mRNA_Ecto-sp13_S_contig12252.1893.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12252.1893.1
Unique NamemRNA_Ecto-sp13_S_contig12252.1893.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: A0A6H5JA20_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA20_9PHAE)

HSP 1 Score: 793 bits (2048), Expect = 3.100e-280
Identity = 497/561 (88.59%), Postives = 505/561 (90.02%), Query Frame = 1
Query:    1 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDHRQEQXXXXXXXXXXXXXXX--QRVSFTDHLEVSASGGTSTMARSSSIFRXXXXXXXXXXXXXXXXXSCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGMGGEGGSGFPSR----------------------VSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRASGTTXXXXXMTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 1611
            QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTG L EEL P+AAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLD RQE XXXXXXXXXXXXXXX  QRVSFTDHLEVSASGGTSTMARSSSI R         XXXXXXXXSCGRTKPPALTWSAD E+A G RVGGNSGGINPLKSPASGGL SPGTRMLG+GGEGGSGFPSR                      VSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDS       XXXXXXXXXXXELFEAADNLDLGAVDLCATG GADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRR+AVSPRAPSPMHKLTTFG+LPSGFSSSSSRTSPRAS   XXXXX  A+TT+NPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLS+DNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG
Sbjct:  278 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGYLPEELPPKAAGSPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVIGDDCKLSPAIERLVLDPRQEXXXXXXXXXXXXXXXXXXQRVSFTDHLEVSASGGTSTMARSSSIVRSTALTVATGXXXXXXXXSCGRTKPPALTWSADREDACGSRVGGNSGGINPLKSPASGGLSSPGTRMLGIGGEGGSGFPSRKNTHASCLGKTKHPLDFLYARKVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSXXXXXX-XXXXXXXXXXXELFEAADNLDLGAVDLCATGNGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSPRAPSPMHKLTTFGSLPSGFSSSSSRTSPRASA--XXXXXXXASTTSNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSADNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 835          
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGW6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW6_ECTSI)

HSP 1 Score: 580 bits (1494), Expect = 3.400e-203
Identity = 336/382 (87.96%), Postives = 341/382 (89.27%), Query Frame = 1
Query:  466 MARSSSIFRXXXXXXXXXXXXXXXXXSCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGMGGEGGSGFPSRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRASGTTXXXXXMTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG 1611
            MARS++IFR                 SCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLG+GGEGGSGFPSRVSWEE S         AEMHAQHAVSFSGIPDSDD     XXXXXXXXXXX LFEAADNLDLGAVDLCATGKGADGQTTYKDQDE+RLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRR+AVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPR S TT     MTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRR LKSPGVRGFTRGAFFG
