mRNA_Ecto-sp13_S_contig12217.1868.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: D7FLF7_ECTSI (Probable Spc3 homolog, subunit of Signal Peptidase Complex n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLF7_ECTSI) HSP 1 Score: 205 bits (522), Expect = 5.210e-67 Identity = 105/105 (100.00%), Postives = 105/105 (100.00%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQASQSVRFA 315
MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQASQSVRFA
Sbjct: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQASQSVRFA 105
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A6V1NT77_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NT77_HETAK) HSP 1 Score: 130 bits (328), Expect = 1.710e-36 Identity = 62/97 (63.92%), Postives = 78/97 (80.41%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
M+T WVRVNAVVFFGLTVLLVL+++ A STYLH+G P+++ LGV+ R+ + G DR L++ D+DADL PAFNWN+KQLF FVVAEY T NP+NQ
Sbjct: 4 MNTVWVRVNAVVFFGLTVLLVLAIICAFSTYLHKGEPNIKYLGVNTIRSLKSHGGVDRALISFDLDADLTPAFNWNIKQLFVFVVAEYATEKNPLNQ 100
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A835YJ42_9STRA (Signal peptidase 22kDa subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJ42_9STRA) HSP 1 Score: 129 bits (323), Expect = 8.740e-36 Identity = 60/97 (61.86%), Postives = 79/97 (81.44%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
M+T WVR+NAVVFFGLTVLL L+++TA STYLH+G P V+ L ++K ++FR DR ++N D++ADLAPAFNWN+KQ+F FVVAE+ T TNP+NQ
Sbjct: 1 MNTVWVRLNAVVFFGLTVLLGLALMTATSTYLHEGHPTVKTLRLNKIKSFRSQSKVDRAIINFDLEADLAPAFNWNIKQIFVFVVAEFATKTNPLNQ 97
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7S2XZ74_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XZ74_9STRA) HSP 1 Score: 121 bits (303), Expect = 9.090e-33 Identity = 57/97 (58.76%), Postives = 76/97 (78.35%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
M+T WVR+NAVVFFG TVLL L+ + + ST+LH+G P ++ LG++ R+ R +G DR+L++ D+DADL+ AFNWN+KQLF FVVAEY T TNP NQ
Sbjct: 1 MNTIWVRLNAVVFFGFTVLLCLACMCSFSTFLHKGEPHIKYLGLNTIRSMRAQKGGDRVLISFDIDADLSGAFNWNIKQLFVFVVAEYATKTNPFNQ 97
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7S2SN40_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SN40_9STRA) HSP 1 Score: 117 bits (292), Expect = 6.490e-31 Identity = 58/97 (59.79%), Postives = 72/97 (74.23%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFFGLTV++VL+VLT ST H+G+P V L ++ T R D +L+ D+ ADL+PAFNWN+KQLF FVVAEY T TNP+NQ
Sbjct: 1 MHTVWVRLNAVVFFGLTVIVVLAVLTWFSTVTHRGYPTVDTLQLNSIGTLRNHGERDIAILSFDLHADLSPAFNWNIKQLFVFVVAEYRTKTNPLNQ 97
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7S4J3F9_9STRA (Hypothetical protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J3F9_9STRA) HSP 1 Score: 112 bits (280), Expect = 2.970e-29 Identity = 58/99 (58.59%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFFGLTVLL LS+L ALS H PDV++L + R+ + G DR LL+ D+D DL PAF+WN+KQLF +VVA YE+ TNP NQ
Sbjct: 1 MHTVWVRLNAVVFFGLTVLLGLSILAALSKSGHSNRYRPDVKRLELKTLRSLKSHGGVDRALLSFDIDVDLRPAFHWNIKQLFVYVVASYESDTNPNNQ 99
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7R9UGA1_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UGA1_9STRA) HSP 1 Score: 112 bits (281), Expect = 3.040e-29 Identity = 60/98 (61.22%), Postives = 68/98 (69.39%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYL-HQGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFF TVLL LS L A+ T L H G P V L + + R+ RK DR +L D+DADL AFNWNVKQLF FVVAEY T TNP+NQ
Sbjct: 18 MHTIWVRLNAVVFFSFTVLLALSTLAAVQTMLFHDGQPVVHTLRLRELRSLRKHANIDRAMLTFDIDADLRGAFNWNVKQLFVFVVAEYATQTNPLNQ 115
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7S2XM83_9STRA (Hypothetical protein (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2XM83_9STRA) HSP 1 Score: 109 bits (273), Expect = 4.080e-28 Identity = 58/99 (58.59%), Postives = 72/99 (72.73%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFFGLTVLL LSVL A+S H + P V KL +++ R+ + G DR LL+ D+ AD+ PAF+WN+KQLF +VVA YET TNP NQ
Sbjct: 5 MHTVWVRLNAVVFFGLTVLLGLSVLAAISAIGHSTRHKPVVSKLSLNQLRSLKSHGGVDRALLSFDLHADMRPAFHWNIKQLFVYVVASYETDTNPNNQ 103
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: B8CCG8_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCG8_THAPS) HSP 1 Score: 107 bits (267), Expect = 2.730e-27 Identity = 55/99 (55.56%), Postives = 71/99 (71.72%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLH--QGFPDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFFGLTVLL LS+L ALS H + P + KL ++ R+ + G DR LL+ D+ AD+ PAF+WN+KQ+F +VVA Y+T TNP NQ
Sbjct: 1 MHTVWVRLNAVVFFGLTVLLCLSILAALSKIGHTRRYQPKIHKLALNNLRSVKNHGGVDRALLSFDLHADMNPAFHWNIKQIFVYVVATYKTDTNPKNQ 99
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Match: A0A7R9WMP4_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9WMP4_9STRA) HSP 1 Score: 107 bits (267), Expect = 1.300e-26 Identity = 55/99 (55.56%), Postives = 69/99 (69.70%), Query Frame = 1
Query: 1 MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGF--PDVRKLGVSKFRTFRKSEGTDRLLLNIDVDADLAPAFNWNVKQLFAFVVAEYETPTNPVNQ 291
MHT WVR+NAVVFFGLTVLL LS L A+S H + P + L + K R+ + G DR LL+ D+ AD+APAF+WN+KQLF +VVA YETP +NQ
Sbjct: 67 MHTLWVRLNAVVFFGLTVLLGLSCLAAVSKIGHSLYYKPVIHNLEIRKLRSLKSHGGVDRALLSFDIHADMAPAFHWNIKQLFVYVVASYETPNKKINQ 165 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12217.1868.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12217.1868.1 >prot_Ecto-sp13_S_contig12217.1868.1 ID=prot_Ecto-sp13_S_contig12217.1868.1|Name=mRNA_Ecto-sp13_S_contig12217.1868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=106bp MHTAWVRVNAVVFFGLTVLLVLSVLTALSTYLHQGFPDVRKLGVSKFRTFback to top mRNA from alignment at Ecto-sp13_S_contig12217:2044..4367+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12217.1868.1 ID=mRNA_Ecto-sp13_S_contig12217.1868.1|Name=mRNA_Ecto-sp13_S_contig12217.1868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2324bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12217:2044..4367+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12217:2044..4367+ >mRNA_Ecto-sp13_S_contig12217.1868.1 ID=mRNA_Ecto-sp13_S_contig12217.1868.1|Name=mRNA_Ecto-sp13_S_contig12217.1868.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=318bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12217:2044..4367+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |