mRNA_Ecto-sp13_S_contig12212.1866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12212.1866.1
Unique NamemRNA_Ecto-sp13_S_contig12212.1866.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI)

HSP 1 Score: 201 bits (510), Expect = 1.240e-57
Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 1
Query:    1 DSGDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            DSGDTPMTTI SCDRIPFGL PVRGILIIEGDIVC EKRTLVVSELAL+FSDMDGVRFE V+F VEQNATLSFAVASLLVEKL GDSGEIFTIEPGGFLGG  DQLRPLPE+G
Sbjct:  610 DSGDTPMTTINSCDRIPFGLIPVRGILIIEGDIVCAEKRTLVVSELALIFSDMDGVRFERVHFIVEQNATLSFAVASLLVEKLEGDSGEIFTIEPGGFLGGQFDQLRPLPENG 722          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI)

HSP 1 Score: 151 bits (381), Expect = 7.640e-42
Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1
Query:   16 PMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            P TTI SC++ PF   PV G+LIIEG+IVC+ KRTLVVSE A +FS MD V  EGV+F VE+NA L  AVA+L VEKL GDSGEIFTI+PGGFLGGHAD LRPLPE+G
Sbjct:   23 PTTTIYSCEQFPFDRNPVVGVLIIEGNIVCKNKRTLVVSERAYLFSHMDEVHLEGVHFIVEENAALGIAVATLHVEKLEGDSGEIFTIDPGGFLGGHADHLRPLPENG 130          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE)

HSP 1 Score: 113 bits (283), Expect = 6.360e-27
Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query:   16 PMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            P+T I SC+ + F  T V GIL IEGDIVCEEKRT+ VS+ A++ S+ + + F+GV+F V + A+L F  + +LVE L GDS EIFTIEP G++G H     PLPE G
Sbjct: 1065 PLTAIDSCEHLRFDRTTVLGILTIEGDIVCEEKRTIEVSDEAVIVSNRNPLHFKGVHFHVHEKASLRFGFSIMLVENLEGDSSEIFTIEPEGYVGLHPTAWGPLPEDG 1172          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 8.680e-27
Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query:    7 GDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            G  P+T I+SC+R+ F  T V GIL IEGDI+CE++RT+ V++ A++ S+ + + F+GV+F V + ATL FA +++L E L GDS EIFTIEP G++G H     PL E+G
Sbjct: 1216 GHLPLTAIESCERLRFDRTTVLGILTIEGDILCEDQRTIEVTDKAVIVSNRNPLHFKGVHFHVHEKATLRFAFSTMLAENLEGDSSEIFTIEPEGYVGLHPTAWVPLSENG 1326          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI)

HSP 1 Score: 109 bits (272), Expect = 1.930e-25
Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    7 GDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            G  P+T I+SC+++    T V GIL IEGDI+CEE RT+ V++ A++ S+ + + F+GV+F V + ATL FA +++L E L GDS EIFTIEP G++G H     PL E+G
Sbjct: 1100 GHLPLTAIESCEQLRVDRTTVLGILTIEGDILCEELRTIEVTDKAVIVSNRNPLHFKGVHFHVHEKATLRFAFSTMLAENLEGDSSEIFTIEPEGYVGLHPTAWGPLSENG 1210          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.590e-21
Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 1
Query:   16 PMTTIKSCDRIPFGLTPVRGI---LIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            P+ T++SCD + F  TPV+G+   L+++ DI+C E+R L V    +V SD   +R +GV+F V +  +L+F VA++++EKL G+SGE+FT+EP G L   AD   P P++G
Sbjct:  435 PLYTLESCDELRFERTPVQGVSGVLLLDDDIICREERILEVDHDVIVVSDKPDLRLKGVHFVVHEKVSLTFIVATMVLEKLEGESGELFTVEPQGVLAISADMGSPSPDNG 545          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 2.060e-21
Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1
Query:   13 TPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            +P   I SCD +    T + G+L+I GD+VC+E+R L +++  ++ S+   +  EGV F V+QNATL F V+++ VE+L G SG IFT+EP G++G HA+   P+P+ G
Sbjct:  245 SPSQKIHSCDELRSNGTRLEGVLLITGDVVCQEERLLEITDELIILSEKPVLYLEGVRFHVKQNATLRFGVSAMHVEQLEGGSGAIFTVEPQGYVGLHANGQGPVPQDG 353          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ1_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 6.150e-21
Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 1
Query:   34 SCDRIPFGLTPVRG---ILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
            SC+ + F  TPV G   +L+++ D++C+EKR L V    +V SD   +R +GV+F V++ A+L+F VA++++EKL G+SGE+FT+EP G L   AD+  P P++G
Sbjct:  109 SCNELRFERTPVEGMSGVLLLDDDVMCKEKRILEVGHHVIVVSDKPDLRLKGVHFVVQEKASLTFIVATMVLEKLEGESGELFTVEPQGVLAMSADKWSPSPDNG 213          
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI)

HSP 1 Score: 88.6 bits (218), Expect = 3.760e-18
Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query:   22 TTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPE 333
            + + SCD +  G TPV GI+++   ++C+E RT+ VS+ A   S +  + F+GV F V +  +L F + ++ +E L G SG IFT+EP G LG HAD   P PE
Sbjct:  701 SNLNSCDDLTAGWTPVYGIVVVTDHVICQEARTIEVSKNAYFISKIPTLWFKGVTFYVRETGSLKFGIPTMHLETLEGQSGGIFTVEPQGALGLHADSFIPFPE 804          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G9G6_ECTSI1.240e-5790.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G9F6_ECTSI7.640e-4270.37Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L8D9_9PHAE6.360e-2752.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLQ5_ECTSI8.680e-2749.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLS3_ECTSI1.930e-2548.65Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ0_ECTSI1.590e-2143.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LN98_ECTSI2.060e-2143.12Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ1_ECTSI6.150e-2143.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LLQ3_ECTSI3.760e-1841.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12212contigEcto-sp13_S_contig12212:3866..5138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size339
Hectar predicted targeting categoryother localisation
Exons3
Cds size321
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.5676131-UTR-Ecto-sp13_S_contig12212:3865..38831681462649.5676131-UTR-Ecto-sp13_S_contig12212:3865..3883Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12212 3866..3883 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.5780385-CDS-Ecto-sp13_S_contig12212:3883..39821681462649.5780385-CDS-Ecto-sp13_S_contig12212:3883..3982Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12212 3884..3982 +
1681462649.5879831-CDS-Ecto-sp13_S_contig12212:4463..45981681462649.5879831-CDS-Ecto-sp13_S_contig12212:4463..4598Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12212 4464..4598 +
1681462649.598128-CDS-Ecto-sp13_S_contig12212:5051..51381681462649.598128-CDS-Ecto-sp13_S_contig12212:5051..5138Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12212 5052..5138 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12212.1866.1prot_Ecto-sp13_S_contig12212.1866.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12212 3884..5138 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12212.1866.1

>prot_Ecto-sp13_S_contig12212.1866.1 ID=prot_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp
MTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGV
RFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQL
RPLPEHG
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mRNA from alignment at Ecto-sp13_S_contig12212:3866..5138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12212.1866.1 ID=mRNA_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12212:3866..5138+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACTCGGGCGATACCCCCATGACGACCATCAAGTCGTGCGACCGAATCCC CTTTGGCCTCACTCCCGTGCGGGGTATCCTCATCATTGAGGGTGACATCG TCTGTGAGGAAAAGCGGGTGAGAGGGTGCTCTAGTGCTCTAGTGCTGTCC TCGGTCGACATGCATGCTTCGAAGATGCGTGGATATTGCGACCCCTCCCC GCCAGTCCCGCTTTCTTACTTTCCGTGATCCCTTGTGCCTACACGCACGG GGCACGGTGGCACAGAGAATTTTGAATTCACGGGAGTACCGTGTTTACGA TATGAACGTAGACATACCTGGCTCATCAATCCCCACCCCCATGAGTACAC CGCCTCACTTTTGGATTACGTTGAACTTCTTGTTTACTTCCGCAATGATT TAAGAGGAAGGTGGCAATCTTTACCCAGACGCCGAAAGGGTGGAATTGGC ACACTTGAGCGGAATGACAACTCTGTAACAACAACACCTGCTGTAGAAGC ATCGGACCAGCGTTGGCAACAACTCGTCGTCTTATTGCCGTGTTTTTTAC CTCCCGTCCTTTCCCGCTGCCACTCATCGATACCAACCAAAACCTCAGAC GCTAGTAGTGAGCGAGCTCGCGTTAGTTTTCTCCGATATGGACGGCGTGC GTTTCGAGGGCGTCTACTTTCGAGTGGAGCAGAACGCCACGCTGAGCTTT GCCGTGGCCTCGCTGCTCGTGGAGAAGCTCGCGGTACGGTTAATTGTGTG TCTGCGTGTCTCGTCTCGTCTTGTGTAGGTTGGGCTCGTGTTTTTGCATC GCCTAGGCGTGCAACAACATCACGTCGAAAAGCAGAGGGAGGGAGGGAGA GGGGGGGAGGTGGCCGCATTCTCCATCCTAAGAGAAGGGGGATCAGCTTC AAACTTGTGCTGTGGAGACGTGGTAGTCTTTTGGCGGCAACAAAGACGGT CGAAAACAACCGCGGTTTCTTGGAGGGAGGTCGCACCATCCATCGTCTGT CATGCTAGAAGGCTCCTAGACGATTTCCTGATGTTCCTGGTGGTGTTGGT ACCGTTGTTCTTATTGCTGGCGGCGGCGGCAACCATGGAGATGCCACTAT GAACCGATGGTGTTGTTGTTGGTATTGCTGCTGCTGCTGCTACTGCTGCT GTTGCTGTCGCTGTTGTGTCCTTCCCCGCCGTTCAGGGAGACTCCGGCGA GATCTTCACCATCGAGCCAGGAGGGTTTCTGGGCGGGCACGCCGATCAGT TGCGCCCGTTGCCTGAGCACGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12212:3866..5138+

>mRNA_Ecto-sp13_S_contig12212.1866.1 ID=mRNA_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12212:3866..5138+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACGACCATCAAGTCGTGCGACCGAATCCCCTTTGGCCTCACTCCCGT
GCGGGGTATCCTCATCATTGAGGGTGACATCGTCTGTGAGGAAAAGCGGA
CGCTAGTAGTGAGCGAGCTCGCGTTAGTTTTCTCCGATATGGACGGCGTG
CGTTTCGAGGGCGTCTACTTTCGAGTGGAGCAGAACGCCACGCTGAGCTT
TGCCGTGGCCTCGCTGCTCGTGGAGAAGCTCGCGGGAGACTCCGGCGAGA
TCTTCACCATCGAGCCAGGAGGGTTTCTGGGCGGGCACGCCGATCAGTTG
CGCCCGTTGCCTGAGCACGGC
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