mRNA_Ecto-sp13_S_contig12212.1866.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D7G9G6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9G6_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.240e-57 Identity = 102/113 (90.27%), Postives = 105/113 (92.92%), Query Frame = 1
Query: 1 DSGDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
DSGDTPMTTI SCDRIPFGL PVRGILIIEGDIVC EKRTLVVSELAL+FSDMDGVRFE V+F VEQNATLSFAVASLLVEKL GDSGEIFTIEPGGFLGG DQLRPLPE+G
Sbjct: 610 DSGDTPMTTINSCDRIPFGLIPVRGILIIEGDIVCAEKRTLVVSELALIFSDMDGVRFERVHFIVEQNATLSFAVASLLVEKLEGDSGEIFTIEPGGFLGGQFDQLRPLPENG 722
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D7G9F6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9F6_ECTSI) HSP 1 Score: 151 bits (381), Expect = 7.640e-42 Identity = 76/108 (70.37%), Postives = 87/108 (80.56%), Query Frame = 1
Query: 16 PMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
P TTI SC++ PF PV G+LIIEG+IVC+ KRTLVVSE A +FS MD V EGV+F VE+NA L AVA+L VEKL GDSGEIFTI+PGGFLGGHAD LRPLPE+G
Sbjct: 23 PTTTIYSCEQFPFDRNPVVGVLIIEGNIVCKNKRTLVVSERAYLFSHMDEVHLEGVHFIVEENAALGIAVATLHVEKLEGDSGEIFTIDPGGFLGGHADHLRPLPENG 130
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: A0A6H5L8D9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8D9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 6.360e-27 Identity = 57/108 (52.78%), Postives = 75/108 (69.44%), Query Frame = 1
Query: 16 PMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
P+T I SC+ + F T V GIL IEGDIVCEEKRT+ VS+ A++ S+ + + F+GV+F V + A+L F + +LVE L GDS EIFTIEP G++G H PLPE G
Sbjct: 1065 PLTAIDSCEHLRFDRTTVLGILTIEGDIVCEEKRTIEVSDEAVIVSNRNPLHFKGVHFHVHEKASLRFGFSIMLVENLEGDSSEIFTIEPEGYVGLHPTAWGPLPEDG 1172
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ5_ECTSI) HSP 1 Score: 113 bits (282), Expect = 8.680e-27 Identity = 55/111 (49.55%), Postives = 79/111 (71.17%), Query Frame = 1
Query: 7 GDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
G P+T I+SC+R+ F T V GIL IEGDI+CE++RT+ V++ A++ S+ + + F+GV+F V + ATL FA +++L E L GDS EIFTIEP G++G H PL E+G
Sbjct: 1216 GHLPLTAIESCERLRFDRTTVLGILTIEGDILCEDQRTIEVTDKAVIVSNRNPLHFKGVHFHVHEKATLRFAFSTMLAENLEGDSSEIFTIEPEGYVGLHPTAWVPLSENG 1326
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLS3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLS3_ECTSI) HSP 1 Score: 109 bits (272), Expect = 1.930e-25 Identity = 54/111 (48.65%), Postives = 77/111 (69.37%), Query Frame = 1
Query: 7 GDTPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
G P+T I+SC+++ T V GIL IEGDI+CEE RT+ V++ A++ S+ + + F+GV+F V + ATL FA +++L E L GDS EIFTIEP G++G H PL E+G
Sbjct: 1100 GHLPLTAIESCEQLRVDRTTVLGILTIEGDILCEELRTIEVTDKAVIVSNRNPLHFKGVHFHVHEKATLRFAFSTMLAENLEGDSSEIFTIEPEGYVGLHPTAWGPLSENG 1210
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ0_ECTSI) HSP 1 Score: 98.2 bits (243), Expect = 1.590e-21 Identity = 48/111 (43.24%), Postives = 75/111 (67.57%), Query Frame = 1
Query: 16 PMTTIKSCDRIPFGLTPVRGI---LIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
P+ T++SCD + F TPV+G+ L+++ DI+C E+R L V +V SD +R +GV+F V + +L+F VA++++EKL G+SGE+FT+EP G L AD P P++G
Sbjct: 435 PLYTLESCDELRFERTPVQGVSGVLLLDDDIICREERILEVDHDVIVVSDKPDLRLKGVHFVVHEKVSLTFIVATMVLEKLEGESGELFTVEPQGVLAISADMGSPSPDNG 545
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LN98_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN98_ECTSI) HSP 1 Score: 97.8 bits (242), Expect = 2.060e-21 Identity = 47/109 (43.12%), Postives = 73/109 (66.97%), Query Frame = 1
Query: 13 TPMTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
+P I SCD + T + G+L+I GD+VC+E+R L +++ ++ S+ + EGV F V+QNATL F V+++ VE+L G SG IFT+EP G++G HA+ P+P+ G
Sbjct: 245 SPSQKIHSCDELRSNGTRLEGVLLITGDVVCQEERLLEITDELIILSEKPVLYLEGVRFHVKQNATLRFGVSAMHVEQLEGGSGAIFTVEPQGYVGLHANGQGPVPQDG 353
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ1_ECTSI) HSP 1 Score: 94.7 bits (234), Expect = 6.150e-21 Identity = 46/105 (43.81%), Postives = 73/105 (69.52%), Query Frame = 1
Query: 34 SCDRIPFGLTPVRG---ILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPEHG 339
SC+ + F TPV G +L+++ D++C+EKR L V +V SD +R +GV+F V++ A+L+F VA++++EKL G+SGE+FT+EP G L AD+ P P++G
Sbjct: 109 SCNELRFERTPVEGMSGVLLLDDDVMCKEKRILEVGHHVIVVSDKPDLRLKGVHFVVQEKASLTFIVATMVLEKLEGESGELFTVEPQGVLAMSADKWSPSPDNG 213
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Match: D8LLQ3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLQ3_ECTSI) HSP 1 Score: 88.6 bits (218), Expect = 3.760e-18 Identity = 43/104 (41.35%), Postives = 64/104 (61.54%), Query Frame = 1
Query: 22 TTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVRFEGVYFRVEQNATLSFAVASLLVEKLAGDSGEIFTIEPGGFLGGHADQLRPLPE 333
+ + SCD + G TPV GI+++ ++C+E RT+ VS+ A S + + F+GV F V + +L F + ++ +E L G SG IFT+EP G LG HAD P PE
Sbjct: 701 SNLNSCDDLTAGWTPVYGIVVVTDHVICQEARTIEVSKNAYFISKIPTLWFKGVTFYVRETGSLKFGIPTMHLETLEGQSGGIFTVEPQGALGLHADSFIPFPE 804 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12212.1866.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig12212.1866.1 >prot_Ecto-sp13_S_contig12212.1866.1 ID=prot_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=107bp MTTIKSCDRIPFGLTPVRGILIIEGDIVCEEKRTLVVSELALVFSDMDGVback to top mRNA from alignment at Ecto-sp13_S_contig12212:3866..5138+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig12212.1866.1 ID=mRNA_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1273bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12212:3866..5138+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12212:3866..5138+ >mRNA_Ecto-sp13_S_contig12212.1866.1 ID=mRNA_Ecto-sp13_S_contig12212.1866.1|Name=mRNA_Ecto-sp13_S_contig12212.1866.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=321bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12212:3866..5138+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |