mRNA_Ecto-sp13_S_contig1224.1885.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1224.1885.1
Unique NamemRNA_Ecto-sp13_S_contig1224.1885.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: D8LPX5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LPX5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 1.380e-21
Identity = 42/45 (93.33%), Postives = 44/45 (97.78%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVVYGTRKAGAPAV 135
            AGGQVLQHAGGKAGEPGEDVRYNKE+PLNPFFVVYG+RKA APAV
Sbjct:  212 AGGQVLQHAGGKAGEPGEDVRYNKEDPLNPFFVVYGSRKAAAPAV 256
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: F0XWS2_AURAN (Uncharacterized protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XWS2_AURAN)

HSP 1 Score: 56.2 bits (134), Expect = 4.580e-8
Identity = 26/34 (76.47%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVV 102
            AGG+VLQHAGGK  EPG+ V YNK E LNPFFVV
Sbjct:  235 AGGEVLQHAGGKDCEPGKPVAYNKPEALNPFFVV 268
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: A0A0G4F0W4_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4F0W4_VITBC)

HSP 1 Score: 54.7 bits (130), Expect = 1.610e-7
Identity = 25/38 (65.79%), Postives = 30/38 (78.95%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVVYGTR 114
            AGG+V+Q AGG   E GE +RYNKE+ LNPFFVVYG +
Sbjct:  221 AGGRVVQAAGGAPCEEGEALRYNKEDQLNPFFVVYGNQ 258
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: A0A0G4ENA2_VITBC (Uncharacterized protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ENA2_VITBC)

HSP 1 Score: 54.3 bits (129), Expect = 2.720e-7
Identity = 25/38 (65.79%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVVYGTR 114
            AGG+V+Q  GG   E GE VRYNKE  LNPFFVVYG +
Sbjct:  373 AGGRVVQATGGSPCEEGEPVRYNKENTLNPFFVVYGNQ 410
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: A0A7S4JHE9_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4JHE9_9EUKA)

HSP 1 Score: 52.4 bits (124), Expect = 1.170e-6
Identity = 25/41 (60.98%), Postives = 32/41 (78.05%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGE--PGEDVRYNKEEPLNPFFVVYGTRK 117
            AGG+++QHAGGKA +  PGE + YNK +  NPFFVVYG R+
Sbjct:  234 AGGEIVQHAGGKAKQCSPGEPLVYNKLDLENPFFVVYGRRQ 274
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BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Match: A0A7S2USH2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USH2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.150e-5
Identity = 24/42 (57.14%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    1 AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVVYGTRKAGA 126
            AGG+VLQ+ GGK  +  + + YNK + LNP+FVVYG RKA A
Sbjct:  237 AGGEVLQYQGGKDCDHLKPLVYNKPDVLNPWFVVYGKRKAAA 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1224.1885.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LPX5_ECTSI1.380e-2193.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
F0XWS2_AURAN4.580e-876.47Uncharacterized protein (Fragment) n=1 Tax=Aureoco... [more]
A0A0G4F0W4_VITBC1.610e-765.79Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A0G4ENA2_VITBC2.720e-765.79Uncharacterized protein n=3 Tax=Vitrella brassicaf... [more]
A0A7S4JHE9_9EUKA1.170e-660.98Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A7S2USH2_9STRA1.150e-557.14Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1224contigEcto-sp13_S_contig1224:18147..18284 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score92.0
Seed ortholog evalue7.6e-17
Seed eggNOG ortholog2880.D8LPX5
Preferred nameMET22
Model size138
KEGG rclassRC00078
KEGG koko:K01082,ko:K08150,ko:K21398
KEGG TC2.A.1.1.25,2.A.1.1.62,2.A.1.1.63,2.A.1.1.66,2.A.1.8,2.A.55.2.1,2.A.55.2.2
KEGG ReactionR00188,R00508
KEGG Pathwayko00920,ko01100,ko01120,ko01130,ko04142,ko04216,ko04978,map00920,map01100,map01120,map01130,map04142,map04216,map04978
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000096,GO:0000097,GO:0000103,GO:0003674,GO:0003824,GO:0004441,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006555,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0006950,GO:0006970,GO:0006972,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008252,GO:0008441,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009086,GO:0009507,GO:0009536,GO:0009628,GO:0009651,GO:0009987,GO:0016053,GO:0016311,GO:0016312,GO:0016787,GO:0016788,GO:0016791,GO:0019752,GO:0023052,GO:0035556,GO:0042538,GO:0042578,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046030,GO:0046394,GO:0048015,GO:0048017,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0052745,GO:0052829,GO:0065007,GO:0071704,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
Exons1
EggNOG free text desc.3'(2'),5'-bisphosphate nucleotidase activity
EggNOG OGsCOG1218@1,KOG1528@2759
EC3.1.3.7
Cds size138
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko02000,ko03016
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462651.110051-CDS-Ecto-sp13_S_contig1224:18146..182841681462651.110051-CDS-Ecto-sp13_S_contig1224:18146..18284Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1224 18147..18284 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1224.1885.1prot_Ecto-sp13_S_contig1224.1885.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1224 18147..18284 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1224.1885.1

>prot_Ecto-sp13_S_contig1224.1885.1 ID=prot_Ecto-sp13_S_contig1224.1885.1|Name=mRNA_Ecto-sp13_S_contig1224.1885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
AGGQVLQHAGGKAGEPGEDVRYNKEEPLNPFFVVYGTRKAGAPAV*
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mRNA from alignment at Ecto-sp13_S_contig1224:18147..18284-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1224.1885.1 ID=mRNA_Ecto-sp13_S_contig1224.1885.1|Name=mRNA_Ecto-sp13_S_contig1224.1885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1224:18147..18284- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCGGGCAAGTGTTGCAACATGCGGGAGGCAAGGCGGGAGAGCCCGG
AGAGGACGTGCGGTACAACAAGGAGGAACCTCTAAACCCGTTCTTCGTTG
TCTACGGCACCCGAAAAGCAGGGGCGCCCGCAGTGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1224:18147..18284-

>mRNA_Ecto-sp13_S_contig1224.1885.1 ID=mRNA_Ecto-sp13_S_contig1224.1885.1|Name=mRNA_Ecto-sp13_S_contig1224.1885.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1224:18147..18284- (Ectocarpus species13 EcNAP12_S_4_19m)
GCCGGCGGGCAAGTGTTGCAACATGCGGGAGGCAAGGCGGGAGAGCCCGG
AGAGGACGTGCGGTACAACAAGGAGGAACCTCTAAACCCGTTCTTCGTTG
TCTACGGCACCCGAAAAGCAGGGGCGCCCGCAGTGTAA
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