mRNA_Ecto-sp13_S_contig1221.1860.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig1221.1860.1
Unique NamemRNA_Ecto-sp13_S_contig1221.1860.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: A0A6H5L1Q9_9PHAE (MEP7c protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Q9_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 1.880e-10
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  665 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 745
            SNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:   67 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 93
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: A0A6H5L834_9PHAE (MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L834_9PHAE)

HSP 1 Score: 65.9 bits (159), Expect = 3.410e-10
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  665 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 745
            SNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:   91 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 117
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: D7G1G1_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G1_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 2.970e-9
Identity = 28/32 (87.50%), Postives = 29/32 (90.62%), Query Frame = -1 
Query:  650 SNPEVFDRVNVRGDIRFSDIHHNWFGQ*VFRH 745
            SNPEVFDRVNVRGDIRFSDIHHNWFGQ  + H
Sbjct:  230 SNPEVFDRVNVRGDIRFSDIHHNWFGQYSYGH 261
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: D7G1G2_ECTSI (Mannuronan C-5-epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1G2_ECTSI)

HSP 1 Score: 65.9 bits (159), Expect = 7.650e-9
Identity = 27/27 (100.00%), Postives = 27/27 (100.00%), Query Frame = -1 
Query:  665 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 745
            SNPEVFDRVNVRGDIRFSDIHHNWFGQ
Sbjct:  110 SNPEVFDRVNVRGDIRFSDIHHNWFGQ 136
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: A0A6H5K9I9_9PHAE (MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9I9_9PHAE)

HSP 1 Score: 57.4 bits (137), Expect = 6.810e-6
Identity = 23/32 (71.88%), Postives = 27/32 (84.38%), Query Frame = -1 
Query:  650 SNPEVFDRVNVRGDIRFSDIHHNWFGQ*VFRH 745
            SN ++FDRVNVRGDIRFSDIHHN+FG   + H
Sbjct:  234 SNEDLFDRVNVRGDIRFSDIHHNYFGMYTYGH 265
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BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Match: D8LKL1_ECTSI (Mannuronan C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKL1_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 2.620e-5
Identity = 22/32 (68.75%), Postives = 27/32 (84.38%), Query Frame = -1 
Query:  650 SNPEVFDRVNVRGDIRFSDIHHNWFGQ*VFRH 745
            SN ++FDRVNVRG+IRFSDIHHN+FG   + H
Sbjct:  162 SNEDLFDRVNVRGNIRFSDIHHNYFGMYTYGH 193
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig1221.1860.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L1Q9_9PHAE1.880e-10100.00MEP7c protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 ... [more]
A0A6H5L834_9PHAE3.410e-10100.00MEP8 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G1G1_ECTSI2.970e-987.50Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
D7G1G2_ECTSI7.650e-9100.00Mannuronan C-5-epimerase n=1 Tax=Ectocarpus silicu... [more]
A0A6H5K9I9_9PHAE6.810e-671.88MEP6 protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LKL1_ECTSI2.620e-568.75Mannuronan C-5 epimerase n=1 Tax=Ectocarpus silicu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig1221contigEcto-sp13_S_contig1221:231..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size745
Hectar predicted targeting categoryother localisation
Exons1
Cds size462
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.064069-UTR-Ecto-sp13_S_contig1221:230..2991681462649.064069-UTR-Ecto-sp13_S_contig1221:230..299Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1221 231..299 +
1681462649.0857136-UTR-Ecto-sp13_S_contig1221:761..9751681462649.0857136-UTR-Ecto-sp13_S_contig1221:761..975Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig1221 762..975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681462649.0742822-CDS-Ecto-sp13_S_contig1221:299..7611681462649.0742822-CDS-Ecto-sp13_S_contig1221:299..761Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig1221 300..761 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig1221.1860.1prot_Ecto-sp13_S_contig1221.1860.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig1221 300..761 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig1221.1860.1

>prot_Ecto-sp13_S_contig1221.1860.1 ID=prot_Ecto-sp13_S_contig1221.1860.1|Name=mRNA_Ecto-sp13_S_contig1221.1860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=154bp
MANNRGLRRNYQKQTTPVGMIERTHNQATAVAHPHKSEYRQKGLRLAEFV
YLCLVNDLFYVFPVNDLLFVFLFHDVLYVFLFTSFGFQENASQAPRNVKK
SKNVPKKEIVGSRHPLRTRQNNIKEDTSTSMHSTSNSDLTIFLPHMRGHA
SVR*
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mRNA from alignment at Ecto-sp13_S_contig1221:231..975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig1221.1860.1 ID=mRNA_Ecto-sp13_S_contig1221.1860.1|Name=mRNA_Ecto-sp13_S_contig1221.1860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=745bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1221:231..975+ (Ectocarpus species13 EcNAP12_S_4_19m)
CCCCATCGTAATCTAGACCGACAGTGTACTCTATCTGTGCCGTACAGCAA
CACTCCTTAACACTGGTGTATGGCGAACAACCGCGGCCTTCGCCGTAACT
ACCAAAAACAGACAACACCAGTGGGCATGATCGAACGGACACATAACCAA
GCGACGGCGGTCGCGCATCCACACAAAAGTGAATATCGGCAAAAAGGGTT
GCGCTTGGCGGAATTTGTTTATTTGTGTCTTGTTAACGATTTGTTCTACG
TTTTTCCTGTCAATGATTTGTTGTTCGTTTTCTTGTTTCACGATGTGCTT
TACGTTTTCTTGTTCACAAGTTTCGGCTTTCAAGAGAATGCGTCCCAAGC
TCCCCGAAATGTAAAAAAATCGAAAAATGTACCAAAAAAAGAAATAGTAG
GAAGTAGGCACCCGTTAAGGACACGGCAAAACAACATAAAGGAGGACACA
TCCACGTCAATGCACTCAACAAGTAACTCCGACCTCACGATTTTCTTGCC
GCACATGCGCGGGCATGCGTCTGTACGGTAAATTCATGTACACGTTATGA
AAAATAATAAGGCGCAACGCAACCCTCAACGGCTGAGCACTGTCTGCCTG
AATCGGCATCAAGACCACCAAAACAACACGGTTATCCATGTCGTACACTA
TGTCGAAATACTCACTGTCCGAACCAGTTGTGGTGTATGTCCGAGAAGCG
GATGTCTCCCCTAACGTTAACGCGGTCGAACACCTCCGGGTTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig1221:231..975+

>mRNA_Ecto-sp13_S_contig1221.1860.1 ID=mRNA_Ecto-sp13_S_contig1221.1860.1|Name=mRNA_Ecto-sp13_S_contig1221.1860.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=462bp|location=Sequence derived from alignment at Ecto-sp13_S_contig1221:231..975+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGAACAACCGCGGCCTTCGCCGTAACTACCAAAAACAGACAACACC
AGTGGGCATGATCGAACGGACACATAACCAAGCGACGGCGGTCGCGCATC
CACACAAAAGTGAATATCGGCAAAAAGGGTTGCGCTTGGCGGAATTTGTT
TATTTGTGTCTTGTTAACGATTTGTTCTACGTTTTTCCTGTCAATGATTT
GTTGTTCGTTTTCTTGTTTCACGATGTGCTTTACGTTTTCTTGTTCACAA
GTTTCGGCTTTCAAGAGAATGCGTCCCAAGCTCCCCGAAATGTAAAAAAA
TCGAAAAATGTACCAAAAAAAGAAATAGTAGGAAGTAGGCACCCGTTAAG
GACACGGCAAAACAACATAAAGGAGGACACATCCACGTCAATGCACTCAA
CAAGTAACTCCGACCTCACGATTTTCTTGCCGCACATGCGCGGGCATGCG
TCTGTACGGTAA
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