNKYPEYDGRGIVIAIFDSGVDPGAPGLQMTS 58
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12268.1902.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMK5_ECTSI5.170e-3195.16Similar to tripeptidylpeptidase II n=2 Tax=Ectocar... [more]
A0A8J1V0F7_OWEFU2.210e-1465.38Tripeptidyl-peptidase 2 n=1 Tax=Owenia fusiformis ... [more]
A0A2E6HFS1_9BACT1.440e-1363.46Tripeptidyl-peptidase II n=1 Tax=Verrucomicrobiale... [more]
A0A1D1UQI9_RAMVA1.690e-1359.62Uncharacterized protein n=1 Tax=Ramazzottius varie... [more]
A0A2E0PE30_9BACT1.960e-1366.00Tripeptidyl-peptidase II n=2 Tax=Verrucomicrobiale... [more]
R4XGH2_TAPDE3.650e-1368.63Tripeptidyl-peptidase II n=1 Tax=Taphrina deforman... [more]
A0A397VPK3_9GLOM3.660e-1365.31Tripeptidyl-peptidase II n=2 Tax=Gigaspora TaxID=4... [more]
A0A2B4S9W4_STYPI4.790e-1362.50Tripeptidyl-peptidase 2 n=2 Tax=Stylophora pistill... [more]
UPI0008F99B8A6.830e-1367.35tripeptidyl-peptidase 2 n=1 Tax=Bemisia tabaci Tax... [more]
A0A1Y1L211_PHOPY9.160e-1359.62Uncharacterized protein n=1 Tax=Photinus pyralis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12268contigEcto-sp13_S_contig12268:4897..5115 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score123.2
Seed ortholog evalue4.9e-26
Seed eggNOG ortholog2880.D8LMK5
Preferred nameTPP2
Model size219
KEGG koko:K01280
Hectar predicted targeting categoryother localisation
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004175,GO:0004177,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005773,GO:0005774,GO:0005829,GO:0005840,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008238,GO:0008240,GO:0009507,GO:0009536,GO:0009987,GO:0010883,GO:0010884,GO:0016020,GO:0016043,GO:0016567,GO:0016604,GO:0016787,GO:0017171,GO:0019538,GO:0022607,GO:0022626,GO:0031090,GO:0031974,GO:0031981,GO:0032446,GO:0032879,GO:0032991,GO:0033218,GO:0036211,GO:0042277,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044437,GO:0044444,GO:0044445,GO:0044446,GO:0044451,GO:0044464,GO:0048518,GO:0050789,GO:0051259,GO:0051260,GO:0065003,GO:0065007,GO:0065008,GO:0070011,GO:0070013,GO:0070647,GO:0071704,GO:0071840,GO:0098588,GO:0098805,GO:0140096,GO:1901564,GO:1905952,GO:1905954,GO:1990904
Exons1
EggNOG free text desc.tripeptidyl-peptidase activity
EggNOG OGsCOG1404@1,KOG1114@2759
EC3.4.14.10
Cds size219
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko03110
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462652.215849-CDS-Ecto-sp13_S_contig12268:4896..51151681462652.215849-CDS-Ecto-sp13_S_contig12268:4896..5115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12268 4897..5115 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12268.1902.1prot_Ecto-sp13_S_contig12268.1902.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12268 4897..5115 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12268.1902.1

>prot_Ecto-sp13_S_contig12268.1902.1 ID=prot_Ecto-sp13_S_contig12268.1902.1|Name=mRNA_Ecto-sp13_S_contig12268.1902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MASTPAASNGGGDGTFPVLGLLPKQETEAWEFLKTNPQLDGRGVKVAIFD
TGVDPAASGLQVRSSAYACASF*
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mRNA from alignment at Ecto-sp13_S_contig12268:4897..5115-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12268.1902.1 ID=mRNA_Ecto-sp13_S_contig12268.1902.1|Name=mRNA_Ecto-sp13_S_contig12268.1902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12268:4897..5115- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGACACCTGCAGCGAGCAACGGTGGTGGTGATGGTACCTTTCC
TGTGCTTGGCCTGCTTCCCAAGCAGGAGACGGAGGCCTGGGAGTTTCTCA
AGACGAACCCGCAGCTCGATGGTAGGGGCGTGAAGGTGGCTATCTTCGAC
ACAGGCGTCGACCCGGCCGCCAGCGGGCTGCAGGTGCGCTCTTCGGCGTA
TGCGTGTGCCTCGTTCTAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12268:4897..5115-

>mRNA_Ecto-sp13_S_contig12268.1902.1 ID=mRNA_Ecto-sp13_S_contig12268.1902.1|Name=mRNA_Ecto-sp13_S_contig12268.1902.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12268:4897..5115- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTCGACACCTGCAGCGAGCAACGGTGGTGGTGATGGTACCTTTCC
TGTGCTTGGCCTGCTTCCCAAGCAGGAGACGGAGGCCTGGGAGTTTCTCA
AGACGAACCCGCAGCTCGATGGTAGGGGCGTGAAGGTGGCTATCTTCGAC
ACAGGCGTCGACCCGGCCGCCAGCGGGCTGCAGGTGCGCTCTTCGGCGTA
TGCGTGTGCCTCGTTCTAG
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