Sbjct:    1 MARSTNIFRSTTTTVAKGGGSGS---SCGRTKPPALTWSADGEEAGGRRVGGNSGGINPLKSPASGGLRSPGTRMLGIGGEGGSGFPSRVSWEEGSXXXXXXXXXAEMHAQHAVSFSGIPDSDDXXXXXXXXXXXXXXXXXLFEAADNLDLGAVDLCATGKGADGQTTYKDQDEVRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRMAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSPRTSATTITS--MTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKTKAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSRSQTTPVHRASKTPTVKSSRRTLKSPGVRGFTRGAFFG 377          
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGW7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGW7_ECTSI)

HSP 1 Score: 108 bits (271), Expect = 1.110e-22
Identity = 61/66 (92.42%), Postives = 62/66 (93.94%), Query Frame = 1
Query:    1 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAGSPPSDESKTPEETSSI 198
            QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLP G LSEEL PEAAG PPSDESKTPEETSS+
Sbjct:  237 QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPVGYLSEELPPEAAGFPPSDESKTPEETSSM 302          
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: A0A6H5JCK0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCK0_9PHAE)

HSP 1 Score: 82.0 bits (201), Expect = 6.570e-13
Identity = 63/133 (47.37%), Postives = 76/133 (57.14%), Query Frame = 1
Query:  718 GFPSRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSP 1116
            G  S  SW+  S+ T GT    +   Q   + SG+P+ + D         XXXXXX  FE AD+LDLGAV LCA   GADGQ TY  QD  R P  +     K GVEQ+RFSAALD+FRQEQ+   RR  + P
Sbjct:  236 GNTSVASWDVRSEPTLGTDGGTD---QDIAAASGLPEDESD---------XXXXXXXEFEVADSLDLGAVALCAVQTGADGQQTY--QDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTMGRRPVMPP 354          
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Match: D7FGX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FGX8_ECTSI)

HSP 1 Score: 80.5 bits (197), Expect = 3.050e-12
Identity = 62/130 (47.69%), Postives = 77/130 (59.23%), Query Frame = 1
Query:  727 SRVSWEEESQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDXXXXXXXXXXXELFEAADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERFSAALDFFRQEQQGRPRRVAVSP 1116
            S  SW+  S+ T GT    +   Q   + SG+P+ + +        XXXXXXX  FE AD+LDLGAV LCA   GADGQ TY  QD  R P  +     K GVEQ+RFSAALD+FRQEQ+ + RR  + P
Sbjct:  375 SVASWDVGSEPTLGTDGGTD---QDIAAASGLPEDESE--------XXXXXXXXEFEVADSLDLGAVALCAVETGADGQQTY--QDTARTPQAMRHLTNKLGVEQQRFSAALDYFRQEQRTKGRRPVMPP 491          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12252.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JA20_9PHAE3.100e-28088.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGW6_ECTSI3.400e-20387.96Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FGW7_ECTSI1.110e-2292.42Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JCK0_9PHAE6.570e-1347.37Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FGX8_ECTSI3.050e-1247.69Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12252contigEcto-sp13_S_contig12252:319..4603 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size1686
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_000910.1
Cds size1614
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12252.1893.1prot_Ecto-sp13_S_contig12252.1893.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12252 319..4531 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.5586545-CDS-Ecto-sp13_S_contig12252:318..5151681462651.5586545-CDS-Ecto-sp13_S_contig12252:318..515Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 319..515 +
1681462651.5734882-CDS-Ecto-sp13_S_contig12252:1004..15391681462651.5734882-CDS-Ecto-sp13_S_contig12252:1004..1539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 1005..1539 +
1681462651.5832348-CDS-Ecto-sp13_S_contig12252:1902..21061681462651.5832348-CDS-Ecto-sp13_S_contig12252:1902..2106Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 1903..2106 +
1681462651.5928245-CDS-Ecto-sp13_S_contig12252:2674..27791681462651.5928245-CDS-Ecto-sp13_S_contig12252:2674..2779Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 2675..2779 +
1681462651.6025152-CDS-Ecto-sp13_S_contig12252:3451..35141681462651.6025152-CDS-Ecto-sp13_S_contig12252:3451..3514Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 3452..3514 +
1681462651.6144783-CDS-Ecto-sp13_S_contig12252:3714..40011681462651.6144783-CDS-Ecto-sp13_S_contig12252:3714..4001Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 3715..4001 +
1681462651.6285417-CDS-Ecto-sp13_S_contig12252:4308..45311681462651.6285417-CDS-Ecto-sp13_S_contig12252:4308..4531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12252 4309..4531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.6410549-UTR-Ecto-sp13_S_contig12252:4531..46031681462651.6410549-UTR-Ecto-sp13_S_contig12252:4531..4603Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12252 4532..4603 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12252.1893.1

>prot_Ecto-sp13_S_contig12252.1893.1 ID=prot_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=538bp
QTLKKLKGKQEEGKKREISRLLSKLDDNASIDQHLPTGCLSEELQPEAAG
SPPSDESKTPEETSSITVSGGVQQQGMKRERDSCSSEESELSSLPAPVVI
GDDCKLSPAIERLVLDHRQEQQQQQHQQQQHQHRQQQRVSFTDHLEVSAS
GGTSTMARSSSIFRSTTTTVAKGGGGGSSGGSCGRTKPPALTWSADGEEA
GGRRVGGNSGGINPLKSPASGGLRSPGTRMLGMGGEGGSGFPSRVSWEEE
SQGTAGTMDTAEMHAQHAVSFSGIPDSDDDGGHDGDGDDDDDDDDELFEA
ADNLDLGAVDLCATGKGADGQTTYKDQDELRLPAKVAGPPQKKGVEQERF
SAALDFFRQEQQGRPRRVAVSPRAPSPMHKLTTFGTLPSGFSSSSSRTSP
RASGTTSTSTSMTAATTTNPFALKPGVSSGVRLRTPSSRSRAEVRSAVKT
KAKTVTRRRMSAERDAGTARDRLLSSDNTAYGRGKTPLARSMSVYIPSSR
SQTTPVHRASKTPTVKSSRRALKSPGVRGFTRGAFFG*
back to top

mRNA from alignment at Ecto-sp13_S_contig12252:319..4603+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12252.1893.1 ID=mRNA_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4285bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12252:319..4603+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACCCTCAAGAAGCTCAAGGGCAAGCAGGAAGAGGGCAAGAAGAGGGA GATCTCACGCCTACTGTCCAAGCTGGACGACAACGCCAGCATTGATCAGC ACCTCCCGACGGGATGCTTGTCCGAGGAATTGCAACCGGAAGCGGCTGGT TCTCCTCCTTCGGACGAGTCCAAAACGCCAGAAGAAACGTCTAGCATGTG AGGCCGGCGCATGTTTATGGGGACACTTCTATCTCTTGATCAAATCACCC CACACACAGTTCGTTTGTACCCGAAACAGATCCGTGAGTGCAGATGACAG CGCCGAAGGTTTGTGAGAGTCTGACATTTTTCAATCACTAGCGCGTGCGC CGGTTCTTTATTTCCCAGATCTACCCGTCCGAAGCTGAAGCGCAAGCGCC GTATTGGTACAGCTTCCTTCCCAGAGTGGGCAATCAAAGTGAAACCCACG ATGAGCTCGAGAGCCTGTGTTGCTACTTTTTTTTTTGTGTGATTGAACTC ATTCCTTCCCCTCGTACCTCGTAGAAATGTAATCAAACACGCGTGATTGA CTCTGTGTCGGTTCGAAACTGCGAGAGGCATTGCTGTATCGAACATCTCA CGGCTCTGGCAAGTAGAAGTAAACCGTAATTTTCAACGCCGTCAAAGGCT CAACGATATCGATCCCTTTGTTGGTACACGTGGCAGCACCGTTTCGGGCG GAGTTCAGCAGCAGGGCATGAAGCGAGAGCGAGACAGCTGCTCCTCGGAA GAGTCTGAGCTATCGTCGTTGCCCGCGCCGGTGGTGATCGGGGACGACTG CAAGCTGTCCCCGGCGATCGAACGCCTCGTGCTGGACCACCGTCAAGAGC AGCAGCAGCAGCAGCACCAGCAGCAGCAGCACCAGCACCGCCAGCAGCAG CGGGTGTCGTTCACAGACCACTTGGAGGTTTCTGCCTCCGGTGGCACGAG CACCATGGCTAGGAGTAGCAGCATTTTCAGGAGCACGACCACGACGGTAG CCAAGGGTGGAGGCGGCGGCAGCAGCGGCGGTAGCTGCGGTAGAACGAAA CCGCCCGCCCTGACTTGGTCCGCGGATGGCGAAGAGGCCGGCGGAAGGCG TGTCGGAGGGAACAGTGGCGGCATTAACCCTCTCAAGTCCCCCGCGAGCG GCGGCCTGCGGTCTCCAGGAACGCGCATGCTAGGGATGGGGGGCGAAGGT GGTTCCGGCTTTCCTAGCAGGGTAAGGGTAAACACTGTTGTTGTTGGCAC AAGCAGTAAGTTGCATTGTTCTTGTCGTGGTGGTGTTTTTGGTGGGTGCT TGTTTTGTGGGAGGGAGGTGCTGCTTGTTGCTCGTGTCGTTGCCATGTCG GTCCTCAGTGGCGCGATTGGCTTTGTGAAATGTGTTCGAATTTATTTTTT ACGGGAGGTGCTGCTACATATGTCCTTGCCGTGGCCGACCTCGATTGCGC GTGCTCCCCGTACTCGAGAGGGAGGCCCGTTGCCCAAAGTCATGCATCCA CAAACCTTGCTGCTGCAGAAAAACACACACGCCTCTTTTTTTGGAAAAGC CAAACACCCTCTTGATTTTTTCTACGTACGCAAGGTGAGCTGGGAGGAGG AGAGCCAGGGTACGGCAGGCACCATGGACACAGCGGAGATGCACGCGCAA CACGCAGTGTCGTTCTCAGGCATCCCAGACAGCGACGATGACGGTGGACA CGACGGCGACGGGGATGATGATGACGACGACGACGATGAGCTCTTCGAGG CAGCTGACAACTTGGACCTCGGGGCCGTGGACCTTTGCGTGAGTGTTGGT TTCCTGTAGTTGTTTCCCTGAAGAAGAGTTTCGACATATGTATCTCAACA CAGCAGGGATTGCGTGAGTGTTAGTGTTTCCAATAGTCCTTTCCCTGGCT TTTTTTTCGTCATACAAACATGAACACAGCAGGGATTACGTGATTGTTTC CATTGTTTAGTCCTTTCCCTGAAAAAGAGTTTCGTCGAATATGTCCACCA CAGGAACTACGTGAGTATTGCCATTGTCGAGTTCTTTCCCTGAAAAAGAG TATCGCCATGTATGTCCACAGCAGGGTTTACGTGAGTGTTTCCATTGTCC AGTCATTTCCCCGAGAAATAATTTCGCCATGTATGTAAACAGCGGGGATA TAAGTTTCGTTTCGCATTTATCACCGCCAACGCACGTGACGTTTGCGTCC TTGTTGGGCATCTGTTAGCCCTTGCCCCGAACAAGAGTTTCGTCATACAA TTCATGCGTGCAGCAGGGATTTAACGTTGGTTTGGCATTGATTGTCGCCT ACGCACGTGATGCCTGCGTTCTTGTTGGGCGTATGCTGTTTGCGAATAAA TCGCAGGCAACAGGCAAGGGAGCTGATGGACAAACCACCTACAAGGATCA AGACGAGCTGCGGCTGCCTGCTAAAGTGGCCGGCCCTCCGCAGAAGAAGG GCGTGGAACAGGTGCACTCGCGACCCACCAAAGATAAAGAGAGGCGTTTT TGGAACAGTAGTACCACAGGGGTGGAAAAAAGTGGGATTGTTTACGTAAT CCCAAACCGTCGCGGTGTATGCAGCATAGGCACGAGGTGGTCACCCAGAA TTGACCCGAAATGGTCGGTTTGATGCGCGTGTCACGACAAACTGATAGTC TCAAGAGTTCACAGTTTTTCCAACCCTTGGGCGTTTTTTTTTGTGCGAAG TAGTCCACGCTGCCTTGTCTTGTCTGGCTGGGTTGGCCGCTGTACTGCAC CGACAAAGAGTCGGCCTTTGCGTCAATCGCCATGATGCTGCGGTGTACGC AATCCACGTATCCAGGTTGTGCGTTTGCGCCGCTCCGCTGATGTGGACGT TGATTTTCACACCTGTTGGGGCATTTTTTTGGACGCACTAGCCGGCGTTA CTCACACAGTAGGGAGAATAACCACTCACGTGCTATACTGACATTGGAGG TGTCACGTACTGGAGGGAAAACAAACGCGGACCCCACACACTTGTTTCCC ACCCTCAGCTCTCGCGTGGCTTCCCTCCTCATGTCCGGGTTATTAGCAGT CATTCGGTTTCGTGCCACTTCTTACTTTGTCTTTTATTCCCTTTTAAACG TTTTACATTATTTTCTGTCATTTTCCGATGCAGGAACGCTTTTCGGCAGC GCTAGACTTCTTTCGGCAGGAGCAGCAGGGCAGGCCCAGGCGTGTGGTGA GTAGCTGACGACTAATCCTAAACCTGTCCTAATTTCGTTTGTGCGTGTAC CCTTGCTCTTACTACTTTCACTGACTGCTTCGCAGGTGCTTGAGAGGAAT GTCCTTCCCGTGTCTACCACATGGCTGTGTCATGCCCCCCCCTTCCCCTC TCCTTCCCACGCCTTCTCTTCTGTTGGCGCTCTTCTCCTTGTGCAGGCTG TCTCCCCACGCGCCCCCTCTCCGATGCACAAACTGACCACTTTCGGCACG CTGCCGAGTGGCTTTTCTTCGTCGTCTTCGCGGACAAGTCCAAGGGCCAG TGGCACCACTAGCACTAGCACTAGCATGACCGCCGCCACGACCACCAACC CCTTCGCCTTGAAGCCTGGGGTTTCGAGTGGGGTGAGACTGAGGACGCCT TCGTCTCGATCTAGGGCGGAAGTCAGGAGCGCTGTCAAGACCAAGGCCAA GACGGTTACGAGGAGGAGGATGTCCGCTGAGAGGTGAGAACCACAGAGAG AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAACGGCAACAACCGGCTGAA CATTCGCGTCCTACACAGGAGGACTACTTGTATGTCGTCATTTTTTAGCC CTGGGAGTATTGCGTTATGGAGGAATGTTTCATGGTCTGTGCTGCTCTGT AGGTGTGCGGTAGGATCTGCTGCACTTGGAGTGTACCTGCGCGAGCCGCG GCACGAACCCAAGGTTGTCCCCCCCCCGTATACTACCACTATCAAGGCTA ACGTTTCCGTAACATTTTTGTCGTGTCGGCGTTAACGCAGGGACGCGGGG ACCGCCAGGGACAGGCTGCTCTCCTCCGATAACACCGCCTATGGTCGGGG CAAGACACCCCTCGCCAGGAGCATGTCGGTGTACATCCCCAGTTCCCGGA GCCAGACAACGCCTGTCCACAGAGCGTCCAAAACCCCGACTGTGAAATCC TCCCGGCGCGCCTTGAAGTCCCCGGGGGTCAGGGGTTTCACCCGAGGCGC GTTCTTCGGCTGACCGATCGATTTGATCGGCCAGCGTTGTTCTTGCTCCC TGTCCGTGCGTGCTGACCGATGGAGTTGATTGGCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12252:319..4603+

>mRNA_Ecto-sp13_S_contig12252.1893.1 ID=mRNA_Ecto-sp13_S_contig12252.1893.1|Name=mRNA_Ecto-sp13_S_contig12252.1893.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1614bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12252:319..4603+ (Ectocarpus species13 EcNAP12_S_4_19m)
CAGACCCTCAAGAAGCTCAAGGGCAAGCAGGAAGAGGGCAAGAAGAGGGA
GATCTCACGCCTACTGTCCAAGCTGGACGACAACGCCAGCATTGATCAGC
ACCTCCCGACGGGATGCTTGTCCGAGGAATTGCAACCGGAAGCGGCTGGT
TCTCCTCCTTCGGACGAGTCCAAAACGCCAGAAGAAACGTCTAGCATCAC
CGTTTCGGGCGGAGTTCAGCAGCAGGGCATGAAGCGAGAGCGAGACAGCT
GCTCCTCGGAAGAGTCTGAGCTATCGTCGTTGCCCGCGCCGGTGGTGATC
GGGGACGACTGCAAGCTGTCCCCGGCGATCGAACGCCTCGTGCTGGACCA
CCGTCAAGAGCAGCAGCAGCAGCAGCACCAGCAGCAGCAGCACCAGCACC
GCCAGCAGCAGCGGGTGTCGTTCACAGACCACTTGGAGGTTTCTGCCTCC
GGTGGCACGAGCACCATGGCTAGGAGTAGCAGCATTTTCAGGAGCACGAC
CACGACGGTAGCCAAGGGTGGAGGCGGCGGCAGCAGCGGCGGTAGCTGCG
GTAGAACGAAACCGCCCGCCCTGACTTGGTCCGCGGATGGCGAAGAGGCC
GGCGGAAGGCGTGTCGGAGGGAACAGTGGCGGCATTAACCCTCTCAAGTC
CCCCGCGAGCGGCGGCCTGCGGTCTCCAGGAACGCGCATGCTAGGGATGG
GGGGCGAAGGTGGTTCCGGCTTTCCTAGCAGGGTGAGCTGGGAGGAGGAG
AGCCAGGGTACGGCAGGCACCATGGACACAGCGGAGATGCACGCGCAACA
CGCAGTGTCGTTCTCAGGCATCCCAGACAGCGACGATGACGGTGGACACG
ACGGCGACGGGGATGATGATGACGACGACGACGATGAGCTCTTCGAGGCA
GCTGACAACTTGGACCTCGGGGCCGTGGACCTTTGCGCAACAGGCAAGGG
AGCTGATGGACAAACCACCTACAAGGATCAAGACGAGCTGCGGCTGCCTG
CTAAAGTGGCCGGCCCTCCGCAGAAGAAGGGCGTGGAACAGGAACGCTTT
TCGGCAGCGCTAGACTTCTTTCGGCAGGAGCAGCAGGGCAGGCCCAGGCG
TGTGGCTGTCTCCCCACGCGCCCCCTCTCCGATGCACAAACTGACCACTT
TCGGCACGCTGCCGAGTGGCTTTTCTTCGTCGTCTTCGCGGACAAGTCCA
AGGGCCAGTGGCACCACTAGCACTAGCACTAGCATGACCGCCGCCACGAC
CACCAACCCCTTCGCCTTGAAGCCTGGGGTTTCGAGTGGGGTGAGACTGA
GGACGCCTTCGTCTCGATCTAGGGCGGAAGTCAGGAGCGCTGTCAAGACC
AAGGCCAAGACGGTTACGAGGAGGAGGATGTCCGCTGAGAGGGACGCGGG
GACCGCCAGGGACAGGCTGCTCTCCTCCGATAACACCGCCTATGGTCGGG
GCAAGACACCCCTCGCCAGGAGCATGTCGGTGTACATCCCCAGTTCCCGG
AGCCAGACAACGCCTGTCCACAGAGCGTCCAAAACCCCGACTGTGAAATC
CTCCCGGCGCGCCTTGAAGTCCCCGGGGGTCAGGGGTTTCACCCGAGGCG
CGTTCTTCGGCTGA
back to top