mRNA_Ecto-sp13_S_contig1222.1870.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1222.1870.1
Unique NamemRNA_Ecto-sp13_S_contig1222.1870.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: D7G7G8_ECTSI (Similar to vacuolar protein sorting 24 homolog n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7G8_ECTSI)

HSP 1 Score: 365 bits (938), Expect = 1.290e-117
Identity = 212/216 (98.15%), Postives = 214/216 (99.07%), Query Frame = 3 
Query:  201 MHRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 848
            M RLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELV SRNAKNRMHEGKAQLHSVQMQLQNQIALI+VTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGL+LTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL
Sbjct:    1 MRRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVMSRNAKNRMHEGKAQLHSVQMQLQNQIALIKVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLSLTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 216
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A835ZDQ5_9STRA (Vacuolar protein-like protein sorting 24 (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZDQ5_9STRA)

HSP 1 Score: 184 bits (467), Expect = 9.580e-50
Identity = 101/183 (55.19%), Postives = 137/183 (74.86%), Query Frame = 3 
Query:  219 RKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE 767
            +KVDP+EQAKEW R++N E+R +ERQI S++  E K+ +DIK +AKEG+RNE+A+R+LA+++VT R  K RM+EGK Q+HSVQMQL+NQ+AL++VTG + KSTE+M  +G LV IPELQ  M  LA EMERAGL EE++ D +  T     D + D EV+KV+AEIT   + GA +AP   P+
Sbjct:    1 KKVDPQEQAKEWNRTMNREIRTIERQIKSMDNEEAKLVRDIKKLAKEGSRNERAVRVLARQMVTLRQTKTRMYEGKVQIHSVQMQLKNQLALVKVTGCLSKSTEVMQMMGKLVSIPELQATMTDLAREMERAGLTEEILGDAMEDTMGTNED-EVDQEVEKVLAEITATTMAGAEEAPVGEPQ 182
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A8J2S9J1_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J1_9STRA)

HSP 1 Score: 150 bits (380), Expect = 8.510e-38
Identity = 89/212 (41.98%), Postives = 141/212 (66.51%), Query Frame = 3 
Query:  213 LHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 848
            L +  DP+E+ K+WRR +  E RA++R+I  LE+ E+K + + +   KEG ++  A +++A+E+V +R A+NRM   KAQ++SV MQLQ Q A++R  G +KKSTE+M  +  LVK+PELQ+ M ++  EMER+GL+EEVV D L   D + ++ + + +V+KV+ E+   + +G  DAP  +PE  AV      AE ++  + MKARL++L
Sbjct:    9 LQKAKDPQEEMKKWRRELRKEQRAMDREISKLEQMERKSRDECRKYGKEGRQD--ACKIVAREIVRTRAARNRMLMAKAQINSVNMQLQTQAAMVRAAGCMKKSTEVMRCMNKLVKLPELQKTMMEMQREMERSGLIEEVVGDALDELDGDDVEEETELQVNKVVEELAGDLFKGQTDAPETLPEQQAV----EPAEADDDLDTMKARLQAL 214
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A2R5GMG8_9STRA (Charged multivesicular body protein 3 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GMG8_9STRA)

HSP 1 Score: 147 bits (372), Expect = 3.780e-36
Identity = 89/189 (47.09%), Postives = 134/189 (70.90%), Query Frame = 3 
