mRNA_Ecto-sp13_S_contig1224.1883.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1224.1883.1
Unique NamemRNA_Ecto-sp13_S_contig1224.1883.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1224.1883.1 vs. uniprot
Match: D8LPX8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPX8_ECTSI)

HSP 1 Score: 238 bits (606), Expect = 5.500e-79
Identity = 122/127 (96.06%), Postives = 124/127 (97.64%), Query Frame = 1 
Query:    1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPIVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRQQRGHRHRH 381
            MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHP+VPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPR+LYRELQDCVTQDAMLLSPLPRRRQQ GH H H
Sbjct:    1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRYLYRELQDCVTQDAMLLSPLPRRRQQHGHHHLH 127
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BLAST of mRNA_Ecto-sp13_S_contig1224.1883.1 vs. uniprot
Match: A0A6H5KJF2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJF2_9PHAE)

HSP 1 Score: 193 bits (490), Expect = 3.450e-55
Identity = 102/127 (80.31%), Postives = 104/127 (81.89%), Query Frame = 1 
Query:    1 MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRHPIVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRQQRGHRHRH 381
            MKNRVMHLEAALVRSELDLCR                   +AATDRRDRHP+VPGDIPALYHALEGSVVLLQIASEKML LEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRQQ GH H H
Sbjct:  631 MKNRVMHLEAALVRSELDLCRXXXXXXXXXXXXXXXXXXXEAATDRRDRHPVVPGDIPALYHALEGSVVLLQIASEKMLCLEHTIAKHREAMPRHLYRELQDCVTQDAMLLSPLPRRRQQHGHYHVH 757
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1224.1883.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPX8_ECTSI5.500e-7996.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJF2_9PHAE3.450e-5580.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1224contigEcto-sp13_S_contig1224:1152..3898 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size399
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001750.1
Cds size399
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462650.9243398-CDS-Ecto-sp13_S_contig1224:1151..13341681462650.9243398-CDS-Ecto-sp13_S_contig1224:1151..1334Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1224 1152..1334 -
1681462650.9383547-CDS-Ecto-sp13_S_contig1224:2431..25271681462650.9383547-CDS-Ecto-sp13_S_contig1224:2431..2527Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1224 2432..2527 -
1681462650.9559643-CDS-Ecto-sp13_S_contig1224:3778..38981681462650.9559643-CDS-Ecto-sp13_S_contig1224:3778..3898Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1224 3779..3898 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1224.1883.1prot_Ecto-sp13_S_contig1224.1883.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1224 1152..3898 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1224.1883.1

>prot_Ecto-sp13_S_contig1224.1883.1 ID=prot_Ecto-sp13_S_contig1224.1883.1|Name=mRNA_Ecto-sp13_S_contig1224.1883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=133bp
MKNRVMHLEAALVRSELDLCRARTELEANRREAEALSQAKDAATDRRDRH
PIVPGDIPALYHALEGSVVLLQIASEKMLRLEHTIAKHREAMPRHLYREL
QDCVTQDAMLLSPLPRRRQQRGHRHRHLHPQR*
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mRNA from alignment at Ecto-sp13_S_contig1224:1152..3898-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1224.1883.1 ID=mRNA_Ecto-sp13_S_contig1224.1883.1|Name=mRNA_Ecto-sp13_S_contig1224.1883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2747bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1224:1152..3898- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAATCGGGTGATGCACCTAGAGGCGGCCCTGGTGAGGTCGGAGCT
GGACCTGTGCCGGGCGAGGACCGAGCTCGAGGCGAACCGGCGGGAGGCGG
AGGCCCTCAGCCAAGCTAAGGTGTGTGTGTGTGCGTGTGTGTGTTTGCAT
TTTGCTTCAACAGCGCTAACCGGCTGACCAATAAAAGACGTCAGGCTCAA
GTGCGGGTGAAAACACGAAGTGTTTTTAAGGGGTGCGTGTGTGTTTGTGT
TTTCTCATGTAGCATCGACCGCGCTAACCGGCTGACCATTGACGTTATAA
AGACGTCAGTGACAGTGCGGTTGAAGACACAAAATGCCTCCCAAAGGCCA
TGATCTGGGCGCCATGGTGTGTGTGTTCGCTTACTTATTCAACATCGACC
GCGCTAACCGACTGACCAATGAAAAGACAAGGCTGCCGTCTTGTAGCGGG
ATGACACATACGAACAGGTCCTAATCAAAGGGCATTGTATTTGTCTGTGT
AGTTTGTAGCTTGCATTTACGGCGCCTGTTGGCTCAACCGATGAAAAAAC
GTCAGCCTTGGTTCCGGTGACAAGAGAAATGTGTTTGACTTGTGTGTTGC
GCCGGTTGCATCCAATGGTGAACGAACCTCACCCATAAGCTTGGGGCCTA
GACAGGTATACGCCTCTTGAGATGATGATCAACATTGCGCTCCGGTGAGG
GGGGGGTCACGGATGAGGTTAGACTACTGTTTTTCTCCGGGATCGAAGAC
TAGGACTGCTGTGTTGTTGTTGTTGTTGTTTCCCACATGAGCTCTGTAGT
CCACATAAATGGGGAGCCCGTGTTCTCAAAACCCGGCACATACGACGCCG
CGGGGAAACAACAACAAATATAGGGTACAAACCACTCGGAAAAAGAAAAC
AAATTGATAGAAAGAGATAACAGCTACCGCACTGACCGGTCGAGAAAAGG
GCTCTCGGAAACCGCTCTGTATGTGTGTGCGTCTCTGTGCCTCGCAGTAC
CGACTGCGCCTACCAGCTGGCCGGGCGTTGGTGAAATGCCGTGCTCAGCA
TGACACCCGGCAGATGCATTACCTTCTAGTGGACACATGGGTCTGTGGTG
TTTGCTTTTGGCTACTGCGGACGGTATTGTCGACCGCGCCAACGTGGTGC
TTTGGGCGACGACGTCTGGTCCCCGTTGGACACCAGACAGCCCTTTTTCG
GGGCGTTATTTTATTCGGGCCCGATCCCCACCAAAGCCTCAGGGTTGCTA
GGCTTGTGCGATCATTTGCATTGATTCCACGCATCCTCGGCCCTTGAGTA
TCCCACACGCCTCTCCTCCGCCTTTTTTTTGTTGCGTTTCTCTGTCGTCC
ACGTTTTTTTTTGTGGTGAAGGACGCTGCGACCGATCGACGAGACCGCCA
CCCTATCGTGCCTGGCGACATCCCGGCTCTTTACCACGCCCTGGAAGGGT
CAGTCGTCCTCTTGCAGGTGACTGGCTCGTCTCGCCCCGCTTCGCTTCCC
AGCGGGGTGTCTGCTGTATGTGTTGCCAAAAACCAAATGTTGTTGCTTCC
AACAGGGTGTTCACTGCCGGATATCTTTTCTCAATAAAAATATGTTGTTC
CTTTCAACGTGGTATCTACCCGTCTGCCTTCAAACCCAAAATATTGTTAC
TTCCAACAGGGCATCTGTATGTCCTCCCAAGCATCAGTTGTTTTCTTGAT
TTCAAATGTATGTCTTCTTAAGAATCAGTTGCCGTTGCTTCCATCAGGGT
ATGTATCTACATCTCTTCCCAATACCCAAATGATGTTGCTTCTTTCAAGG
TAACTACATGGCATCCTACAAACCAAATACTTTGTTGGATGTCTACATAC
CTTCCTGCAAAGCAAGTGTGGTTTCATCCAACATGGAGTCTTTGGTGTGT
CCGCAAGAACCAAGAGTTTGCTGTTGCTGTTGCTGTGATTTATGGTGGTG
GTTGTGGTGTTGGGTGACGGCGACGGCAGTTGCGGGTTCTGAGGTAAAAT
GGTCCCGTGTAAGACTTTTGTTCGGGTCGTCACCGCCTGAAGTCCGAGGC
AGAGGTAGAGCGGGAATTGATCGGGCCGGGTCGGACACACGGGTATTCGA
TACACCTGGCCTTCAAGCCAAGCGCACGCCGGCGGGCAGCGTTTGCCGTC
TTCTCCCCGAACAAGTTGCTGCTCTAGCAGGTGCTAGAGGCCAAAAAAAT
CGTGGCACTGCCATGAAACAATTTTGACGCAATTTCTCTCTCCGTGTCCA
TCGCAAGGCTCGAGGAGCCATCGTCGTACCACCGATTCAAGTTCTCAAGT
CCCTTACGCCTTGTGCCTCGGTGGACTACCGTACTACGCATTACGCATTT
CACCAGCTACGGTTTTTTCTTTTCTCTCTCTCGTTTTCCTGAGCTACGTA
TGTAGTACCCCAGCCGCTCCTATGCGGAAGGTAGGGCCTTCATCTGGTGC
CGTTTTTGGCTATTGAGTCTTTTCTGCAGTTCGGTTCGTCCAACTGGAAG
CAACTTTCCACGCGACTGGTGAGTGATTGACCGCCTCGGCTTACCTTCCC
TTTGTTTGAACCAGATTGCCTCGGAGAAGATGCTTCGGTTGGAGCACACC
ATCGCCAAGCACCGGGAGGCGATGCCGAGGCACCTCTACAGGGAGCTGCA
GGACTGCGTTACTCAGGACGCGATGCTGCTGTCCCCTCTCCCGCGCCGTC
GCCAGCAGCGCGGCCACCGCCACCGCCACCTCCACCCCCAGCGTTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1224:1152..3898-

>mRNA_Ecto-sp13_S_contig1224.1883.1 ID=mRNA_Ecto-sp13_S_contig1224.1883.1|Name=mRNA_Ecto-sp13_S_contig1224.1883.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=399bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1224:1152..3898- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGAATCGGGTGATGCACCTAGAGGCGGCCCTGGTGAGGTCGGAGCT
GGACCTGTGCCGGGCGAGGACCGAGCTCGAGGCGAACCGGCGGGAGGCGG
AGGCCCTCAGCCAAGCTAAGGACGCTGCGACCGATCGACGAGACCGCCAC
CCTATCGTGCCTGGCGACATCCCGGCTCTTTACCACGCCCTGGAAGGGTC
AGTCGTCCTCTTGCAGATTGCCTCGGAGAAGATGCTTCGGTTGGAGCACA
CCATCGCCAAGCACCGGGAGGCGATGCCGAGGCACCTCTACAGGGAGCTG
CAGGACTGCGTTACTCAGGACGCGATGCTGCTGTCCCCTCTCCCGCGCCG
TCGCCAGCAGCGCGGCCACCGCCACCGCCACCTCCACCCCCAGCGTTAA
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