mRNA_Ecto-sp13_S_contig12210.1863.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig12210.1863.1
Unique NamemRNA_Ecto-sp13_S_contig12210.1863.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig12210.1863.1 vs. uniprot
Match: A0A6H5KYQ8_9PHAE (3'-5' exonuclease domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KYQ8_9PHAE)

HSP 1 Score: 423 bits (1087), Expect = 9.730e-131
Identity = 224/246 (91.06%), Postives = 230/246 (93.50%), Query Frame = -1 
Query:  898 SGFLDESGTTAAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTATVTPPSGARGLAEIFTGRGAPSSTGTGDAADGGEGGGDAIGKFLQRLADASGTPSSMLGGLPEDDPPASLEAPPGGEAGPAAGVGAGGEGVDQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSSLGRVRFTLALREWHQAATAEVPAEASQRKEGAPRRSSVVGEADAGVYGEGNSFAGLVEEGFRR 1635
            SGFL+ESGT AAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTA VTPPSG R +AEIFTGRGAPSSTGTGDAADG    GDAIGKFLQRLADASGTPSSMLGGLPEDDPPA +EAP  G AGPAAGVGAGGEG DQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSSLGRVRFTLALREWH+AATA VPA AS+R+EGAPRRSSVVGE DAGVYGEGNSFAGLVEEGFRR
Sbjct: 1149 SGFLNESGTMAAWYLEGKLSSDAAFVDNEAAEYQRQQQDSLRQERQGTTAIVTPPSGGREVAEIFTGRGAPSSTGTGDAADGXXXXGDAIGKFLQRLADASGTPSSMLGGLPEDDPPAFMEAPQRGGAGPAAGVGAGGEGADQEQQQHPPHLVLFARVKGRPFVYCGAVDCVAQEYVWSAGSSLGRVRFTLALREWHEAATAVVPAGASRREEGAPRRSSVVGEVDAGVYGEGNSFAGLVEEGFRR 1394
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig12210.1863.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KYQ8_9PHAE9.730e-13191.063'-5' exonuclease domain-containing protein n=2 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig12210contigEcto-sp13_S_contig12210:2937..4571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1635
Hectar predicted targeting categoryother localisation
Exons1
Cds size837
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.4097648-UTR-Ecto-sp13_S_contig12210:2936..35181681462649.4097648-UTR-Ecto-sp13_S_contig12210:2936..3518Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12210 2937..3518 +
1681462649.4300137-UTR-Ecto-sp13_S_contig12210:4355..45711681462649.4300137-UTR-Ecto-sp13_S_contig12210:4355..4571Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig12210 4356..4571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.4185653-CDS-Ecto-sp13_S_contig12210:3518..43551681462649.4185653-CDS-Ecto-sp13_S_contig12210:3518..4355Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig12210 3519..4355 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig12210.1863.1prot_Ecto-sp13_S_contig12210.1863.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig12210 3519..4355 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig12210.1863.1

>prot_Ecto-sp13_S_contig12210.1863.1 ID=prot_Ecto-sp13_S_contig12210.1863.1|Name=mRNA_Ecto-sp13_S_contig12210.1863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=279bp
MEKRAPDQDRQTLTPTSHSLPGRKLARHFTEVHSSSDHHRQKLCFIAQQQ
VPRHPPRQTQSLFATTISIAPLFLAKKRRLMERHRHYPPVTHHASPKGEQ
EPLASTSEPLFNQPSKRIPLAIYTRIGLPHHTRPPRCPLFSLRSLRRNLR
SGSLVPLPQRQRKPHSSERRPRAPDVLLRDAVHCAAVHKRPPLDPREQDQ
VWRVLLLLLIHALASGTYASRGARFPPWWCFQGGGGVVFRKPPQHRRGRP
RRVRKPLQKLSDRVAAALPAVGGVPCPR*
back to top

mRNA from alignment at Ecto-sp13_S_contig12210:2937..4571+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig12210.1863.1 ID=mRNA_Ecto-sp13_S_contig12210.1863.1|Name=mRNA_Ecto-sp13_S_contig12210.1863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1635bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12210:2937..4571+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGAGTGGATCCGTCTTCACGAACACATTCATTGATACTGCTGCCCCGA
ATCTGTAGCAGAAGCCAAGACCTGTCGTTCTCGCCCTCAGACCGTCCCAG
ACGACTGCTGCCTGCAGCCGCGACCCACCTTACCCTACGCTCTCGTCTTC
TAGTAGCTCCGATCGGGGCTCACACACAGTAACTCTGGTCCAGTCTACTA
AAGTACCGCGCCACCGGTAAGCAAATGTTGGCACCCTTGGGTACCCCCGG
GATATGCGGACACTGTTACAGTCACGGACCCCCTCATCGCCAAAAAATAG
CACCCGAAGCCCCACTAGGTAGCTCGAGCCTCAAACACATTTGTACAAAG
GACAACGACAAAAGGCTGTGTGTAATACAATGCAACACACACAAACTGCA
GTTATTTACGAGAAAACAAAATCCAGACATCGCCGCGACGACGAACAGCT
ACACTCGTAAGTGGGACATACGAGACGCGGCATCGTGGTTCTCTCTCCCT
CCACCTTGACTTGACGACGGGAGCTTGTAAGAGCGCGCCATCGAATCAAG
AACGAGGCGTTTCTGCGTTCACCTGTTCGCACATGGAAAAGCGTGCACCC
GACCAAGATAGACAGACCTTAACGCCAACATCACATTCCCTACCAGGTAG
GAAATTAGCCCGGCACTTCACCGAGGTACACTCTTCTTCCGACCACCATC
GACAAAAACTGTGCTTTATCGCGCAGCAGCAAGTACCGCGACACCCACCT
CGCCAAACACAATCACTTTTCGCGACAACCATCTCTATCGCGCCCCTTTT
CCTGGCTAAAAAAAGGAGGCTCATGGAACGACACCGTCACTATCCGCCGG
TGACACATCACGCCTCGCCCAAAGGAGAACAAGAGCCCCTGGCCTCAACG
TCTGAACCCCTCTTCAACCAACCCAGCAAACGAATTCCCCTCGCCATATA
CACCCGCATCGGCCTCCCCCACCACACTAGACCTCCGCGGTGCCCCCTCT
TTTCGTTGCGAAGCCTCCGCCGGAACCTCCGCAGTGGCAGCCTGGTGCCA
CTCCCTCAGCGCCAGCGTAAACCGCACTCTTCCGAGCGAAGACCCCGCGC
TCCAGACGTACTCCTGCGCGACGCAGTCCACTGCGCCGCAGTACACAAAC
GGCCGCCCCTTGACCCTCGCGAACAGGACCAGGTGTGGCGGGTGTTGCTG
CTGCTCTTGATCCACGCCCTCGCCTCCGGCACCTACGCCAGCCGCGGGGC
CCGCTTCCCCCCCTGGTGGTGCTTCCAAGGAGGCGGGGGGGTCGTCTTCC
GGAAGCCCCCCCAGCATCGACGAGGGCGTCCCCGACGCGTCCGCAAGCCT
CTGCAGAAACTTTCCGATCGCGTCGCCGCCGCCCTCCCCGCCGTCGGCGG
CGTCCCCTGTCCCCGTTGAAGAAGGCGCCCCCCTCCCGGTGAAAATCTCG
GCCAACCCCCTTGCCCCGGATGGTGGTGTCACTGTTGCCGTAGTCCCTTG
TCGCTCCTGGCGGAGAGAGTCCTGCTGCTGCCGCTGGTACTCCGCGGCCT
CGTTGTCGACGAAGGCAGCGTCAGAGGAGAGCTTTCCCTCCAGGTACCAC
GCCGCCGTCGTGCCGCTCTCGTCCAGGAAGCCGCT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig12210:2937..4571+

>mRNA_Ecto-sp13_S_contig12210.1863.1 ID=mRNA_Ecto-sp13_S_contig12210.1863.1|Name=mRNA_Ecto-sp13_S_contig12210.1863.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=837bp|location=Sequence derived from alignment at Ecto-sp13_S_contig12210:2937..4571+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGAAAAGCGTGCACCCGACCAAGATAGACAGACCTTAACGCCAACATC
ACATTCCCTACCAGGTAGGAAATTAGCCCGGCACTTCACCGAGGTACACT
CTTCTTCCGACCACCATCGACAAAAACTGTGCTTTATCGCGCAGCAGCAA
GTACCGCGACACCCACCTCGCCAAACACAATCACTTTTCGCGACAACCAT
CTCTATCGCGCCCCTTTTCCTGGCTAAAAAAAGGAGGCTCATGGAACGAC
ACCGTCACTATCCGCCGGTGACACATCACGCCTCGCCCAAAGGAGAACAA
GAGCCCCTGGCCTCAACGTCTGAACCCCTCTTCAACCAACCCAGCAAACG
AATTCCCCTCGCCATATACACCCGCATCGGCCTCCCCCACCACACTAGAC
CTCCGCGGTGCCCCCTCTTTTCGTTGCGAAGCCTCCGCCGGAACCTCCGC
AGTGGCAGCCTGGTGCCACTCCCTCAGCGCCAGCGTAAACCGCACTCTTC
CGAGCGAAGACCCCGCGCTCCAGACGTACTCCTGCGCGACGCAGTCCACT
GCGCCGCAGTACACAAACGGCCGCCCCTTGACCCTCGCGAACAGGACCAG
GTGTGGCGGGTGTTGCTGCTGCTCTTGATCCACGCCCTCGCCTCCGGCAC
CTACGCCAGCCGCGGGGCCCGCTTCCCCCCCTGGTGGTGCTTCCAAGGAG
GCGGGGGGGTCGTCTTCCGGAAGCCCCCCCAGCATCGACGAGGGCGTCCC
CGACGCGTCCGCAAGCCTCTGCAGAAACTTTCCGATCGCGTCGCCGCCGC
CCTCCCCGCCGTCGGCGGCGTCCCCTGTCCCCGTTGA
back to top