Query:  201 MHRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALT-DAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVP 764
            + R+  ++ DP E  KEW R++  E R L+RQ+  +ER E K+Q+DIK +AK+G     AIR LA  LV S+ AKNR++  KA ++SV +QL++Q A +R+  V++ ST++MA++  LVK+PE+ +NM ++A EMERAGL+EE++ D +  T D EG+D +ADA VD++IAE+T G+L+ A  APT  P
Sbjct:   12 LERVGLKQPDPRELVKEWTRNLRREQRMLDRQLRQIEREELKMQRDIKMLAKKGEMA--AIRPLAHSLVQSKKAKNRINVTKAHMNSVNLQLRHQAAQMRMAQVMQSSTKVMAAMNSLVKMPEVAKNMQEMAMEMERAGLIEEIMDDAMESTFDDEGMDGEADAAVDQIIAELTTGLLDKAPAAPTTAP 198
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A507DEA3_9FUNG (Uncharacterized protein n=1 Tax=Synchytrium endobioticum TaxID=286115 RepID=A0A507DEA3_9FUNG)

HSP 1 Score: 142 bits (357), Expect = 1.060e-34
Identity = 77/177 (43.50%), Postives = 125/177 (70.62%), Query Frame = 3 
Query:  201 MHRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL 731
            ++ L+ +K+ PEEQ K+WR  +  + R LER+I S++  E KV++DIK  AK G +   +   LAKE+V +R AK RM+  KAQ++S+ MQLQ Q+A+I+V G I+KS E+M  +  L+K+PE+ +NM ++  EM +AG++EE++ D + + D EG+D +++  VDKV+ E+T+G+L
Sbjct:    5 LNMLVGKKLSPEEQVKKWRSDMRQQERELERRIRSIDSEEAKVKRDIKAAAKRGDKT--SCMTLAKEVVNARKAKERMYTSKAQMNSIIMQLQQQVAMIKVAGNIQKSAELMKLVNKLIKVPEMSKNMQEMQREMMKAGIIEEMMNDAIDMADDEGIDDESEEIVDKVLLELTDGLL 179
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A1Y2CQ12_9FUNG (Uncharacterized protein (Fragment) n=1 Tax=Rhizoclosmatium globosum TaxID=329046 RepID=A0A1Y2CQ12_9FUNG)

HSP 1 Score: 139 bits (351), Expect = 2.910e-34
Identity = 82/186 (44.09%), Postives = 130/186 (69.89%), Query Frame = 3 
Query:  213 LHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKA-IRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL--EGAVDAPTAV 761
            + +++ PEEQ K+W+ SI  + R L++QI  +E AE KV+KDIK  AK   RN+ A  RLLAKE+V SR A++R+H  KAQL+S+ MQLQ Q+A+ +V G +K+ST+IM  + +L+K+PE+   M +++ EM +AG++ E++ D +   D EG++ +AD EV+ ++ ++T+G+L   G V AP  V
Sbjct:    1 MFKRLTPEEQVKKWKASIRGQERELDKQIRGIETAEAKVKKDIKAAAK---RNDAASCRLLAKEIVRSRKARDRLHTSKAQLNSLSMQLQQQLAVAKVAGSLKQSTDIMKIVNNLIKLPEIHNTMQEMSKEMMKAGIIGEMMEDAIDTLDEEGIEEEADKEVENILFDLTDGLLGQAGQVGAPLEV 183
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: UPI00145575B8 (charged multivesicular body protein 3-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145575B8)

HSP 1 Score: 140 bits (352), Expect = 5.550e-34
Identity = 92/211 (43.60%), Postives = 138/211 (65.40%), Query Frame = 3 
Query:  228 DPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPE--PAAVAAXXXXAEEE--EKANAMKARLESL 848
            DP+EQ +EW R++  E R L+RQI S+ER E KV++ IK  AK+G ++    ++LAKE+V SR AK R+H  KAQL+SV MQ++NQ+A+IR++G + KSTE+M  +  L K+ E+Q  M +++ EM +AG++EE++ D     + + L+  +  EV+K++ EIT   L    DAP AV +  PA   A     EEE  E  + M+ARLE+L
Sbjct:   11 DPKEQVQEWTRNLTKESRKLDRQIRSIEREELKVKRSIKEAAKKGQKD--VCKILAKEIVNSRKAKTRIHTSKAQLNSVSMQMKNQLAVIRMSGALSKSTEVMKYMQQLCKVSEVQATMMEMSKEMMKAGIIEEMLEDTFESMEDDDLEEASSEEVEKILFEITANHLS---DAPKAVKDDLPAGATAVVSDEEEEVAEDISEMQARLEAL 216
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A433PQA2_9FUNG (Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQA2_9FUNG)

HSP 1 Score: 140 bits (352), Expect = 5.870e-34
Identity = 90/212 (42.45%), Postives = 143/212 (67.45%), Query Frame = 3 
Query:  222 KVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLE--GAVDAPTAVPE-PAAVAAXXXXAEEEEKANAMKARLESL 848
            K  PEE  K+WR+ I  + RALERQ+  +E  E KV+K +K +AK G  ++KA   LAKELV S+  K R++  KAQL+S+ MQL NQ++ +++ GV++KS+EIM  +  +V++PE+ + M +++ EM +AG+++E++ D +   D E L+A+AD EV+KV+ ++T+G+L   G V AP  VPE PA+        EEE + + M+ RL++L
Sbjct:   14 KKTPEELVKKWRQDIRAQERALERQLRGIEGEELKVKKSLKALAKRG--DKKACMTLAKELVRSKRHKERLYTSKAQLNSIVMQLNNQLSTLKIAGVLQKSSEIMKLVNQVVRLPEISQAMQEMSMEMMKAGIMDEMIQDTMESLDDEDLEAEADEEVNKVLFQVTDGLLGEVGQVGAPLEVPELPAS-----EEEEEEPELDIMQKRLQAL 218
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A4P9YWD9_9FUNG (Snf7-domain-containing protein n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9YWD9_9FUNG)

HSP 1 Score: 139 bits (351), Expect = 8.000e-34
Identity = 95/219 (43.38%), Postives = 140/219 (63.93%), Query Frame = 3 
Query:  207 RLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVL--EGAVDAP---TAVPEPAAVAAXXXXAEEEEKANAMKARLESL 848
            R + R   PEE  +EWR+SI  + R LERQI S+E  E KV++ IK  A  G ++  + R+LAKELV SR  K R+H  KA L S+ MQLQ Q+A+++++G +K+STE+M ++  LV++PEL   M  ++ EM +AG++ E++ D + + D E L+ +AD EV+KV+ E+T G L   GA+ A    TA P  AA A      E E +  +M+ARLE+L
Sbjct:    6 RFIFRTRKPEELVREWRQSIRAQERQLERQIRSIETEELKVKRTIKQAA--GRKDTASCRMLAKELVRSRRQKTRLHTNKAHLSSINMQLQQQLAMLKMSGTLKQSTEVMRAVNRLVRVPELSAQMQAMSMEMMKAGVISEMMEDTMDMLDDEELEDEADEEVEKVLFEVTNGKLGEAGAMPAEHIATATPAEAAAAVE----EGEPELESMQARLEAL 218
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BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Match: A0A2P6MM76_9EUKA (SNF7 family protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6MM76_9EUKA)

HSP 1 Score: 140 bits (354), Expect = 1.580e-33
Identity = 92/222 (41.44%), Postives = 144/222 (64.86%), Query Frame = 3 
Query:  183 PFDFTNMHRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTMAKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIRVTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLALTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAXXXXAEEEEKANAMKARLESL 848
            PFD T+M  L  ++  PEE  K+WRR +  E R L+RQI +++ AE+K  + IK +AK+G ++  + ++LAKE+V SR AK ++++ KAQL+SV MQLQ  ++++++ GV+ KS  IM S+ DL+K+P+L + M  +  EME+AGL+EE++ D L +   E LD  AD E+DKV+ +I  GV   A     AVP+ A         E++ + N ++ARL +L
Sbjct:   69 PFDITSMF-LFGKRPSPEELVKKWRRELTKEQRLLDRQIRAIDLAEQKTIRSIKDLAKKGDKS--SAKILAKEIVRSRAAKEKIYKSKAQLNSVGMQLQQNLSMMKLAGVMSKSATIMTSMNDLIKLPQLHQTMMVMGREMEKAGLIEEMMTDALEMD--EDLDEAADEELDKVVQDILLGVKSAA----PAVPKEAMT---QEGEEDDVEDNELEARLNAL 278
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1222.1870.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7G8_ECTSI1.290e-11798.15Similar to vacuolar protein sorting 24 homolog n=2... [more]
A0A835ZDQ5_9STRA9.580e-5055.19Vacuolar protein-like protein sorting 24 (Fragment... [more]
A0A8J2S9J1_9STRA8.510e-3841.98Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2R5GMG8_9STRA3.780e-3647.09Charged multivesicular body protein 3 n=1 Tax=Hond... [more]
A0A507DEA3_9FUNG1.060e-3443.50Uncharacterized protein n=1 Tax=Synchytrium endobi... [more]
A0A1Y2CQ12_9FUNG2.910e-3444.09Uncharacterized protein (Fragment) n=1 Tax=Rhizocl... [more]
UPI00145575B85.550e-3443.60charged multivesicular body protein 3-like n=1 Tax... [more]
A0A433PQA2_9FUNG5.870e-3442.45Vacuolar sorting protein VPS24 n=1 Tax=Endogone sp... [more]
A0A4P9YWD9_9FUNG8.000e-3443.38Snf7-domain-containing protein n=1 Tax=Syncephalis... [more]
A0A2P6MM76_9EUKA1.580e-3341.44SNF7 family protein n=1 Tax=Planoprotostelium fung... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1222contigEcto-sp13_S_contig1222:2..6606 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score370.5
Seed ortholog evalue5.2e-100
Seed eggNOG ortholog2880.D7G7G8
Preferred nameCHMP3
Model size2667
KEGG koko:K12193
KEGG Pathwayko04144,ko04217,map04144,map04217
KEGG ModuleM00412
Hectar predicted targeting categoryother localisation
GOsGO:0000815,GO:0000920,GO:0002020,GO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005546,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005769,GO:0005770,GO:0005829,GO:0005886,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006900,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007041,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0008333,GO:0009056,GO:0009057,GO:0009987,GO:0010008,GO:0010256,GO:0010564,GO:0010824,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016032,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019058,GO:0019068,GO:0019538,GO:0019899,GO:0019941,GO:0022411,GO:0022607,GO:0030163,GO:0030496,GO:0031090,GO:0031210,GO:0031410,GO:0031982,GO:0032386,GO:0032465,GO:0032467,GO:0032509,GO:0032510,GO:0032511,GO:0032535,GO:0032879,GO:0032886,GO:0032984,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0034622,GO:0035091,GO:0036257,GO:0036258,GO:0036452,GO:0039702,GO:0040012,GO:0040013,GO:0040017,GO:0042221,GO:0042493,GO:0042802,GO:0042803,GO:0042886,GO:0043162,GO:0043167,GO:0043168,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043328,GO:0043632,GO:0043900,GO:0043901,GO:0043902,GO:0043903,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045324,GO:0045787,GO:0046605,GO:0046618,GO:0046755,GO:0046907,GO:0046983,GO:0048284,GO:0048518,GO:0048519,GO:0048522,GO:0048524,GO:0048525,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0050997,GO:0051036,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051258,GO:0051259,GO:0051291,GO:0051301,GO:0051302,GO:0051493,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051781,GO:0060341,GO:0060627,GO:0061024,GO:0061025,GO:0061763,GO:0061919,GO:0065003,GO:0065007,GO:0065008,GO:0070405,GO:0070507,GO:0070676,GO:0070727,GO:0070925,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0090066,GO:0090068,GO:0090174,GO:0097352,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901564,GO:1901565,GO:1901575,GO:1901981,GO:1902186,GO:1902187,GO:1902188,GO:1902936,GO:1903649,GO:1903900,GO:1903901,GO:1903902,GO:1904669,GO:1990381,GO:2000641
Exons6
EggNOG free text desc.vacuolar transport
EggNOG OGsCOG5491@1,KOG3229@2759
Ec32 ortholog descriptionSnf7 family
Ec32 orthologEc-02_000210.1
Cds size651
COG Functional cat.N
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1222.1870.1prot_Ecto-sp13_S_contig1222.1870.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1222 1818..6406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.7902908-UTR-Ecto-sp13_S_contig1222:1..18171681462649.7902908-UTR-Ecto-sp13_S_contig1222:1..1817Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1222 2..1817 -
1681462649.8605444-UTR-Ecto-sp13_S_contig1222:6406..66061681462649.8605444-UTR-Ecto-sp13_S_contig1222:6406..6606Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1222 6407..6606 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.8032408-CDS-Ecto-sp13_S_contig1222:1817..20091681462649.8032408-CDS-Ecto-sp13_S_contig1222:1817..2009Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 1818..2009 -
1681462649.812744-CDS-Ecto-sp13_S_contig1222:2361..24701681462649.812744-CDS-Ecto-sp13_S_contig1222:2361..2470Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 2362..2470 -
1681462649.821682-CDS-Ecto-sp13_S_contig1222:3058..31191681462649.821682-CDS-Ecto-sp13_S_contig1222:3058..3119Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 3059..3119 -
1681462649.83099-CDS-Ecto-sp13_S_contig1222:3428..35311681462649.83099-CDS-Ecto-sp13_S_contig1222:3428..3531Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 3429..3531 -
1681462649.8405719-CDS-Ecto-sp13_S_contig1222:4159..42701681462649.8405719-CDS-Ecto-sp13_S_contig1222:4159..4270Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 4160..4270 -
1681462649.850735-CDS-Ecto-sp13_S_contig1222:6331..64061681462649.850735-CDS-Ecto-sp13_S_contig1222:6331..6406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1222 6332..6406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1222.1870.1

>prot_Ecto-sp13_S_contig1222.1870.1 ID=prot_Ecto-sp13_S_contig1222.1870.1|Name=mRNA_Ecto-sp13_S_contig1222.1870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=217bp
MHRLLHRKVDPEEQAKEWRRSINHEVRALERQIVSLERAEKKVQKDIKTM
AKEGTRNEKAIRLLAKELVTSRNAKNRMHEGKAQLHSVQMQLQNQIALIR
VTGVIKKSTEIMASIGDLVKIPELQENMFQLATEMERAGLVEEVVADGLA
LTDAEGLDAQADAEVDKVIAEITEGVLEGAVDAPTAVPEPAAVAAPAAAA
EEEEKANAMKARLESL*
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mRNA from alignment at Ecto-sp13_S_contig1222:2..6606-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1222.1870.1 ID=mRNA_Ecto-sp13_S_contig1222.1870.1|Name=mRNA_Ecto-sp13_S_contig1222.1870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6605bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1222:2..6606- (Ectocarpus species13 EcNAP12_S_4_19m)
CGCCGATCTCTCTAGCCGATACGGTTTCTCTCCGACAGGTTAGGCGACTA
GTTATCTCTGTCTTTGAGGTGAAGAATTCTGTTCGATTTGGCAGGCGATC
TCAGCGTGGCGGTCGTTTGAGAGCTGCTTCAAAGTCGTTAGTTACAGCAG
CGAGGAGCCTGCCGAGAGAGTCGGAGCGCGCTCCTTTCGACTTCACCAAC
ATGCACCGACTGCTGCACCGGAAAGTCGACCCTGAAGAGCAGGCCAAGGA
GTGGAGGCGAAGCATCAACCACGAGGCGAGTTGTTGTCATGCAAGTTCTC
CTACTGCACAGGCACATGATTTCCATTCTGTGTGTCCAACCACGAACTCT
GCCTACGAAATACGAAAGAAAAAAGGAATAGCGGCGAGGACAGAAAAGGC
GGCGTAACTCTCGTCTTGTTTGCAGTCTTGCTGTCTCTCTGTGTCTCGCA
ACGTCGCCATCGCAGGGCAGCATCATGACCATCGACACTTGTCTCTCACA
GTAAAACATAGCATATCTCTGGTGATTGTGTATCCCCCTGCCTGACTCGA
ACGATTTCGATTTTTTCTATCTTGCTCCCCTCTCTCTCTCTACCTTTTAC
AGGTACATATCTGCTCTCCTCTTCAGCATGCTCTACCTTTCTTCCAGAGA
GTCGTTTCCTGTTTCCTGCCGATGAAGAGTTGAAATTTCGGTAACCGATC
ACGCTGCTGTTTGACTTTGCTCTTGTGCAACCCTGGGTGGTCCGTCAGAT
ATATACGCCGAAAGGCCTGTGAACCGGCGCCAGAATAAACATGACAAACA
CACACACCTCCTTTAAATACACAGCAACAGTGGCGGGACGTGACGGTCAC
GTATCGTAATGTACCATATTCCACACAAGATAACACACCCCCTGGGGACC
GATTTTCAAAGCTCGATTACCCCACGCCGAAGAGGATGCATGCAATGTAA
ACGATGCGTTTTCGGATAGCTCTCGACGAGACAGTTTTTAACTCCGCCGT
TTTCGGCGGTGCGACTCTCTCTGCTGGTGGTAAATCGAGCTTTGAAAATC
GGTCGAGGTGGTGTGTTGTCTTGTCCGCTGCGACTCTCTCTCTGCTGTTG
ATGAGTCGAGCTTTGAAAATCGGTCGAGGTGTGTTGTCTTGTCGTATACG
GTAACATGCACTATACATACGTACGACACACACGTCGAGCACTGCCAGAT
GCAACAACTGTTACTCCGTTCAACTACTACATATCTTGTATTTGTATGCG
CTGGTGTCACCCCCCCCCTCCCCCCCCAATGGGGTACACTTGGACATCCA
CAGGGTTTGTTGAACACACTGAAGGGACACATTTACGACCACGACCCAAA
TTCTGTGCGTTTTGTGCGGACGTGTTCCGAGTGTTCTCTGACATTATCCC
GGACCGCCCGATCTTTTTTTGTGTACCGTACATGTACCAGCTGATCTTCA
CCTGGTTCATGAACACTCCATTCATGATTGACACACGCTCTTCGCCCTTC
AACATCGCAATGTCAATGCAAATTGCACATTGTATATGTATTCAGCCATG
TCTTCAGCCATCAGCCACTTCTCCCGATAGAAGTGAACAGTATGGCTCGA
AGATCTGTTGGACGAATTGCGTTCATCTACCGTATGTGTACGAATCGTGA
AGTAAGATTGTACACCGAGCTTGTTTCTTACGACCGGCTTACATGTTACA
CTTTTGGTTGGTAGGTTGTTTTTTCTAGTGAGTGCAGCAGTATCATCGTA
GCTCAGCGCAAAGGCGTAACTGTCGCAACGAATGCCAATTGATGGTGTCA
AGTGTATGCCCATCTCGTATTACGATCACACACATACTATTTAGCTTACC
CTACGAAGTCTACGGTACACGCCGGTCTATCGCAACACTATCCACGGTGT
GCTAACCTCATGTAAACCGGTGGCATGTGGCTTCCGGTTAGGGAACACAC
GGGATGCGAAAGTGTTGAAGAATATTTGCCGTGGCCACCACTGCTGTTAC
GCCAAAGTGGCAAGCACCCGCCACATCTGGTCAAATGTTGTGTGTATGCC
TGTTTCCCCACCGTACACCCGTCCCATGGTCGTGGATTTTTTCCTCGTGT
ACCATACGTCGATTTTTTCGGGCGCGACGATTCCGCGGAAAGCAATCCCA
TCCGCATTTGGCCCCGTAGTGCTTGTTGTAACGCCACGAGTCTGTAACCC
AAATCGTTTATGGATTATTTTCGCGGGGCGTTTTTCTTCCACCCACTCCG
TATTAGCCGCCAAGGCATATGGTTACGTGAGTACTCCCCCGCCGTGCTTG
CTGTATGTAATGTGTGGTGTGTGACATGTGATGCAGGTGCGAGCGCTTGA
GCGACAGATCGTTTCCCTGGAGAGGGCCGAAAAGAAGGTGCAGAAGGACA
TCAAGACCATGGCCAAGGAGGGCACCCGCAACGAAAAGGCCATTCGAGTG
AGCATGAGGATGGGGATGGGGATGAGGATGAGGATTTGATGCACCGGGCG
TGTTGTGTCGTGTTGTTCTCTTGTTTGCTTTTCTTCGCTCAGGAAGAGTT
TCGAATTTCTGGGTTGAAACATCTCGCGATTTGTATGGGTTATCTAGCGG
TGTTGGTGTTGGAGTTGTTAGGGTGGCGGACTTGTGTGAGCCGGCGCCCA
GTTTATAGATGGGACGAAAGCACACACGATGTAAAGCAGATAGTATTCCC
GGCATCATGTCTCGCAATCTTGCTGAGTGACGAGATCTGGCGTAGATGTG
CAATTCAGCAACCAAGAGCACAACCGCGACACGTGAGTGTTCGGAGCACA
GCGAAAGGAATTTTTCTGTGCCCAGGCTCGCAGGCTTTGGAGAGCGTTGT
ACTGGCACGAAGATGCGTATTCGAATATCATGATGGTGTCTTTGAATTTG
CTGTGGCTTTGTACCGTCGTTCTCCGTCTGAAATGGCATGTCCTATGGGC
GATGACACCAAGGTTATGTATTTCGTGAACTACATGTAACAGGTCATGTG
TGTTTCGTCTCCTGATAATGGTGTACTGCATCGTCCTTTCTTTGGTTCTG
TGGTGTAAACGATTTTGTGTTCCAGCTACTTGCGAAGGAGTTGGTCACGT
CGCGTAACGCCAAGAATCGCATGCACGAGGGAAAGGCACAGCTTCACTCC
GTCCAGATGCAGCTGCAAAACCAAATAGGTGAGCCAGGGCCGTGTCTGTT
CGTGTATATCAGTGTAGTCGATTTGTTTTACGGCAAGGTGACGGTTGCGT
GGCCGTTTGGAGGAGGGCGCAGCTGCTGCCGCCTGTTCAGATGCAACCTC
AGAGACACCGCGCAACGCGCCCACGCTTGATGCTGCAGTCTTGATTCTCG
CCCTTCACGCCGCCGCCTTGTGCAGCTTCTTTGGTGCAGGGCATGGCTTG
AAGGGCTAGGCTCGCACCTCAACCCGAGGATCTACCCCTCTGCTTCTATG
CTCATCGATTGCTTTTGTGTTTGTGTGTTTTGTTCAGCTTTGATCAGGGT
GACCGGCGTCATCAAGAAGAGCACAGAGATCATGGCGTCCATCGGAGAGT
GAGTGGAACTACCTACCGAGCTCGACGATGCCGAATACGTTGTCCATTCG
TGTATGGTTTGTGTTTGCCGACGGCCTTCAATCCGTCTACGCTCTTGATC
GTTGATGGTAGCGCTCCGGAGCTCGTCACGTTGGTTCTGGCTGTTGCTTT
TGTCCAAGTTTGGTCGAACGGTGAACACGGCACTTTGGTGCCGTGTAGCT
GAGCCCAGCTACCTGAACGCCTCGAAGTCGGAAGACACAGAATTGCGGCT
CATCGGAAACTGGGTAGCTGGACCCCGCGACCAACTAACTCTCCTGTTCT
ACGTACACAACACGATGGCTCTTGTACTACGATACCCTCTACTACAGCAC
GATGGGCGTGTTGTGGTGTTCCTGGTGACCCTCCACGGTGTAATGTACAG
TACGTACACGTCATGTTTCGCGCCCCTGGGGTCCTCATGTGCAGTAACGG
CTACCTGTAGGTCTTCGCATGGGGTATGTCTTGAGGTTATTGTTGTGACG
TGCCGACTAAATTGCCTGTTCGTATGTGTGCGCTCTCACCGTCTGCGTTT
TTTTTTTCCCGTTTTTTTCTTGTTTTTTTTTTGCAGTTTGGTGAAGATTC
CTGAGCTACAGGAGAATATGTTCCAGCTGGCAACGGAGATGGAGCGTGCG
GGATTAGTGGAGGAGGTTGTTGCCGATGGACTTGCCCTTACAGACGTGAG
ATCGACTTTGAAGGCCCCTTTCTCGTTCGCTGTACACGTATCGTTTTATT
TTGTACCATACTCCGGAGTATTTTCCAAGCAGAGACTGGAGCTGTTTTTG
ATGTGAAGACAACAACACTGAAGTATTGTAGTCTAATCTAGAGGCTTGTC
AACGGCCACGTCTCTTGAAGGTGCTCTACTCGTTCGGAATGTCTTCGACT
GTCGAGCAAGTAAAACGCTCACCAGCAGAGACACACGGTTTGGGATTGCA
TCGAGAATGCGGCGCCATTTCCGAGGACAGTACAGCCTGTGTCAATAGTA
CACTGTCCGGGTTGTGCCGCATTTCGGATTTTTGTTTCGGCATACAGGCT
GAGGGACTCGATGCCCAGGCAGACGCGGAGGTCGACAAGGTTATCGCCGA
GATTACGGAAGGGGTTCTCGAAGGGGCGGTGGATGCGCCGACGGCGGTTC
CCGAACCGGCAGCGGTTGCGGCGCCTGCTGCTGCCGCTGAGGAGGAGGAG
AAGGCGAACGCCATGAAGGCTCGATTGGAGTCTCTGTGAAGCGTGAGCGG
CAATGATGATACGCTCTCTTCGTGGGAGTGTTGCCTCGGGGTGCGGTACA
AGTTTCACTCTCAGGTGTATGTTTTCACACGCACACAGGCAATCGAAAAT
TGGGGTGCGCACAATGTAAATAAAACGTCCCAACAGGATTGACTGGGACT
CTCTCTCTTCCGACCAAGGGGGGGAGGGCGTGTGAAGAGGTGGGAAGGTC
AGCACCATTACAGCCCCCTTTGATGTTAGGTTGAAATTGCGTAAGCAGAG
GACTTGTATCGCTTCTGGTGCTCTTCTTTTTCCAAAGGGTTGCAGTTGTT
ATCGAAGCGGTGGTAGTCACGCCGCTTGATGCTGCTACTGTTACTGCGGT
GGCCGTAACAGCCAAAAGGGGGTGTTGTGGTATCATCGTGACCGGCCTTG
TGTTTGGTGGACGTCGTTGTGTGCACACAGGCCAGCGTGTTGTCGAAGGC
ACACCGGTTGCATGCTGCAGCAACCATGGAGCGTTTCTGCTCGGTCGGCT
TGAAGTATAACTTGTTGTGCTGTGACCGCAACGTAAGGTCATACGGGAGA
AATAGGCGGCCGGAGAGAACTCTCAAGCTCGAAATAGTGATTGCCGAACT
AGCTCGTTCGGCTGTCCTCTTTTGTCCTCCGTACCTTCCTAGTGTGTCCT
TGATTAGAACGCGGTTGGTCTTTACGTAATGGACGTGCTGGTCGACATGT
TCGTGCCTGGAAGAATCCGATGACCCAAAGGTGATACGCCCTTGATTTTC
GACCCCTGACTGCGCAATGCGTGTGGGTCTCGAGTTTGGACCCGAGAGGG
GGGCGGTCGAGAGATTCCCGCTATGGACAAGGTTACTGCACTTGAAGCGA
AGATGGGTATGGCAGGTAGTACCGTGGTTGGTTTGCGTTTAGCGTACGCT
CTTCAGGGCTTGCTGCATGTTGGCCTAGAGCTGGGCCGTGGATACTGTAG
ATGGCAACAGCACGGGCGTGAAACATTGGTATAGTACGCCTATTGTCCGG
CCGTGCTGCCCTTTAGCCAAACACCGTCGTGCACGCAACTCACGACATGC
TTGAGCTTCCAAAACTCAGTGATGCCATTTCACACGCATGGACACCAATC
CCCTCACCGACATTGCAGAACTCTCGTAGCACATAGTCATGGCGCCTGGT
TGACGCACAGTTTTGTGTGATTTAGTAGACCAACCGCGTGTATGGTGAAT
GTTGTATGTAGGTACATAAGTGTTTGGGTTGTAGCAGTCTTCTGCTCTCC
GCGGGGGGCTCGATCCTGTTTTTCTTGGTTCCACCGCTCTTTTTTCCTAT
GAAGGATTTGTTGTTGGTCGTGTCTGTCGTGGAAGGAAGAGCTGCTTGAT
AGTCGTTGATGATTCCGAAGGTTCATACTAGCGACGAAGGGTTCCAATGC
AAGTGCAAGAGGTTTTGTACACAAGCCAGGTTCGGGGTCACGACTGGACT
GTCCTTCCATCGCCGGTGCAATAGATCCCAGCGTTCCTGTGAAATGTTTT
GTGCGCTGTTCGATGTCGTAGGATAGCAGAGGGACGTAGAACTCTATCGA
GACGACCGATCACTGGTAGAGCCAATCATTAATGCAGGAGGCATCAATCA
CAGTTGCTGCGGGGGTCTGTTGTAGTGCAGGACGGCCGATGGAGTAAATT
GTCGCGCGTCGGGGCTTCGTCACAAGAATGTACCTCGTTCGGGTCTTCCG
ACTGAGAGAGATCAGGACGGACGGAAATGTGTACGGCGCCATGAGACCAC
TAGAGGTTGTGACGGTCTCTCAGAGGGAACTCAGCAGGAGGTGCACTTGT
TTTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1222:2..6606-

>mRNA_Ecto-sp13_S_contig1222.1870.1 ID=mRNA_Ecto-sp13_S_contig1222.1870.1|Name=mRNA_Ecto-sp13_S_contig1222.1870.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=651bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1222:2..6606- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACCGACTGCTGCACCGGAAAGTCGACCCTGAAGAGCAGGCCAAGGA
GTGGAGGCGAAGCATCAACCACGAGGTGCGAGCGCTTGAGCGACAGATCG
TTTCCCTGGAGAGGGCCGAAAAGAAGGTGCAGAAGGACATCAAGACCATG
GCCAAGGAGGGCACCCGCAACGAAAAGGCCATTCGACTACTTGCGAAGGA
GTTGGTCACGTCGCGTAACGCCAAGAATCGCATGCACGAGGGAAAGGCAC
AGCTTCACTCCGTCCAGATGCAGCTGCAAAACCAAATAGCTTTGATCAGG
GTGACCGGCGTCATCAAGAAGAGCACAGAGATCATGGCGTCCATCGGAGA
TTTGGTGAAGATTCCTGAGCTACAGGAGAATATGTTCCAGCTGGCAACGG
AGATGGAGCGTGCGGGATTAGTGGAGGAGGTTGTTGCCGATGGACTTGCC
CTTACAGACGCTGAGGGACTCGATGCCCAGGCAGACGCGGAGGTCGACAA
GGTTATCGCCGAGATTACGGAAGGGGTTCTCGAAGGGGCGGTGGATGCGC
CGACGGCGGTTCCCGAACCGGCAGCGGTTGCGGCGCCTGCTGCTGCCGCT
GAGGAGGAGGAGAAGGCGAACGCCATGAAGGCTCGATTGGAGTCTCTGTG
A
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