mRNA_Ecto-sp13_S_contig12220.1873.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Match: D8LDY4_ECTSI (Kinesin motor domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDY4_ECTSI) HSP 1 Score: 422 bits (1086), Expect = 5.000e-131 Identity = 267/357 (74.79%), Postives = 271/357 (75.91%), Query Frame = 1
Query: 1 DPEATGGAAGLGLSPDAQAEEVLGRDEVKDYLKVVKARVADLVRKRQTAGVPLLLGPGFNTTDPDGSSSAAGXXXXXXXXXXXXXAAVGFRNSNATRRVLADSGGKEGDGGVRSGGVTDDSGGGVGSLEGEELEHDPEEELAVLDQLIEWQRQTGEYGDAAKEEEKRLEETDCQIREKESMLLKVRETITGYHHMRERFDMLVGKIGDLEQEKLALLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGHLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQKAATARKTSQ 1071
DPEATGGAAGLGLSPDAQAEEVLGR+EVK+YLKVVKARVADLVRKRQTAGVPLLLG GGK GDGGVRSGG T+D+GGGVG LEGEELEHDPEEELAVLDQLIEWQRQTGEYGDAAK ERFDMLVGKIGDLEQEKL LLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLG LKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQKAATARKTSQ
Sbjct: 409 DPEATGGAAGLGLSPDAQAEEVLGREEVKNYLKVVKARVADLVRKRQTAGVPLLLG-----------------------------------------------GGKGGDGGVRSGGGTEDAGGGVGPLEGEELEHDPEEELAVLDQLIEWQRQTGEYGDAAK----------------------------------ERFDMLVGKIGDLEQEKLTLLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGQLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQKAATARKTSQ 684
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Match: A0A7S2PLE1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PLE1_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.290e-22 Identity = 69/225 (30.67%), Postives = 142/225 (63.11%), Query Frame = 1
Query: 388 GEELEHDPEEELAVLDQLIEWQRQTGEYGDAAKEEEKRLEETDCQIREKESMLLKVRETITGYHHMRERFDMLVGKIGDLEQEKLALLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGHLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQKAATARK 1062
G+ E +P+E++A+LDQL+E Q Q E+ A K ++ L + ++ E+E++LL++RE++ YH M+E++++L+ ++ LE+EK L +++AT +G + +++++L+ VE+ L+ ++ ++ + ++EA+KC L+ + HLK+ K L ++Q+EAA +H+E+ + +REIQA+++K+ K+ + ++K+E E R+ KA+ R+
Sbjct: 551 GDTFEVNPDEDMAILDQLLELQNQDQEFDRAQKHGQEELRIVEGELEEQEALLLQLRESLKVYHSMKEKYELLMTEVQGLEKEKADLAIQLEHATVD--------------PTKGCSVSIKKKLEKVEASLSRARSETRRHQEMYRKAEQEAQKCRSLENKIYHLKQGKAALVRKQKEAAAKHKEFTEAKAREIQALKRKDRKNGKQVTKLEAECRQYKASLERR 761
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Match: A0A7S4J1K6_9STRA (Hypothetical protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J1K6_9STRA) HSP 1 Score: 107 bits (268), Expect = 8.020e-22 Identity = 67/216 (31.02%), Postives = 138/216 (63.89%), Query Frame = 1
Query: 397 LEHDPEEELAVLDQLIEWQRQTGEYGDAAKEEEKRLEETDCQIREKESMLLKVRETITGYHHMRERFDMLVGKIGDLEQEKLALLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGHLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQK 1044
+E +P+E++A+LDQL+E Q Q E+ A KE++ +LE+ + ++ E+E +LL+++E++ YH+++ ++++L+G++ LE EK +L + A +G + A++++++ VE+ LA ++ +K ++ ++EA+KC+ L+ + LK+ +V L K+Q+EA+ +H+E+ + +REIQA+++K K + +SK+E E R+ K
Sbjct: 426 MEVNPDEDMAILDQLLELQSQDHEFDKAEKEDQAQLEKVEGELEEQEGLLLQLKESLKVYHNLKAKYEVLMGEVQSLEAEKASLAAELDKAQID--------------PTKGCSVAIKKKMEKVEASLARARSETRKHQQMYRKAEQEAQKCKTLENRVKELKQGRVNLIKKQREASTKHKEFTEAKTREIQALKRKERKAGKQVSKLEAECRKYK 627
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Match: A0A7S2QVI8_9STRA (Hypothetical protein n=1 Tax=Triparma pacifica TaxID=91992 RepID=A0A7S2QVI8_9STRA) HSP 1 Score: 97.4 bits (241), Expect = 2.510e-18 Identity = 70/231 (30.30%), Postives = 127/231 (54.98%), Query Frame = 1
Query: 376 GSLEGEELEHDPEEELAVLDQLIEWQRQTGEYGDAAKEEEKRLEETDCQIREKESMLLKVRETITGYHHMRERFDMLVGKIGDLEQEKLALLETMKNATTPNGSAKESSRGXXXXXXRGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGHLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQKAATARKTS 1068
G L+ + P+E++A+LDQL+E Q+ +Y + E + E D ++ E+E +L K+R ++ YH M+ +++ L+ ++ LEQEK L E + RG ++A++ +L VE LA ++ +KQ++ +REA+K ++ + LK +V L K+Q+E RHR + + +REIQ ++KK K ++++K+E E ++ K A R+TS
Sbjct: 520 GDLDAALINSSPDEDMAILDQLLELQQGENDYQKDQAKTENAINEVDEELDEQEKLLEKLRGSLQVYHTMKGKYEKLLNEVSSLEQEKGELAEQLAKVEVD--------------PTRGCSKAIKLKLDKVEESLARARSESRKQQQMYKSAEREAQKARAMERKIEELKLGRVNLMKKQKETIARHRAFTENKTREIQTLKKKERKQGKNLTKLETECKKHKKALDRRTS 736
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Match: A0A6U3PNB4_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3PNB4_9STRA) HSP 1 Score: 57.0 bits (136), Expect = 3.830e-5 Identity = 38/106 (35.85%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 727 RGTAEALRERLKGVESQLASLGAQKKKQERAVMLLKREAKKCEDLQEGLGHLKRQKVVLQKRQQEAAKRHREYEQRMSREIQAMRKKNSKDLRSMSKMELEVRRQK 1044
+G + A++++L+ VE L ++ +K ++ ++EA+KC L+ + LK KV L K+Q+EA+ +HREY + +REIQA+++K K + MSK+E E ++ K
Sbjct: 16 KGCSIAIKKKLEKVEFSLQRARSETRKHQQMYRKAEQEAQKCRALERKISELKAGKVALTKKQREASAKHREYTEAKTREIQALKRKERKTDKQMSKLEAECQKYK 121 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12220.1873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12220.1873.1 >prot_Ecto-sp13_S_contig12220.1873.1 ID=prot_Ecto-sp13_S_contig12220.1873.1|Name=mRNA_Ecto-sp13_S_contig12220.1873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=357bp DPEATGGAAGLGLSPDAQAEEVLGRDEVKDYLKVVKARVADLVRKRQTAGback to top mRNA from alignment at Ecto-sp13_S_contig12220:178..5026+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12220.1873.1 ID=mRNA_Ecto-sp13_S_contig12220.1873.1|Name=mRNA_Ecto-sp13_S_contig12220.1873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4849bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12220:178..5026+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12220:178..5026+ >mRNA_Ecto-sp13_S_contig12220.1873.1 ID=mRNA_Ecto-sp13_S_contig12220.1873.1|Name=mRNA_Ecto-sp13_S_contig12220.1873.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1071bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12220:178..5026+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |